Rmu_sc0004401.1_g000009

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004401.1
OG0000270
Physical Location & Seq
Reverse (-)
39918 .. 40424
507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004401.1_g000009.1.cds

Sequence Viewer

Length: 507 bp
atgcccaaattcaatactagtattgctaagtaccgtttcagtgaactgcctgagggttttaatagtctagcatcaggctcgctaggagtaagcggagggcgtctgcggttgagcagggaagaagaatttctccctcaagatcacgacgagtttctgcagccatttagagttagggagttgaaacaagttgtgaagggcagcgaaggtaaactcaaatggttagctgacaatgttcctctcgcttgtaaaaatatagatgtcagcgcaccgtacacatttaggatgctagctttccacccaaacaatgaggatgtcatgtatttgactcattaccataaaattatcacatgcaagcttcgtggaggaacgttagagaaaattttagagtgtccagtaaagggaatgacgagggtacattgctgctacccgttttctctcccatggtggcctaccccggttcctaggactcttaaattagttcaattggctatacccccgttagtgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

168

Amino Acids

19.19

Weight (kDa)

9.15

Isoelectric Point (pI)

52.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 93, 106
AclI AACGTT 1 cut(s) 368
AcsI RAATTY 3 cut(s) 8, 125, 378
AcyI GRCGYC 1 cut(s) 100
AfaI GTAC 3 cut(s) 32, 272, 414
AfiI CCNNNNNNNGG 1 cut(s) 398
AgsI TTSAA 3 cut(s) 13, 181, 482
AhlI ACTAGT 1 cut(s) 17
AluBI AGCT 3 cut(s) 224, 290, 355
AluI AGCT 3 cut(s) 224, 290, 355
AoxI GGCC 1 cut(s) 446
ApeKI GCWGC 3 cut(s) 157, 198, 420
ApoI RAATTY 3 cut(s) 8, 125, 378
Asp700I GAANNNNTTC 1 cut(s) 126
AspA2I CCTAGG 1 cut(s) 461
AspLEI GCGC 1 cut(s) 266
AsuC2I CCSGG 1 cut(s) 455
AsuNHI GCTAGC 1 cut(s) 286
AvrII CCTAGG 1 cut(s) 461
AxyI CCTNAGG 1 cut(s) 51
BbvI GCAGC 3 cut(s) 169, 210, 407
BcgI CGANNNNNNTGC 2 cut(s) 60, 94
BcnI CCSGG 1 cut(s) 455
BcuI ACTAGT 1 cut(s) 17
BfaI CTAG 5 cut(s) 18, 68, 83, 287, 462
BfmI CTRYAG 1 cut(s) 155
BisI GCNGC 3 cut(s) 158, 199, 421
BlnI CCTAGG 1 cut(s) 461
BlsI GCNGC 3 cut(s) 159, 200, 422
Bme1390I CCNGG 1 cut(s) 455
BmiI GGNNCC 1 cut(s) 459
BmrFI CCNGG 1 cut(s) 455
BmsI GCATC 2 cut(s) 80, 273
BmtI GCTAGC 1 cut(s) 290
BpuEI CTTGAG 1 cut(s) 120
BpuMI CCSGG 1 cut(s) 455
BsaHI GRCGYC 1 cut(s) 100
BsaJI CCNNGG 3 cut(s) 440, 453, 461
Bsc4I CCNNNNNNNGG 1 cut(s) 398
Bse1I ACTGG 1 cut(s) 392
Bse21I CCTNAGG 1 cut(s) 51
Bse3DI GCAATG 1 cut(s) 415
BseDI CCNNGG 3 cut(s) 440, 453, 461
BseGI GGATG 2 cut(s) 288, 316
BseLI CCNNNNNNNGG 1 cut(s) 398
BseMI GCAATG 1 cut(s) 415
BseMII CTCAG 1 cut(s) 42
