Prupe.2G073200_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0000270
Physical Location & Seq
Forward (+)
11070574 .. 11071144
571 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G073200.1

Sequence Viewer

Length: 342 bp
ATGGCGTGCCCTGATTGGAGACGAAAATATATGCTTCCACACCCTTCTTATTGGCCGGCAATTGAAGGCCTAGGTGATGTGTTGGAAGTTGAGTGCCTAGGTGTGTGTCAAGGCTGTCTGCGGATGTTCAACTTCGAATTGATGACAGGTACTCTCTTAGTTTGGTATTTCAAATTAGTAGAACCAGCTGATCAGATGGTCAATGGAGGCAACTGTTTGATTTCCATGGACCCAGAAATACTCCTTTCCAATGCGGTGATTTTCTCTCATAACGAATTAGACATGCATTGGATTAAGAAAAAGATCGGCACCAAAGTGTTGTTACTCCCTTCCTACCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

114

Amino Acids

12.97

Weight (kDa)

5.72

Isoelectric Point (pI)

52.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 308
AciI CCGC 2 cut(s) 121, 254
AcoI YGGCCR 1 cut(s) 53
AfaI GTAC 1 cut(s) 151
AgsI TTSAA 3 cut(s) 65, 130, 172
AleI CACNNNNGTG 1 cut(s) 314
AluBI AGCT 1 cut(s) 188
AluI AGCT 1 cut(s) 188
Alw26I GTCTC 1 cut(s) 13
AoxI GGCC 2 cut(s) 53, 67
AspA2I CCTAGG 2 cut(s) 70, 97
AspS9I GGNCC 1 cut(s) 229
AsuHPI GGTGA 2 cut(s) 86, 268
AsuII TTCGAA 1 cut(s) 135
AvaII GGWCC 1 cut(s) 229
AvrII CCTAGG 2 cut(s) 70, 97
BaeGI GKGCMC 1 cut(s) 11
BanI GGYRCC 1 cut(s) 308
BccI CCATC 1 cut(s) 190
BclI TGATCA 1 cut(s) 190
BcoDI GTCTC 1 cut(s) 13
BfaI CTAG 2 cut(s) 71, 98
BlnI CCTAGG 2 cut(s) 70, 97
Bme18I GGWCC 1 cut(s) 229
BmgT120I GGNCC 1 cut(s) 229
BmiI GGNNCC 2 cut(s) 231, 310
Bpu14I TTCGAA 1 cut(s) 135
BsaJI CCNNGG 3 cut(s) 70, 97, 225
Bse118I RCCGGY 1 cut(s) 55
BseDI CCNNGG 3 cut(s) 70, 97, 225
BseGI GGATG 1 cut(s) 129
BseSI GKGCMC 1 cut(s) 11
BshFI GGCC 2 cut(s) 55, 69
BshNI GGYRCC 1 cut(s) 308
BsiSI CCGG 1 cut(s) 56
BsmAI GTCTC 1 cut(s) 13
BsmBI CGTCTC 1 cut(s) 13
BsnI GGCC 2 cut(s) 55, 69
Bsp119I TTCGAA 1 cut(s) 135
Bsp1286I GDGCHC 1 cut(s) 11
Bsp143I GATC 2 cut(s) 190, 303
Bsp19I CCATGG 1 cut(s) 225
BspACI CCGC 2 cut(s) 121, 254
BspANI GGCC 2 cut(s) 55, 69
BspLI GGNNCC 2 cut(s) 231, 310
BspT104I TTCGAA 1 cut(s) 135
BspT107I GGYRCC 1 cut(s) 308
BsrFI RCCGGY 1 cut(s) 55
BssAI RCCGGY 1 cut(s) 55
BssECI CCNNGG 3 cut(s) 70, 97, 225
BssMI GATC 2 cut(s) 190, 303
BssT1I CCWWGG 3 cut(s) 70, 97, 225
Bst4CI ACNGT 1 cut(s) 215
BstBI TTCGAA 1 cut(s) 135
BstC8I GCNNGC 2 cut(s) 7, 57
BstDEI CTNAG 1 cut(s) 157
BstDSI CCRYGG 1 cut(s) 225
BstF5I GGATG 1 cut(s) 129
BstKTI GATC 2 cut(s) 193, 306
BstMAI GTCTC 1 cut(s) 13
BstMBI GATC 2 cut(s) 190, 303
BstNSI RCATGY 1 cut(s) 286
BstSLI GKGCMC 1 cut(s) 11
BsuRI GGCC 2 cut(s) 55, 69
BtgI CCRYGG 1 cut(s) 225
BtsCI GGATG 1 cut(s) 129
Cac8I GCNNGC 2 cut(s) 7, 57
Cfr10I RCCGGY 1 cut(s) 55
Cfr13I GGNCC 1 cut(s) 229
Csp6I GTAC 1 cut(s) 150
CviAII CATG 2 cut(s) 226, 283
