Rh3CG021900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000270
Physical Location & Seq
Forward (+)
1504950 .. 1506530
1581 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG021900.1

Sequence Viewer

Length: 1233 bp
ATGGCTCAACACCCACCATCAAAATCCACGATTAATAATCTCCCTGACCTTGTATTGGTCGAAATCCTTTGTCGACTCCCTCACAAAAAACTTATTTTTCGATGCAAGCTCGTGTCCAAGCGTTGGCGCACCCTCCTCTCTGATCCTTATTTTGTTAACCGCTTTCTATGCATCCAACATGATCAGCATAACCCCTTTCTGAATGATTATGTTACTTATATGATTCCCTATAGCAACAGCGCTATCATCAAGGTTAATGCCGAGTATAGGTGTAGGATTGTGCGAATACTTCCTAACCAAGATTACAAGGGATTTGATGTGGAGATATATTCTTCCGAGACTGGTGAATGGAGGGAGTATCCATCGTCTAAGATATTATGCCAACAACGACCCTATACTACTTTTCAGTGTCCAAGCGTTGCTTGCAATGGAAAGCTGTATTGGCTGAATGACGGAGGCTCAATTTTTGAGTTGGATCCGTTCAATATTTGTGCTGGCGATGTTATTGATAAATGTCGTTTCATTGATGCACCGACCCCAGATGCACATATTTTATGTTGGCATATAGGTGTTTGTCAAGGGCGTTTGCGGATGTGCCCGTTTTTCTTTTATTGTTCTGCTCGCTATCCTATAACTATTTGGGAGATGAAAGAAAACCAAGTGGATGGCAAACCAGAATGGTGTTTACTTCATCACATATCTTCTCTGTCAGAGATGGTTGCAAAACAACCTTTCATCAGTTTAAGTTTTGAAATCGTAGGTTTCCACCCGGTTCATGGGGATATAGTGTACTTACAACATAACGATATATATAGTGAGCCAAGATACATAGTCACGTGCAATGTTCGTGAAAGAACAATAGAGATAGCTACAAAAATTCCATTTGAAAATAGTCCTGGATACGCTTGGGCCCCTGAGCAGATTTGCGACAATGTGATCCCATGGTGGCCAACACCAATTCCAACAAGACTACACTATCACGAGGAGTGCCTAAATATCACTGTGATTAGTGTAGACACCTTTACTATTAAGGTAGGTTGCTTAAGTAATGTTAAGCAATTGAAACAAAAACTTGAAGAGAAGAAAGGGCCTGGGCAATATGAACTACATTTTGATGGGCGAGTTTTAGAAGATGATGACAAATGGCTTGCTGATTATGGAATCAAGGACAAATCAAAGATTTACATTGGCGAACATTGTTCGAAAGAGTGGCTTATGTCAAAGTCTTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

410

Amino Acids

47.84

Weight (kDa)

6.57

Isoelectric Point (pI)

