Rh3DG022400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000270
Physical Location & Seq
Forward (+)
1473211 .. 1473729
519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG022400.1

Sequence Viewer

Length: 519 bp
ATGGTTGCAAAACAACCTTTCATCACTTTACATTTTGCAATCGTAGATTTCCACCCAGTTCATGGGGATATAGTGTACTTACAAAATAACGATATATATAGTGAGCCAAGATACATAGTCACGTGCAATGTTCGCGAAAGAACATTAGAGATAGCTACAAAAATTCCATTTGAGAATAGTCCTGGATACGCTTGGGCCCCTGAGCAGATTTGCCACAATGTGATCCCATGGTGGCCAACACCAATTCCAAAAAGACTAAACTACCACGAGGAGTACCTAAATATCACTGTGATTAGTGTAGACATCTTTACTATTAAGGTAGGTTGCTTAAGTAATGTTAAGCAATTGAAACAAAAAATTGAAGAGAAGAAAGGGCCTGGGCAGCATGAACTACATTTTGATGGGCGAGTTTTAGAAGATGATGACAAGTGGCTTGCAGATTATGGAATCAAGGACAAATCTAAGATTTACATTGGCGAACATTGTTCAAAAGAGTGGCTTGTGTCAGAGCCTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

172

Amino Acids

20.07

Weight (kDa)

5.97

Isoelectric Point (pI)

