Rmu_sc0004404.1_g000009

histidine-containing phosphotransfer protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004404.1
Physical Location & Seq
Reverse (-)
25766 .. 26895
1130 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004404.1_g000009.1.cds

Sequence Viewer

Length: 660 bp
atggctggtgtgtctcagttgcagaagcagtttgttgactacaaagcctcactctttcaagagggggttctggatgaacagtttgaccaacttcagggactacaagatgagagcaacccaaattttgtggttgaagtggtgtctctcttctttcaagattctgagaggcttctcaatgaccccaagactctaaaccagcagggtgttgacttcaaaaagaagcgtctgagtatttgggagttgaaagatgacgatgacgacaaggctgacggtagcgttgggaagtggtgtatgataaatacccctcctctggacaaaatggtttcggaaaatccattggtcaccgaatggagccgctcaagtgatcctgctgtggcagtagctttcgaccccaataatgatgacattttgtatgtaacatcgtatgacgaaattattatgtgcaacattcgtgcaaatacattgaaggaggttacaaccattgacggttggttaacctctgctttccgattcatggtgccatggtggccgacacctgttcctaaaattgagtacaacaaccacgagaatctgcatgcagcccatcttaacagttgtcttgtatgctcgtggcggcctctggatcccaatttgcttcttgcactagtatatggagaataa

Protein Analysis

219

Amino Acids

25.0

Weight (kDa)

4.45

Isoelectric Point (pI)