42.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 11 - 51 2.1e-08 F-box domain
F-box-like PF12937 11 - 54 2.8e-07 F-box-like
b-prop_At3g26010-like PF24750 99 - 291 1.1e-11 F-box protein At3g26010-like, beta-propeller
ubiquitin PF00240 332 - 394 7.6e-09 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 123
AccI GTMKAC 2 cut(s) 73, 1014
AciI CCGC 2 cut(s) 160, 589
AclWI GGATC 4 cut(s) 137, 470, 483, 931
AcoI YGGCCR 1 cut(s) 947
AcsI RAATTY 1 cut(s) 876
AcvI CACGTG 1 cut(s) 837
AfaI GTAC 1 cut(s) 791
AfeI AGCGCT 1 cut(s) 241
AfiI CCNNNNNNNGG 4 cut(s) 55, 123, 267, 776
AflII CTTAAG 1 cut(s) 1042
AgsI TTSAA 5 cut(s) 484, 752, 887, 1063, 1076
AjnI CCWGG 2 cut(s) 895, 1090
AjuI GAANNNNNNNTTGG 2 cut(s) 424, 456
AluBI AGCT 3 cut(s) 109, 436, 869
AluI AGCT 3 cut(s) 109, 436, 869
Alw26I GTCTC 1 cut(s) 332
AlwI GGATC 4 cut(s) 137, 470, 483, 931
Aor51HI AGCGCT 1 cut(s) 241
AoxI GGCC 3 cut(s) 909, 947, 1088
ApaI GGGCCC 1 cut(s) 913
ApoI RAATTY 1 cut(s) 876
AseI ATTAAT 1 cut(s) 33
AspLEI GCGC 2 cut(s) 129, 242
AspS9I GGNCC 3 cut(s) 909, 910, 1088
AsuC2I CCSGG 1 cut(s) 770
AsuHPI GGTGA 1 cut(s) 356
AsuII TTCGAA 1 cut(s) 1202
BaeGI GKGCMC 2 cut(s) 599, 913
BalI TGGCCA 1 cut(s) 949
BamHI GGATCC 1 cut(s) 475
BanII GRGCYC 1 cut(s) 913
BauI CACGAG 2 cut(s) 110, 980
BbrPI CACGTG 1 cut(s) 837
BccI CCATC 5 cut(s) 25, 370, 659, 709, 1109
BciT130I CCWGG 2 cut(s) 897, 1092
BciVI GTATCC 2 cut(s) 369, 893
BclI TGATCA 1 cut(s) 181
BcnI CCSGG 1 cut(s) 770
BcoDI GTCTC 1 cut(s) 332
BfaI CTAG 1 cut(s) 1231
BfmI CTRYAG 1 cut(s) 229
BfoI RGCGCY 1 cut(s) 243
BfrI CTTAAG 1 cut(s) 1042
BfuI GTATCC 2 cut(s) 369, 893
Bme1390I CCNGG 3 cut(s) 770, 897, 1092
BmgT120I GGNCC 3 cut(s) 909, 910, 1088
BmiI GGNNCC 3 cut(s) 477, 911, 912
BmrFI CCNGG 3 cut(s) 770, 897, 1092
BmsI GCATC 4 cut(s) 92, 180, 517, 532
Bpu10I CCTNAGC 1 cut(s) 915
Bpu14I TTCGAA 1 cut(s) 1202
BpuMI CCSGG 1 cut(s) 770
BsaAI YACGTR 1 cut(s) 837
BsaJI CCNNGG 2 cut(s) 941, 1091
Bsc4I CCNNNNNNNGG 4 cut(s) 55, 123, 267, 776
Bse1I ACTGG 1 cut(s) 346
Bse3DI GCAATG 2 cut(s) 433, 847
BseBI CCWGG 2 cut(s) 897, 1092
BseDI CCNNGG 2 cut(s) 941, 1091
BseGI GGATG 3 cut(s) 171, 597, 670
BseLI CCNNNNNNNGG 4 cut(s) 55, 123, 267, 776
BseMI GCAATG 2 cut(s) 433, 847
BseMII CTCAG 1 cut(s) 906
