Rh3DG022700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0000270
Physical Location & Seq
Forward (+)
1499099 .. 1499452
354 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG022700.1

Sequence Viewer

Length: 354 bp
ATGAAAGAAAACCAAGTGGATGGCAAACCAGAATGGTGTTTACTTCATCACATATCTTCTCTGTCAGAGATGGTTGCAAAACAACCTTTCATCACTTTAAGATTTGAAATCGTAGGTCTCCACCCTGTTCATGGGGATATAGTGTACTTACAAAATAACGATATATATAGTGAGCCAAGATACATAGTCACGTGCAATGTTCGTGAAAGAACATTAGAGATAGCTACAAAAATTCCATTTGAGAATAGTCCTGGATACGCTTGGGCCCCTGAGCAGATTTGCCACAATGTGATCCCATGGTGGCCAACACCAATTCCAACAAAGACTAAACTATCACGAGGAGTGCCTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

117

Amino Acids

13.5

Weight (kDa)

6.96

Isoelectric Point (pI)

41.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 286
AcoI YGGCCR 1 cut(s) 302
AcsI RAATTY 1 cut(s) 231
AcvI CACGTG 1 cut(s) 192
AdeI CACNNNGTG 1 cut(s) 289
AfaI GTAC 1 cut(s) 146
AfiI CCNNNNNNNGG 1 cut(s) 131
AgsI TTSAA 1 cut(s) 107
AjnI CCWGG 1 cut(s) 250
AluBI AGCT 1 cut(s) 224
AluI AGCT 1 cut(s) 224
Alw26I GTCTC 1 cut(s) 122
AlwI GGATC 1 cut(s) 286
AoxI GGCC 2 cut(s) 264, 302
ApaI GGGCCC 1 cut(s) 268
ApoI RAATTY 1 cut(s) 231
AspS9I GGNCC 2 cut(s) 264, 265
BaeGI GKGCMC 1 cut(s) 268
BalI TGGCCA 1 cut(s) 304
BanII GRGCYC 1 cut(s) 268
BauI CACGAG 1 cut(s) 336
BbrPI CACGTG 1 cut(s) 192
BccI CCATC 2 cut(s) 14, 64
BciT130I CCWGG 1 cut(s) 252
BciVI GTATCC 1 cut(s) 248
BcoDI GTCTC 1 cut(s) 122
BfuI GTATCC 1 cut(s) 248
Bme1390I CCNGG 1 cut(s) 252
BmgT120I GGNCC 2 cut(s) 264, 265
BmiI GGNNCC 2 cut(s) 266, 267
BmrFI CCNGG 1 cut(s) 252
Bpu10I CCTNAGC 1 cut(s) 270
BsaAI YACGTR 1 cut(s) 192
BsaI GGTCTC 1 cut(s) 122
BsaJI CCNNGG 1 cut(s) 296
Bsc4I CCNNNNNNNGG 1 cut(s) 131
Bse3DI GCAATG 1 cut(s) 202
BseBI CCWGG 1 cut(s) 252
BseDI CCNNGG 1 cut(s) 296
BseGI GGATG 1 cut(s) 25
BseLI CCNNNNNNNGG 1 cut(s) 131
BseMI GCAATG 1 cut(s) 202
BseMII CTCAG 1 cut(s) 261
BseRI GAGGAG 1 cut(s) 354
BseSI GKGCMC 1 cut(s) 268
BshFI GGCC 2 cut(s) 266, 304
BslI CCNNNNNNNGG 1 cut(s) 131
BsmAI GTCTC 1 cut(s) 122
BsnI GGCC 2 cut(s) 266, 304
Bso31I GGTCTC 1 cut(s) 122
Bsp120I GGGCCC 1 cut(s) 264
Bsp1286I GDGCHC 1 cut(s) 268
Bsp143I GATC 1 cut(s) 291
Bsp19I CCATGG 1 cut(s) 296
BspANI GGCC 2 cut(s) 266, 304
BspCNI CTCAG 1 cut(s) 262
BspLI GGNNCC 2 cut(s) 266, 267
BspPI GGATC 1 cut(s) 286
BspTNI GGTCTC 1 cut(s) 122
BsrDI GCAATG 1 cut(s) 202
BssECI CCNNGG 1 cut(s) 296
BssMI GATC 1 cut(s) 291
BssSI CACGAG 1 cut(s) 336
BssT1I CCWWGG 1 cut(s) 296
Bst2BI CACGAG 1 cut(s) 336
Bst2UI CCWGG 1 cut(s) 252
BstBAI YACGTR 1 cut(s) 192
BstDEI CTNAG 1 cut(s) 270
BstDSI CCRYGG 1 cut(s) 296
BstF5I GGATG 1 cut(s) 25
BstKTI GATC 1 cut(s) 294
BstMAI GTCTC 1 cut(s) 122
BstMBI GATC 1 cut(s) 291
BstNI CCWGG 1 cut(s) 252
BstSCI CCNGG 1 cut(s) 250