BseNI ACTGG 1 cut(s) 392
BseXI GCAGC 3 cut(s) 169, 210, 407
BshFI GGCC 1 cut(s) 448
BsiSI CCGG 1 cut(s) 455
BslI CCNNNNNNNGG 1 cut(s) 398
BsnI GGCC 1 cut(s) 448
Bsp143I GATC 1 cut(s) 139
Bsp19I CCATGG 1 cut(s) 440
BspACI CCGC 2 cut(s) 93, 106
BspANI GGCC 1 cut(s) 448
BspCNI CTCAG 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 459
BspMAI CTGCAG 1 cut(s) 159
BspOI GCTAGC 1 cut(s) 290
BsrDI GCAATG 1 cut(s) 415
BsrI ACTGG 1 cut(s) 392
BssECI CCNNGG 3 cut(s) 440, 453, 461
BssMI GATC 1 cut(s) 139
BssNI GRCGYC 1 cut(s) 100
BssT1I CCWWGG 2 cut(s) 440, 461
Bst4CI ACNGT 2 cut(s) 35, 270
BstACI GRCGYC 1 cut(s) 100
BstC8I GCNNGC 3 cut(s) 80, 288, 353
BstDEI CTNAG 2 cut(s) 27, 51
BstDSI CCRYGG 1 cut(s) 440
BstF5I GGATG 2 cut(s) 288, 316
BstHHI GCGC 1 cut(s) 266
BstKTI GATC 1 cut(s) 142
BstMBI GATC 1 cut(s) 139
BstNSI RCATGY 1 cut(s) 351
BstSCI CCNGG 1 cut(s) 453
BstSFI CTRYAG 1 cut(s) 155
BstV1I GCAGC 3 cut(s) 169, 210, 407
Bsu36I CCTNAGG 1 cut(s) 51
BsuRI GGCC 1 cut(s) 448
BtgI CCRYGG 1 cut(s) 440
BtsCI GGATG 2 cut(s) 288, 316
BtsIMutI CAGTG 1 cut(s) 46
Cac8I GCNNGC 3 cut(s) 80, 288, 353
CfoI GCGC 1 cut(s) 266
CseI GACGC 1 cut(s) 89
Csp6I GTAC 3 cut(s) 31, 271, 413
CspCI CAANNNNNGTGG 2 cut(s) 340, 375
CviAII CATG 3 cut(s) 316, 348, 441
CviJI RGCY 7 cut(s) 78, 160, 224, 290, 355, 448, 488
CviKI_1 RGCY 7 cut(s) 78, 160, 224, 290, 355, 448, 488
CviQI GTAC 3 cut(s) 31, 271, 413
DdeI CTNAG 2 cut(s) 27, 51
DpnI GATC 1 cut(s) 141
DpnII GATC 1 cut(s) 139
Eco130I CCWWGG 2 cut(s) 440, 461
Eco81I CCTNAGG 1 cut(s) 51
EcoT14I CCWWGG 2 cut(s) 440, 461
ErhI CCWWGG 2 cut(s) 440, 461
FaeI CATG 3 cut(s) 319, 351, 444
FaiI YATR 6 cut(s) 254, 317, 336, 349, 442, 491
FatI CATG 3 cut(s) 315, 347, 440
Fnu4HI GCNGC 3 cut(s) 158, 199, 421
FokI GGATG 2 cut(s) 295, 323
Fsp4HI GCNGC 3 cut(s) 158, 199, 421
FspBI CTAG 5 cut(s) 18, 68, 83, 287, 462
GlaI GCGC 1 cut(s) 265
GluI GCNGC 3 cut(s) 158, 199, 421
HaeIII GGCC 1 cut(s) 448
HapII CCGG 1 cut(s) 455
HgaI GACGC 1 cut(s) 89
HhaI GCGC 1 cut(s) 266
Hin1I GRCGYC 1 cut(s) 100
Hin1II CATG 3 cut(s) 319, 351, 444
Hin6I GCGC 1 cut(s) 264
HinP1I GCGC 1 cut(s) 264
HindIII AAGCTT 1 cut(s) 353
HinfI GANTC 2 cut(s) 325, 466
HpaII CCGG 1 cut(s) 455
Hpy166II GTNNAC 3 cut(s) 44, 209, 273
Hpy188III TCNNGA 2 cut(s) 137, 143