CviJI RGCY 4 cut(s) 55, 69, 114, 188
CviKI_1 RGCY 4 cut(s) 55, 69, 114, 188
CviQI GTAC 1 cut(s) 150
DdeI CTNAG 1 cut(s) 157
DpnI GATC 2 cut(s) 192, 305
DpnII GATC 2 cut(s) 190, 303
EaeI YGGCCR 1 cut(s) 53
Eco130I CCWWGG 3 cut(s) 70, 97, 225
Eco147I AGGCCT 1 cut(s) 69
Eco47I GGWCC 1 cut(s) 229
EcoT14I CCWWGG 3 cut(s) 70, 97, 225
EcoT22I ATGCAT 1 cut(s) 288
ErhI CCWWGG 3 cut(s) 70, 97, 225
Esp3I CGTCTC 1 cut(s) 13
FaeI CATG 2 cut(s) 229, 286
FaiI YATR 5 cut(s) 30, 32, 227, 270, 284
FatI CATG 2 cut(s) 225, 282
FbaI TGATCA 1 cut(s) 190
FokI GGATG 1 cut(s) 136
FspBI CTAG 2 cut(s) 71, 98
HaeIII GGCC 2 cut(s) 55, 69
HapII CCGG 1 cut(s) 56
Hin1II CATG 2 cut(s) 229, 286
HpaII CCGG 1 cut(s) 56
HphI GGTGA 2 cut(s) 86, 268
Hpy188I TCNGA 1 cut(s) 195
HpyAV CCTTC 3 cut(s) 54, 59, 339
HpyCH4III ACNGT 1 cut(s) 215
HpyCH4V TGCA 1 cut(s) 286
HpyF3I CTNAG 1 cut(s) 157
Hsp92II CATG 2 cut(s) 229, 286
KroI GCCGGC 1 cut(s) 55
KroNI GCCGGC 1 cut(s) 57
Ksp22I TGATCA 1 cut(s) 190
Kzo9I GATC 2 cut(s) 190, 303
LpnPI CCDG 5 cut(s) 24, 69, 132, 198, 246
MaeI CTAG 2 cut(s) 71, 98
MaeIII GTNAC 1 cut(s) 321
MalI GATC 2 cut(s) 192, 305
MboI GATC 2 cut(s) 190, 303
MfeI CAATTG 1 cut(s) 60
MhlI GDGCHC 1 cut(s) 11
MluCI AATT 4 cut(s) 60, 137, 173, 275
MmeI TCCRAC 1 cut(s) 63
MnlI CCTC 1 cut(s) 200
Mph1103I ATGCAT 1 cut(s) 288
MroNI GCCGGC 1 cut(s) 55
MseI TTAA 1 cut(s) 294
MslI CAYNNNNRTG 1 cut(s) 314
MspA1I CMGCKG 1 cut(s) 188
MspI CCGG 1 cut(s) 56
MunI CAATTG 1 cut(s) 60
NaeI GCCGGC 1 cut(s) 57
NcoI CCATGG 1 cut(s) 225
NdeII GATC 2 cut(s) 190, 303
NgoMIV GCCGGC 1 cut(s) 55
NlaIII CATG 2 cut(s) 229, 286
NlaIV GGNNCC 2 cut(s) 231, 310
NsiI ATGCAT 1 cut(s) 288
NspI RCATGY 1 cut(s) 286
NspV TTCGAA 1 cut(s) 135
OliI CACNNNNGTG 1 cut(s) 314
PceI AGGCCT 1 cut(s) 69
PdiI GCCGGC 1 cut(s) 57
PspN4I GGNNCC 2 cut(s) 231, 310
PspPI GGNCC 1 cut(s) 229
PvuII CAGCTG 1 cut(s) 188
RsaI GTAC 1 cut(s) 151
RsaNI GTAC 1 cut(s) 150
RseI CAYNNNNRTG 1 cut(s) 314
SaqAI TTAA 1 cut(s) 294
Sau3AI GATC 2 cut(s) 190, 303
Sau96I GGNCC 1 cut(s) 229
SduI GDGCHC 1 cut(s) 11
SetI ASST 4 cut(s) 76, 103, 151, 190
SfuI TTCGAA 1 cut(s) 135
SinI GGWCC 1 cut(s) 229
SmiMI CAYNNNNRTG 1 cut(s) 314
Sse9I AATT 4 cut(s) 60, 137, 173, 275
SseBI AGGCCT 1 cut(s) 69
SsiI CCGC 2 cut(s) 121, 254
SspMI CTAG 2 cut(s) 71, 98
StuI AGGCCT 1 cut(s) 69
StyI CCWWGG 3 cut(s) 70, 97, 225
TaaI ACNGT 1 cut(s) 215
TaqI TCGA 1 cut(s) 135
TasI AATT 4 cut(s) 60, 137, 173, 275
Tru1I TTAA 1 cut(s) 294
Tru9I TTAA 1 cut(s) 294
VpaK11BI GGWCC 1 cut(s) 229
XceI RCATGY 1 cut(s) 286
XmaJI CCTAGG 2 cut(s) 70, 97
XspI CTAG 2 cut(s) 71, 98
Zsp2I ATGCAT 1 cut(s) 288
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.