BstSLI GKGCMC 1 cut(s) 268
BstXI CCANNNNNNTGG 1 cut(s) 20
BsuI GTATCC 1 cut(s) 248
BsuRI GGCC 2 cut(s) 266, 304
BtgI CCRYGG 1 cut(s) 296
BtsCI GGATG 1 cut(s) 25
Cfr13I GGNCC 2 cut(s) 264, 265
Csp6I GTAC 1 cut(s) 145
CviAII CATG 2 cut(s) 131, 297
CviJI RGCY 4 cut(s) 175, 224, 266, 304
CviKI_1 RGCY 4 cut(s) 175, 224, 266, 304
CviQI GTAC 1 cut(s) 145
DdeI CTNAG 1 cut(s) 270
DpnI GATC 1 cut(s) 293
DpnII GATC 1 cut(s) 291
DraIII CACNNNGTG 1 cut(s) 289
EaeI YGGCCR 1 cut(s) 302
Eco130I CCWWGG 1 cut(s) 296
Eco24I GRGCYC 1 cut(s) 268
Eco31I GGTCTC 1 cut(s) 122
Eco72I CACGTG 1 cut(s) 192
EcoO109I RGGNCCY 1 cut(s) 265
EcoRII CCWGG 1 cut(s) 250
EcoT14I CCWWGG 1 cut(s) 296
EcoT38I GRGCYC 1 cut(s) 268
ErhI CCWWGG 1 cut(s) 296
FaeI CATG 2 cut(s) 134, 300
FaiI YATR 8 cut(s) 53, 132, 140, 164, 166, 168, 185, 298
FatI CATG 2 cut(s) 130, 296
FokI GGATG 1 cut(s) 32
FriOI GRGCYC 1 cut(s) 268
HaeIII GGCC 2 cut(s) 266, 304
Hin1II CATG 2 cut(s) 134, 300
Hpy166II GTNNAC 2 cut(s) 41, 145
Hpy188I TCNGA 1 cut(s) 67
Hpy188III TCNNGA 2 cut(s) 203, 336
Hpy8I GTNNAC 2 cut(s) 41, 145
HpyCH4IV ACGT 1 cut(s) 191
HpyCH4V TGCA 2 cut(s) 77, 195
HpyF3I CTNAG 1 cut(s) 270
HpySE526I ACGT 1 cut(s) 191
Hsp92II CATG 2 cut(s) 134, 300
Kzo9I GATC 1 cut(s) 291
LpnPI CCDG 5 cut(s) 42, 138, 237, 264, 282
MaeII ACGT 1 cut(s) 191
MaeIII GTNAC 1 cut(s) 187
MalI GATC 1 cut(s) 293
MboI GATC 1 cut(s) 291
MboII GAAGA 1 cut(s) 48
MhlI GDGCHC 1 cut(s) 268
MlsI TGGCCA 1 cut(s) 304
MluCI AATT 2 cut(s) 231, 312
MluNI TGGCCA 1 cut(s) 304
MmeI TCCRAC 1 cut(s) 341
MnlI CCTC 1 cut(s) 332
Mox20I TGGCCA 1 cut(s) 304
MscI TGGCCA 1 cut(s) 304
MseI TTAA 1 cut(s) 98
Msp20I TGGCCA 1 cut(s) 304
MspR9I CCNGG 1 cut(s) 252
MvaI CCWGG 1 cut(s) 252
NcoI CCATGG 1 cut(s) 296
NdeII GATC 1 cut(s) 291
NlaIII CATG 2 cut(s) 134, 300
NlaIV GGNNCC 2 cut(s) 266, 267
NmuCI GTSAC 1 cut(s) 187
PfoI TCCNGGA 1 cut(s) 250
PmaCI CACGTG 1 cut(s) 192
PmlI CACGTG 1 cut(s) 192
Ppu21I YACGTR 1 cut(s) 192
Psp6I CCWGG 1 cut(s) 250
PspCI CACGTG 1 cut(s) 192
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 2 cut(s) 266, 267
PspOMI GGGCCC 1 cut(s) 264
PspPI GGNCC 2 cut(s) 264, 265
RsaI GTAC 1 cut(s) 146
RsaNI GTAC 1 cut(s) 145
SaqAI TTAA 1 cut(s) 98
Sau3AI GATC 1 cut(s) 291
Sau96I GGNCC 2 cut(s) 264, 265
ScrFI CCNGG 1 cut(s) 252
SduI GDGCHC 1 cut(s) 268
SetI ASST 4 cut(s) 88, 118, 194, 226
Sse9I AATT 2 cut(s) 231, 312
StyD4I CCNGG 1 cut(s) 250
StyI CCWWGG 1 cut(s) 296
TaiI ACGT 1 cut(s) 194
TasI AATT 2 cut(s) 231, 312
TatI WGTACW 1 cut(s) 144
Tru1I TTAA 1 cut(s) 98
Tru9I TTAA 1 cut(s) 98
TseFI GTSAC 1 cut(s) 187
Tsp45I GTSAC 1 cut(s) 187
TspDTI ATGAA 4 cut(s) 17, 35, 79, 119
XapI RAATTY 1 cut(s) 231
XcmI CCANNNNNNNNNTGG 1 cut(s) 128
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.