39.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 517
AccBSI CCGCTC 1 cut(s) 357
AciI CCGC 2 cut(s) 355, 613
AclWI GGATC 3 cut(s) 359, 617, 630
AcoI YGGCCR 1 cut(s) 527
AcsI RAATTY 1 cut(s) 121
AcuI CTGAAG 1 cut(s) 77
AfaI GTAC 1 cut(s) 554
AfiI CCNNNNNNNGG 3 cut(s) 94, 310, 514
AgsI TTSAA 6 cut(s) 59, 134, 155, 214, 244, 466
AhlI ACTAGT 1 cut(s) 643
AluBI AGCT 1 cut(s) 383
AluI AGCT 1 cut(s) 383
Alw26I GTCTC 2 cut(s) 18, 147
AlwI GGATC 3 cut(s) 359, 617, 630
AoxI GGCC 2 cut(s) 527, 614
ApeKI GCWGC 1 cut(s) 578
ApoI RAATTY 1 cut(s) 121
AsuHPI GGTGA 1 cut(s) 334
BamHI GGATCC 1 cut(s) 622
BanI GGYRCC 1 cut(s) 517
BauI CACGAG 2 cut(s) 563, 607
BbvI GCAGC 1 cut(s) 590
BccI CCATC 1 cut(s) 591
BcoDI GTCTC 2 cut(s) 18, 147
BcuI ACTAGT 1 cut(s) 643
BfaI CTAG 1 cut(s) 644
BglI GCCNNNNNGGC 1 cut(s) 526
BisI GCNGC 3 cut(s) 355, 579, 614
BlsI GCNGC 3 cut(s) 356, 580, 615
BmiI GGNNCC 3 cut(s) 353, 519, 624
BpuEI CTTGAG 1 cut(s) 343
BsaJI CCNNGG 1 cut(s) 521
Bsc4I CCNNNNNNNGG 3 cut(s) 94, 310, 514
BseDI CCNNGG 1 cut(s) 521
BseGI GGATG 1 cut(s) 79
BseLI CCNNNNNNNGG 3 cut(s) 94, 310, 514
BseMII CTCAG 3 cut(s) 29, 153, 218
BseRI GAGGAG 1 cut(s) 297
BseXI GCAGC 1 cut(s) 590
BshFI GGCC 2 cut(s) 529, 616
BshNI GGYRCC 1 cut(s) 517
BslFI GGGAC 1 cut(s) 111
BslI CCNNNNNNNGG 3 cut(s) 94, 310, 514
BsmAI GTCTC 2 cut(s) 18, 147
BsmFI GGGAC 1 cut(s) 111
BsnI GGCC 2 cut(s) 529, 616
Bsp143I GATC 2 cut(s) 364, 622
Bsp19I CCATGG 1 cut(s) 521
BspACI CCGC 2 cut(s) 355, 613
BspANI GGCC 2 cut(s) 529, 616
BspCNI CTCAG 3 cut(s) 28, 154, 219
BspLI GGNNCC 3 cut(s) 353, 519, 624
BspPI GGATC 3 cut(s) 359, 617, 630
BspT107I GGYRCC 1 cut(s) 517
BsrBI CCGCTC 1 cut(s) 357
BssECI CCNNGG 1 cut(s) 521
BssMI GATC 2 cut(s) 364, 622
BssSI CACGAG 2 cut(s) 563, 607
BssT1I CCWWGG 1 cut(s) 521
Bst2BI CACGAG 2 cut(s) 563, 607
Bst4CI ACNGT 4 cut(s) 81, 272, 488, 593
Bst6I CTCTTC 1 cut(s) 152
BstC8I GCNNGC 1 cut(s) 576
BstDEI CTNAG 3 cut(s) 15, 162, 227
BstDSI CCRYGG 1 cut(s) 521
BstEII GGTNACC 1 cut(s) 340
BstF5I GGATG 1 cut(s) 79
BstKTI GATC 2 cut(s) 367, 625
BstMAI GTCTC 2 cut(s) 18, 147
BstMBI GATC 2 cut(s) 364, 622
BstMWI GCNNNNNNNGC 1 cut(s) 526
BstNSI RCATGY 1 cut(s) 578
BstPI GGTNACC 1 cut(s) 340
BstV1I GCAGC 1 cut(s) 590
BstX2I RGATCY 1 cut(s) 622
BstYI RGATCY 1 cut(s) 622
BsuRI GGCC 2 cut(s) 529, 616
BtgI CCRYGG 1 cut(s) 521
BtsCI GGATG 1 cut(s) 79
Cac8I GCNNGC 1 cut(s) 576
CseI GACGC 1 cut(s) 212
Csp6I GTAC 1 cut(s) 553
CspCI CAANNNNNGTGG 2 cut(s) 108, 143
CviAII CATG 3 cut(s) 514, 522, 575
CviJI RGCY 9 cut(s) 5, 47, 169, 266, 354, 383, 529, 581, 616
CviKI_1 RGCY 9 cut(s) 5, 47, 169, 266, 354, 383, 529, 581, 616
CviQI GTAC 1 cut(s) 553
DdeI CTNAG 3 cut(s) 15, 162, 227
DpnI GATC 2 cut(s) 366, 624
DpnII GATC 2 cut(s) 364, 622
EaeI YGGCCR 1 cut(s) 527
Eam1104I CTCTTC 1 cut(s) 152
EarI CTCTTC 1 cut(s) 152
Eco130I CCWWGG 1 cut(s) 521