BseNI ACTGG 1 cut(s) 346
BseRI GAGGAG 2 cut(s) 125, 998
BseSI GKGCMC 2 cut(s) 599, 913
BshFI GGCC 3 cut(s) 911, 949, 1090
BsiSI CCGG 1 cut(s) 770
BslI CCNNNNNNNGG 4 cut(s) 55, 123, 267, 776
BsmAI GTCTC 1 cut(s) 332
BsnI GGCC 3 cut(s) 911, 949, 1090
Bsp119I TTCGAA 1 cut(s) 1202
Bsp120I GGGCCC 1 cut(s) 909
Bsp1286I GDGCHC 2 cut(s) 599, 913
Bsp143I GATC 4 cut(s) 142, 181, 475, 936
Bsp19I CCATGG 1 cut(s) 941
BspACI CCGC 2 cut(s) 160, 589
BspANI GGCC 3 cut(s) 911, 949, 1090
BspCNI CTCAG 1 cut(s) 907
BspLI GGNNCC 3 cut(s) 477, 911, 912
BspPI GGATC 4 cut(s) 137, 470, 483, 931
BspT104I TTCGAA 1 cut(s) 1202
BspTI CTTAAG 1 cut(s) 1042
BsrDI GCAATG 2 cut(s) 433, 847
BsrI ACTGG 1 cut(s) 346
BssECI CCNNGG 2 cut(s) 941, 1091
BssMI GATC 4 cut(s) 142, 181, 475, 936
BssSI CACGAG 2 cut(s) 110, 980
BssT1I CCWWGG 1 cut(s) 941
Bst2BI CACGAG 2 cut(s) 110, 980
Bst2UI CCWGG 2 cut(s) 897, 1092
Bst4CI ACNGT 1 cut(s) 1003
Bst6I CTCTTC 1 cut(s) 1071
BstAFI CTTAAG 1 cut(s) 1042
BstBAI YACGTR 1 cut(s) 837
BstBI TTCGAA 1 cut(s) 1202
BstC8I GCNNGC 5 cut(s) 107, 424, 496, 622, 1149
BstDEI CTNAG 2 cut(s) 369, 915
BstDSI CCRYGG 1 cut(s) 941
BstF5I GGATG 3 cut(s) 171, 597, 670
BstH2I RGCGCY 1 cut(s) 243
BstHHI GCGC 2 cut(s) 129, 242
BstKTI GATC 4 cut(s) 145, 184, 478, 939
BstMAI GTCTC 1 cut(s) 332
BstMBI GATC 4 cut(s) 142, 181, 475, 936
BstMWI GCNNNNNNNGC 3 cut(s) 168, 423, 442
BstNI CCWGG 2 cut(s) 897, 1092
BstSCI CCNGG 3 cut(s) 768, 895, 1090
BstSFI CTRYAG 1 cut(s) 229
BstSLI GKGCMC 2 cut(s) 599, 913
BstX2I RGATCY 1 cut(s) 475
BstXI CCANNNNNNTGG 1 cut(s) 665
BstYI RGATCY 1 cut(s) 475
BsuI GTATCC 2 cut(s) 369, 893
BsuRI GGCC 3 cut(s) 911, 949, 1090
BtgI CCRYGG 1 cut(s) 941
BtgZI GCGATG 1 cut(s) 513
BtsCI GGATG 3 cut(s) 171, 597, 670
BtsIMutI CAGTG 2 cut(s) 413, 999
Cac8I GCNNGC 5 cut(s) 107, 424, 496, 622, 1149
CfoI GCGC 2 cut(s) 129, 242
Cfr13I GGNCC 3 cut(s) 909, 910, 1088
Csp6I GTAC 1 cut(s) 790
CviAII CATG 3 cut(s) 179, 776, 942
CviQI GTAC 1 cut(s) 790
DdeI CTNAG 2 cut(s) 369, 915
DpnI GATC 4 cut(s) 144, 183, 477, 938
DpnII GATC 4 cut(s) 142, 181, 475, 936
EaeI YGGCCR 1 cut(s) 947
Eam1104I CTCTTC 1 cut(s) 1071
EarI CTCTTC 1 cut(s) 1071
Eco130I CCWWGG 1 cut(s) 941
Eco24I GRGCYC 1 cut(s) 913
Eco47III AGCGCT 1 cut(s) 241