34.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 94 - 156 1.1e-09 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 62
AccI GTMKAC 1 cut(s) 300
AccII CGCG 1 cut(s) 135
AclWI GGATC 1 cut(s) 217
AcoI YGGCCR 1 cut(s) 233
AcsI RAATTY 1 cut(s) 162
AcvI CACGTG 1 cut(s) 123
AdeI CACNNNGTG 1 cut(s) 220
AfaI GTAC 2 cut(s) 77, 275
AfiI CCNNNNNNNGG 1 cut(s) 62
AflII CTTAAG 1 cut(s) 328
AgsI TTSAA 3 cut(s) 349, 362, 489
AjnI CCWGG 2 cut(s) 181, 376
AluBI AGCT 1 cut(s) 155
AluI AGCT 1 cut(s) 155
AlwI GGATC 1 cut(s) 217
AoxI GGCC 3 cut(s) 195, 233, 374
ApaI GGGCCC 1 cut(s) 199
ApeKI GCWGC 1 cut(s) 382
ApoI RAATTY 1 cut(s) 162
AspS9I GGNCC 3 cut(s) 195, 196, 374
BaeGI GKGCMC 1 cut(s) 199
BalI TGGCCA 1 cut(s) 235
BanII GRGCYC 1 cut(s) 199
BauI CACGAG 1 cut(s) 266
BbrPI CACGTG 1 cut(s) 123
BbvI GCAGC 1 cut(s) 394
BccI CCATC 1 cut(s) 395
BciT130I CCWGG 2 cut(s) 183, 378
BciVI GTATCC 1 cut(s) 179
BfaI CTAG 1 cut(s) 517
BfrI CTTAAG 1 cut(s) 328
BfuI GTATCC 1 cut(s) 179
BisI GCNGC 1 cut(s) 383
BlsI GCNGC 1 cut(s) 384
Bme1390I CCNGG 2 cut(s) 183, 378
BmgT120I GGNCC 3 cut(s) 195, 196, 374
BmiI GGNNCC 2 cut(s) 197, 198
BmrFI CCNGG 2 cut(s) 183, 378
BmrI ACTGGG 1 cut(s) 50
BmuI ACTGGG 1 cut(s) 50
Bpu10I CCTNAGC 1 cut(s) 201
BsaAI YACGTR 1 cut(s) 123
BsaJI CCNNGG 2 cut(s) 227, 377
Bsc4I CCNNNNNNNGG 1 cut(s) 62
Bse1I ACTGG 1 cut(s) 56
Bse3DI GCAATG 1 cut(s) 133
BseBI CCWGG 2 cut(s) 183, 378
BseDI CCNNGG 2 cut(s) 227, 377
BseLI CCNNNNNNNGG 1 cut(s) 62
BseMI GCAATG 1 cut(s) 133
BseMII CTCAG 1 cut(s) 192
BseNI ACTGG 1 cut(s) 56
BseRI GAGGAG 1 cut(s) 284
BseSI GKGCMC 1 cut(s) 199
BseXI GCAGC 1 cut(s) 394
Bsh1236I CGCG 1 cut(s) 135
BshFI GGCC 3 cut(s) 197, 235, 376
BslI CCNNNNNNNGG 1 cut(s) 62
BsnI GGCC 3 cut(s) 197, 235, 376
Bsp120I GGGCCC 1 cut(s) 195
Bsp1286I GDGCHC 1 cut(s) 199
Bsp143I GATC 1 cut(s) 222
Bsp19I CCATGG 1 cut(s) 227
Bsp68I TCGCGA 1 cut(s) 135
BspANI GGCC 3 cut(s) 197, 235, 376
BspCNI CTCAG 1 cut(s) 193
BspFNI CGCG 1 cut(s) 135
BspLI GGNNCC 2 cut(s) 197, 198
BspPI GGATC 1 cut(s) 217
BspTI CTTAAG 1 cut(s) 328
BsrDI GCAATG 1 cut(s) 133
BsrI ACTGG 1 cut(s) 56
BssECI CCNNGG 2 cut(s) 227, 377
BssMI GATC 1 cut(s) 222
BssSI CACGAG 1 cut(s) 266
BssT1I CCWWGG 1 cut(s) 227
Bst2BI CACGAG 1 cut(s) 266
Bst2UI CCWGG 2 cut(s) 183, 378
Bst4CI ACNGT 1 cut(s) 289
Bst6I CTCTTC 1 cut(s) 357
BstAFI CTTAAG 1 cut(s) 328
BstBAI YACGTR 1 cut(s) 123
BstC8I GCNNGC 1 cut(s) 435
BstDEI CTNAG 2 cut(s) 201, 462
BstDSI CCRYGG 1 cut(s) 227
BstFNI CGCG 1 cut(s) 135
BstKTI GATC 1 cut(s) 225
BstMBI GATC 1 cut(s) 222
BstMWI GCNNNNNNNGC 2 cut(s) 132, 382
BstNI CCWGG 2 cut(s) 183, 378
BstSCI CCNGG 2 cut(s) 181, 376
BstSLI GKGCMC 1 cut(s) 199
BstUI CGCG 1 cut(s) 135
BstV1I GCAGC 1 cut(s) 394
BsuI GTATCC 1 cut(s) 179
BsuRI GGCC 3 cut(s) 197, 235, 376
BtgI CCRYGG 1 cut(s) 227
BtsIMutI CAGTG 1 cut(s) 285
BtuMI TCGCGA 1 cut(s) 135
Cac8I GCNNGC 1 cut(s) 435
Cfr13I GGNCC 3 cut(s) 195, 196, 374
Csp6I GTAC 2 cut(s) 76, 274
CviAII CATG 3 cut(s) 62, 228, 386
CviJI RGCY 8 cut(s) 106, 155, 197, 235, 376, 433, 499, 511
CviKI_1 RGCY 8 cut(s) 106, 155, 197, 235, 376, 433, 499, 511
CviQI GTAC 2 cut(s) 76, 274
DdeI CTNAG 2 cut(s) 201, 462
DpnI GATC 1 cut(s) 224
DpnII GATC 1 cut(s) 222
DraIII CACNNNGTG 1 cut(s) 220
EaeI YGGCCR 1 cut(s) 233
Eam1104I CTCTTC 1 cut(s) 357
EarI CTCTTC 1 cut(s) 357
Eco130I CCWWGG 1 cut(s) 227