Eco57I CTGAAG 1 cut(s) 77
Eco91I GGTNACC 1 cut(s) 340
EcoO65I GGTNACC 1 cut(s) 340
EcoT14I CCWWGG 1 cut(s) 521
ErhI CCWWGG 1 cut(s) 521
FaeI CATG 3 cut(s) 517, 525, 578
FaqI GGGAC 1 cut(s) 111
FatI CATG 3 cut(s) 513, 521, 574
Fnu4HI GCNGC 3 cut(s) 355, 579, 614
FokI GGATG 1 cut(s) 86
Fsp4HI GCNGC 3 cut(s) 355, 579, 614
FspBI CTAG 1 cut(s) 644
GluI GCNGC 3 cut(s) 355, 579, 614
HaeIII GGCC 2 cut(s) 529, 616
HgaI GACGC 1 cut(s) 212
Hin1II CATG 3 cut(s) 517, 525, 578
HincII GTYRAC 3 cut(s) 37, 208, 495
HindII GTYRAC 3 cut(s) 37, 208, 495
HinfI GANTC 4 cut(s) 158, 187, 510, 568
HpaI GTTAAC 1 cut(s) 495
HphI GGTGA 1 cut(s) 334
Hpy166II GTNNAC 3 cut(s) 37, 208, 495
Hpy188I TCNGA 4 cut(s) 163, 228, 328, 509
Hpy188III TCNNGA 5 cut(s) 59, 71, 155, 311, 620
Hpy8I GTNNAC 3 cut(s) 37, 208, 495
HpyAV CCTTC 1 cut(s) 460
HpyCH4III ACNGT 4 cut(s) 81, 272, 488, 593
HpyCH4V TGCA 6 cut(s) 22, 444, 455, 574, 578, 641
HpyF10VI GCNNNNNNNGC 1 cut(s) 526
HpyF3I CTNAG 3 cut(s) 15, 162, 227
Hsp92II CATG 3 cut(s) 517, 525, 578
KspAI GTTAAC 1 cut(s) 495
Kzo9I GATC 2 cut(s) 364, 622
LmnI GCTCC 1 cut(s) 351
LpnPI CCDG 8 cut(s) 56, 80, 185, 209, 296, 381, 549, 605
Lsp1109I GCAGC 1 cut(s) 590
MaeI CTAG 1 cut(s) 644
MaeIII GTNAC 3 cut(s) 340, 415, 472
MalI GATC 2 cut(s) 366, 624
MbiI CCGCTC 1 cut(s) 357
MboI GATC 2 cut(s) 364, 622
MboII GAAGA 1 cut(s) 139
MflI RGATCY 1 cut(s) 622
MluCI AATT 4 cut(s) 121, 432, 546, 628
MlyI GAGTC 1 cut(s) 181
MnlI CCTC 8 cut(s) 55, 58, 159, 315, 318, 463, 508, 627
MseI TTAA 2 cut(s) 494, 588
MwoI GCNNNNNNNGC 1 cut(s) 526
NcoI CCATGG 1 cut(s) 521
NdeII GATC 2 cut(s) 364, 622
NlaIII CATG 3 cut(s) 517, 525, 578
NlaIV GGNNCC 3 cut(s) 353, 519, 624
NmuCI GTSAC 1 cut(s) 340
NspI RCATGY 1 cut(s) 578
PaeI GCATGC 1 cut(s) 578
PfeI GAWTC 3 cut(s) 158, 510, 568
PkrI GCNGC 3 cut(s) 356, 580, 615
PleI GAGTC 1 cut(s) 181
PpsI GAGTC 1 cut(s) 181
PspEI GGTNACC 1 cut(s) 340
PspN4I GGNNCC 3 cut(s) 353, 519, 624
PsuI RGATCY 1 cut(s) 622
RsaI GTAC 1 cut(s) 554
RsaNI GTAC 1 cut(s) 553
SaqAI TTAA 2 cut(s) 494, 588
SatI GCNGC 3 cut(s) 355, 579, 614
Sau3AI GATC 2 cut(s) 364, 622
SchI GAGTC 1 cut(s) 181
SetI ASST 4 cut(s) 385, 474, 500, 538
SmlI CTYRAG 1 cut(s) 358
SmoI CTYRAG 1 cut(s) 358
SpeI ACTAGT 1 cut(s) 643
SphI GCATGC 1 cut(s) 578
Sse9I AATT 4 cut(s) 121, 432, 546, 628
SsiI CCGC 2 cut(s) 355, 613
SspMI CTAG 1 cut(s) 644
StyI CCWWGG 1 cut(s) 521
TaaI ACNGT 4 cut(s) 81, 272, 488, 593
TaqI TCGA 1 cut(s) 387
TasI AATT 4 cut(s) 121, 432, 546, 628
TatI WGTACW 1 cut(s) 552
TauI GCSGC 2 cut(s) 357, 616
TfiI GAWTC 3 cut(s) 158, 510, 568
Tru1I TTAA 2 cut(s) 494, 588
Tru9I TTAA 2 cut(s) 494, 588
TseFI GTSAC 1 cut(s) 340
TseI GCWGC 1 cut(s) 578
Tsp45I GTSAC 1 cut(s) 340
TspDTI ATGAA 2 cut(s) 90, 502
XapI RAATTY 1 cut(s) 121
XceI RCATGY 1 cut(s) 578
XspI CTAG 1 cut(s) 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.