Eco72I CACGTG 1 cut(s) 837
EcoO109I RGGNCCY 2 cut(s) 910, 1088
EcoRII CCWGG 2 cut(s) 895, 1090
EcoT14I CCWWGG 1 cut(s) 941
EcoT22I ATGCAT 1 cut(s) 173
EcoT38I GRGCYC 1 cut(s) 913
ErhI CCWWGG 1 cut(s) 941
FaeI CATG 3 cut(s) 182, 779, 945
FalI AAGNNNNNCTT 4 cut(s) 406, 438, 1197, 1229
FatI CATG 3 cut(s) 178, 775, 941
FbaI TGATCA 1 cut(s) 181
FblI GTMKAC 2 cut(s) 73, 1014
FokI GGATG 3 cut(s) 158, 604, 677
FriOI GRGCYC 1 cut(s) 913
FspBI CTAG 1 cut(s) 1231
GlaI GCGC 2 cut(s) 128, 241
HaeII RGCGCY 1 cut(s) 243
HaeIII GGCC 3 cut(s) 911, 949, 1090
HapII CCGG 1 cut(s) 770
HhaI GCGC 2 cut(s) 129, 242
Hin1II CATG 3 cut(s) 182, 779, 945
Hin6I GCGC 2 cut(s) 127, 240
HinP1I GCGC 2 cut(s) 127, 240
HincII GTYRAC 2 cut(s) 74, 157
HindII GTYRAC 2 cut(s) 74, 157
HinfI GANTC 3 cut(s) 75, 223, 1161
HpaI GTTAAC 1 cut(s) 157
HpaII CCGG 1 cut(s) 770
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 5 cut(s) 74, 157, 686, 790, 1015
Hpy188I TCNGA 4 cut(s) 142, 201, 337, 712
Hpy188III TCNNGA 2 cut(s) 848, 980
Hpy8I GTNNAC 5 cut(s) 74, 157, 686, 790, 1015
HpyCH4III ACNGT 1 cut(s) 1003
HpyCH4IV ACGT 1 cut(s) 836
HpyCH4V TGCA 7 cut(s) 105, 171, 426, 530, 545, 722, 840
HpyF10VI GCNNNNNNNGC 3 cut(s) 168, 423, 442
HpyF3I CTNAG 2 cut(s) 369, 915
HpySE526I ACGT 1 cut(s) 836
Hsp92II CATG 3 cut(s) 182, 779, 945
HspAI GCGC 2 cut(s) 127, 240
Ksp22I TGATCA 1 cut(s) 181
KspAI GTTAAC 1 cut(s) 157
Kzo9I GATC 4 cut(s) 142, 181, 475, 936
LweI GCATC 4 cut(s) 92, 180, 517, 532
MaeI CTAG 1 cut(s) 1231
MaeII ACGT 1 cut(s) 836
MaeIII GTNAC 2 cut(s) 211, 832
MalI GATC 4 cut(s) 144, 183, 477, 938
MboI GATC 4 cut(s) 142, 181, 475, 936
MboII GAAGA 5 cut(s) 324, 693, 1088, 1093, 1142
MfeI CAATTG 1 cut(s) 1058
MflI RGATCY 1 cut(s) 475
MhlI GDGCHC 2 cut(s) 599, 913
MlsI TGGCCA 1 cut(s) 949
MluCI AATT 4 cut(s) 462, 876, 957, 1058
MluNI TGGCCA 1 cut(s) 949
MlyI GAGTC 1 cut(s) 69
MmeI TCCRAC 3 cut(s) 199, 453, 986
MnlI CCTC 6 cut(s) 90, 143, 146, 345, 449, 976
Mox20I TGGCCA 1 cut(s) 949
Mph1103I ATGCAT 1 cut(s) 173
MscI TGGCCA 1 cut(s) 949
MseI TTAA 7 cut(s) 33, 156, 255, 743, 1029, 1043, 1053
MslI CAYNNNNRTG 2 cut(s) 567, 1113
Msp20I TGGCCA 1 cut(s) 949
MspCI CTTAAG 1 cut(s) 1042
MspI CCGG 1 cut(s) 770
MspR9I CCNGG 3 cut(s) 770, 897, 1092