Eco24I GRGCYC 1 cut(s) 199
Eco72I CACGTG 1 cut(s) 123
EcoO109I RGGNCCY 2 cut(s) 196, 374
EcoRII CCWGG 2 cut(s) 181, 376
EcoT14I CCWWGG 1 cut(s) 227
EcoT38I GRGCYC 1 cut(s) 199
ErhI CCWWGG 1 cut(s) 227
FaeI CATG 3 cut(s) 65, 231, 389
FaiI YATR 9 cut(s) 63, 71, 95, 97, 99, 116, 229, 387, 444
FalI AAGNNNNNCTT 2 cut(s) 483, 515
FatI CATG 3 cut(s) 61, 227, 385
FblI GTMKAC 1 cut(s) 300
Fnu4HI GCNGC 1 cut(s) 383
FriOI GRGCYC 1 cut(s) 199
Fsp4HI GCNGC 1 cut(s) 383
FspBI CTAG 1 cut(s) 517
GluI GCNGC 1 cut(s) 383
HaeIII GGCC 3 cut(s) 197, 235, 376
Hin1II CATG 3 cut(s) 65, 231, 389
HinfI GANTC 1 cut(s) 447
Hpy166II GTNNAC 2 cut(s) 76, 301
Hpy188I TCNGA 1 cut(s) 508
Hpy188III TCNNGA 1 cut(s) 134
Hpy8I GTNNAC 2 cut(s) 76, 301
HpyCH4III ACNGT 1 cut(s) 289
HpyCH4IV ACGT 1 cut(s) 122
HpyCH4V TGCA 4 cut(s) 8, 38, 126, 437
HpyF10VI GCNNNNNNNGC 2 cut(s) 132, 382
HpyF3I CTNAG 2 cut(s) 201, 462
HpySE526I ACGT 1 cut(s) 122
Hsp92II CATG 3 cut(s) 65, 231, 389
Kzo9I GATC 1 cut(s) 222
LpnPI CCDG 6 cut(s) 69, 168, 195, 213, 363, 390
Lsp1109I GCAGC 1 cut(s) 394
MaeI CTAG 1 cut(s) 517
MaeII ACGT 1 cut(s) 122
MaeIII GTNAC 1 cut(s) 118
MalI GATC 1 cut(s) 224
MboI GATC 1 cut(s) 222
MboII GAAGA 3 cut(s) 374, 379, 428
MfeI CAATTG 1 cut(s) 344
MhlI GDGCHC 1 cut(s) 199
MlsI TGGCCA 1 cut(s) 235
MluCI AATT 4 cut(s) 162, 243, 344, 357
MluNI TGGCCA 1 cut(s) 235
MnlI CCTC 1 cut(s) 262
Mox20I TGGCCA 1 cut(s) 235
MscI TGGCCA 1 cut(s) 235
MseI TTAA 3 cut(s) 315, 329, 339
MslI CAYNNNNRTG 1 cut(s) 399
Msp20I TGGCCA 1 cut(s) 235
MspCI CTTAAG 1 cut(s) 328
MspR9I CCNGG 2 cut(s) 183, 378
MunI CAATTG 1 cut(s) 344
MvaI CCWGG 2 cut(s) 183, 378
MvnI CGCG 1 cut(s) 135
MwoI GCNNNNNNNGC 2 cut(s) 132, 382
NcoI CCATGG 1 cut(s) 227
NdeII GATC 1 cut(s) 222
NlaIII CATG 3 cut(s) 65, 231, 389
NlaIV GGNNCC 2 cut(s) 197, 198
NmuCI GTSAC 1 cut(s) 118
NruI TCGCGA 1 cut(s) 135
PfeI GAWTC 1 cut(s) 447
PflMI CCANNNNNTGG 1 cut(s) 62
PfoI TCCNGGA 1 cut(s) 181
PkrI GCNGC 1 cut(s) 384
PmaCI CACGTG 1 cut(s) 123
PmlI CACGTG 1 cut(s) 123
Ppu21I YACGTR 1 cut(s) 123
Psp6I CCWGG 2 cut(s) 181, 376
PspCI CACGTG 1 cut(s) 123
PspGI CCWGG 2 cut(s) 181, 376
PspN4I GGNNCC 2 cut(s) 197, 198
PspOMI GGGCCC 1 cut(s) 195
PspPI GGNCC 3 cut(s) 195, 196, 374
RruI TCGCGA 1 cut(s) 135
RsaI GTAC 2 cut(s) 77, 275
RsaNI GTAC 2 cut(s) 76, 274
RseI CAYNNNNRTG 1 cut(s) 399
SaqAI TTAA 3 cut(s) 315, 329, 339
SatI GCNGC 1 cut(s) 383
Sau3AI GATC 1 cut(s) 222
Sau96I GGNCC 3 cut(s) 195, 196, 374
ScrFI CCNGG 2 cut(s) 183, 378
SduI GDGCHC 1 cut(s) 199
SetI ASST 6 cut(s) 19, 125, 157, 279, 321, 325
SmiMI CAYNNNNRTG 1 cut(s) 399
SmlI CTYRAG 1 cut(s) 328
SmoI CTYRAG 1 cut(s) 328
Sse9I AATT 4 cut(s) 162, 243, 344, 357
SspMI CTAG 1 cut(s) 517
StyD4I CCNGG 2 cut(s) 181, 376
StyI CCWWGG 1 cut(s) 227
TaaI ACNGT 1 cut(s) 289
TaiI ACGT 1 cut(s) 125
TasI AATT 4 cut(s) 162, 243, 344, 357
TatI WGTACW 1 cut(s) 75
TfiI GAWTC 1 cut(s) 447
Tru1I TTAA 3 cut(s) 315, 329, 339
Tru9I TTAA 3 cut(s) 315, 329, 339
TscAI CASTG 1 cut(s) 292
TseFI GTSAC 1 cut(s) 118
TseI GCWGC 1 cut(s) 382
Tsp45I GTSAC 1 cut(s) 118
TspDTI ATGAA 3 cut(s) 10, 50, 402
TspRI CASTG 1 cut(s) 292
Van91I CCANNNNNTGG 1 cut(s) 62
Vha464I CTTAAG 1 cut(s) 328
XapI RAATTY 1 cut(s) 162
XcmI CCANNNNNNNNNTGG 1 cut(s) 59
XmiI GTMKAC 1 cut(s) 300
XspI CTAG 1 cut(s) 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.