Hpy8I GTNNAC 3 cut(s) 44, 209, 273
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 2 cut(s) 187, 197
HpyCH4III ACNGT 2 cut(s) 35, 270
HpyCH4IV ACGT 1 cut(s) 368
HpyCH4V TGCA 2 cut(s) 157, 351
HpyF3I CTNAG 2 cut(s) 27, 51
HpySE526I ACGT 1 cut(s) 368
Hsp92I GRCGYC 1 cut(s) 100
Hsp92II CATG 3 cut(s) 319, 351, 444
HspAI GCGC 1 cut(s) 264
Kzo9I GATC 1 cut(s) 139
LpnPI CCDG 5 cut(s) 60, 63, 100, 405, 468
Lsp1109I GCAGC 3 cut(s) 169, 210, 407
LweI GCATC 2 cut(s) 80, 273
MaeI CTAG 5 cut(s) 18, 68, 83, 287, 462
MaeII ACGT 1 cut(s) 368
MalI GATC 1 cut(s) 141
MboI GATC 1 cut(s) 139
MboII GAAGA 2 cut(s) 131, 134
MfeI CAATTG 1 cut(s) 482
MluCI AATT 6 cut(s) 8, 125, 339, 378, 473, 482
MlyI GAGTC 2 cut(s) 319, 460
MnlI CCTC 7 cut(s) 46, 89, 144, 246, 301, 356, 402
MroXI GAANNNNTTC 1 cut(s) 126
MseI TTAA 2 cut(s) 60, 471
MspI CCGG 1 cut(s) 455
MspR9I CCNGG 1 cut(s) 455
MunI CAATTG 1 cut(s) 482
NciI CCSGG 1 cut(s) 455
NcoI CCATGG 1 cut(s) 440
NdeII GATC 1 cut(s) 139
NheI GCTAGC 1 cut(s) 286
NlaIII CATG 3 cut(s) 319, 351, 444
NlaIV GGNNCC 1 cut(s) 459
NspI RCATGY 1 cut(s) 351
PdmI GAANNNNTTC 1 cut(s) 126
PkrI GCNGC 3 cut(s) 159, 200, 422
PleI GAGTC 2 cut(s) 319, 460
PpsI GAGTC 2 cut(s) 319, 460
Psp1406I AACGTT 1 cut(s) 368
PspN4I GGNNCC 1 cut(s) 459
PstI CTGCAG 1 cut(s) 159
RsaI GTAC 3 cut(s) 32, 272, 414
RsaNI GTAC 3 cut(s) 31, 271, 413
SaqAI TTAA 2 cut(s) 60, 471
SatI GCNGC 3 cut(s) 158, 199, 421
Sau3AI GATC 1 cut(s) 139
SchI GAGTC 2 cut(s) 319, 460
ScrFI CCNGG 1 cut(s) 455
SetI ASST 5 cut(s) 208, 226, 292, 357, 371
SfaNI GCATC 2 cut(s) 80, 273
SfcI CTRYAG 1 cut(s) 155
SmlI CTYRAG 1 cut(s) 135
SmoI CTYRAG 1 cut(s) 135
SpeI ACTAGT 1 cut(s) 17
Sse9I AATT 6 cut(s) 8, 125, 339, 378, 473, 482
SsiI CCGC 2 cut(s) 93, 106
SspMI CTAG 5 cut(s) 18, 68, 83, 287, 462
StyD4I CCNGG 1 cut(s) 453
StyI CCWWGG 2 cut(s) 440, 461
TaaI ACNGT 2 cut(s) 35, 270
TaiI ACGT 1 cut(s) 371
TasI AATT 6 cut(s) 8, 125, 339, 378, 473, 482
Tru1I TTAA 2 cut(s) 60, 471
Tru9I TTAA 2 cut(s) 60, 471
TscAI CASTG 1 cut(s) 46
TseI GCWGC 3 cut(s) 157, 198, 420
TspRI CASTG 1 cut(s) 46
XapI RAATTY 3 cut(s) 8, 125, 378
XceI RCATGY 1 cut(s) 351
XmaJI CCTAGG 1 cut(s) 461
XmnI GAANNNNTTC 1 cut(s) 126
XspI CTAG 5 cut(s) 18, 68, 83, 287, 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.