MunI CAATTG 1 cut(s) 1058
MvaI CCWGG 2 cut(s) 897, 1092
MwoI GCNNNNNNNGC 3 cut(s) 168, 423, 442
NciI CCSGG 1 cut(s) 770
NcoI CCATGG 1 cut(s) 941
NdeII GATC 4 cut(s) 142, 181, 475, 936
NlaIII CATG 3 cut(s) 182, 779, 945
NlaIV GGNNCC 3 cut(s) 477, 911, 912
NmeAIII GCCGAG 1 cut(s) 286
NmuCI GTSAC 1 cut(s) 832
NsiI ATGCAT 1 cut(s) 173
NspV TTCGAA 1 cut(s) 1202
PfeI GAWTC 2 cut(s) 223, 1161
PflMI CCANNNNNTGG 1 cut(s) 123
PfoI TCCNGGA 1 cut(s) 895
PleI GAGTC 1 cut(s) 69
PmaCI CACGTG 1 cut(s) 837
PmlI CACGTG 1 cut(s) 837
PpsI GAGTC 1 cut(s) 69
Ppu21I YACGTR 1 cut(s) 837
PshBI ATTAAT 1 cut(s) 33
Psp6I CCWGG 2 cut(s) 895, 1090
PspCI CACGTG 1 cut(s) 837
PspGI CCWGG 2 cut(s) 895, 1090
PspN4I GGNNCC 3 cut(s) 477, 911, 912
PspOMI GGGCCC 1 cut(s) 909
PspPI GGNCC 3 cut(s) 909, 910, 1088
PsuI RGATCY 1 cut(s) 475
RsaI GTAC 1 cut(s) 791
RsaNI GTAC 1 cut(s) 790
RseI CAYNNNNRTG 2 cut(s) 567, 1113
SalI GTCGAC 1 cut(s) 72
SaqAI TTAA 7 cut(s) 33, 156, 255, 743, 1029, 1043, 1053
Sau3AI GATC 4 cut(s) 142, 181, 475, 936
Sau96I GGNCC 3 cut(s) 909, 910, 1088
SchI GAGTC 1 cut(s) 69
ScrFI CCNGG 3 cut(s) 770, 897, 1092
SduI GDGCHC 2 cut(s) 599, 913
SfaNI GCATC 4 cut(s) 92, 180, 517, 532
SfcI CTRYAG 1 cut(s) 229
SfuI TTCGAA 1 cut(s) 1202
SmiMI CAYNNNNRTG 2 cut(s) 567, 1113
SmlI CTYRAG 1 cut(s) 1042
SmoI CTYRAG 1 cut(s) 1042
Sse9I AATT 4 cut(s) 462, 876, 957, 1058
SsiI CCGC 2 cut(s) 160, 589
SspI AATATT 1 cut(s) 487
SspMI CTAG 1 cut(s) 1231
StyD4I CCNGG 3 cut(s) 768, 895, 1090
StyI CCWWGG 1 cut(s) 941
TaaI ACNGT 1 cut(s) 1003
TaiI ACGT 1 cut(s) 839
TaqI TCGA 4 cut(s) 60, 73, 100, 1202
TasI AATT 4 cut(s) 462, 876, 957, 1058
TatI WGTACW 1 cut(s) 789
TfiI GAWTC 2 cut(s) 223, 1161
Tru1I TTAA 7 cut(s) 33, 156, 255, 743, 1029, 1043, 1053
Tru9I TTAA 7 cut(s) 33, 156, 255, 743, 1029, 1043, 1053
TscAI CASTG 2 cut(s) 413, 1006
TseFI GTSAC 1 cut(s) 832
Tsp45I GTSAC 1 cut(s) 832
TspDTI ATGAA 6 cut(s) 511, 662, 680, 724, 764, 1116
TspGWI ACGGA 2 cut(s) 468, 468
TspRI CASTG 2 cut(s) 413, 1006
Van91I CCANNNNNTGG 1 cut(s) 123
Vha464I CTTAAG 1 cut(s) 1042
VspI ATTAAT 1 cut(s) 33
XapI RAATTY 1 cut(s) 876
XcmI CCANNNNNNNNNTGG 1 cut(s) 773
XmiI GTMKAC 2 cut(s) 73, 1014
XspI CTAG 1 cut(s) 1231
Zsp2I ATGCAT 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.