Rorug05G0571100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000270
Physical Location & Seq
Forward (+)
76406338 .. 76409487
3150 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0571100.1

Sequence Viewer

Length: 855 bp
ATGTCGTCGGAGCTTTCAACCATCAAAGCTTGCTTGCGAGGAGATGAGAGGCAACTCCCTGCAATGGTCGAAAGCGAGTTATCCTTTGCATTTTCCATTCTTTTCAAAAAGTTTGTTTGGAAGGCTGGCAAAGTTGGGACACAAGAAGCACCTACTCAATGTCCATCCATCAGTTTATTTCCAAAAAGGGAGTTCTACGACAACCAGATAGTAGATGGTCCAATTGTCATAGAAAAAAGCTATGAGAGGTGCTTCCTCAAGGGGAAAATGTACCAATCCTATTCCTTCATAAATGTAGCCAATGGAAAAGAAGAATTTGATCACAGATTTAGTTGGAAAAATATGGTGGAGAATTCATTGGAACAAAGAAGAAAGTTAGTATTGGGGTCATATCACCATACAAGGCTCAAGTTTATGCAATTCAAGATACTCAGAAAATATACTGAAACTTCTGATACTGGATTCTCCGTAAGTGTGCGATCTGTTGATGGGTTCCAAGGTGGTGAAGAAGATGTGATAATTATGTCTACTGTCCGATGTAATGGGAATGGGTCAGTTGGTTTCTTGTCGAACCAGCAAAGAGCAATTGTTGCCTTAACACATGCAAGGTATTGCCTTTGGATATTGGGGAATGCGTCAGCTTTGATTGCTAGTGACTCTGTTTGGAAGAAGCTTGTCCTTGATGCCAAGAAACGGAACTGTTTTTATAATGCTGATGAAGACAGCAACTTGGCTCAGGCTATTACAGCTGCCCTGCTAGAGCTTGACCAACTTCATTCTCTGCTTAATATTGACTCTCTGCTGTTCAAAAACGCTATATGGAAGGTTGCTTTGTCAAAGATCTTTGTCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

284

Amino Acids

32.24

Weight (kDa)

8.92

Isoelectric Point (pI)

38.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA_12 PF13087 54 - 212 8e-27 AAA domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 708
AccI GTMKAC 1 cut(s) 527
AcsI RAATTY 2 cut(s) 314, 352
AfaI GTAC 1 cut(s) 272
AfiI CCNNNNNNNGG 2 cut(s) 64, 693
AgsI TTSAA 4 cut(s) 18, 106, 424, 808
AluBI AGCT 7 cut(s) 13, 29, 240, 641, 673, 749, 763
AluI AGCT 7 cut(s) 13, 29, 240, 641, 673, 749, 763
ApeKI GCWGC 1 cut(s) 749
ApoI RAATTY 2 cut(s) 314, 352
AspS9I GGNCC 1 cut(s) 218
AsuHPI GGTGA 2 cut(s) 386, 515
AvaII GGWCC 1 cut(s) 218
BbsI GAAGAC 1 cut(s) 726
BbvI GCAGC 1 cut(s) 736
BccI CCATC 5 cut(s) 29, 172, 176, 209, 482
BclI TGATCA 1 cut(s) 319
BfaI CTAG 2 cut(s) 651, 758
BglII AGATCT 1 cut(s) 840
BisI GCNGC 1 cut(s) 750
BlsI GCNGC 1 cut(s) 751
Bme18I GGWCC 1 cut(s) 218
BmgT120I GGNCC 1 cut(s) 218
BmiI GGNNCC 1 cut(s) 494
BmsI GCATC 1 cut(s) 673
BpiI GAAGAC 1 cut(s) 726
Bpu10I CCTNAGC 1 cut(s) 735
BpuEI CTTGAG 2 cut(s) 242, 392
BsaJI CCNNGG 1 cut(s) 496
Bsc4I CCNNNNNNNGG 2 cut(s) 64, 693
Bse1I ACTGG 1 cut(s) 463
Bse3DI GCAATG 1 cut(s) 69
BseDI CCNNGG 1 cut(s) 496
BseGI GGATG 1 cut(s) 164
BseLI CCNNNNNNNGG 2 cut(s) 64, 693
BseMI GCAATG 1 cut(s) 69
BseMII CTCAG 2 cut(s) 445, 749
BseNI ACTGG 1 cut(s) 463
BseRI GAGGAG 1 cut(s) 54
BseXI GCAGC 1 cut(s) 736
BslFI GGGAC 1 cut(s) 151
BslI CCNNNNNNNGG 2 cut(s) 64, 693
BsmFI GGGAC 1 cut(s) 151
BsmI GAATGC 1 cut(s) 637
Bsp143I GATC 3 cut(s) 319, 479, 840
BspCNI CTCAG 2 cut(s) 444, 748
BspLI GGNNCC 1 cut(s) 494
BsrDI GCAATG 1 cut(s) 69
BsrI ACTGG 1 cut(s) 463
BssECI CCNNGG 1 cut(s) 496
BssMI GATC 3 cut(s) 319, 479, 840
BssT1I CCWWGG 1 cut(s) 496
Bst4CI ACNGT 2 cut(s) 532, 701
BstAPI GCANNNNNTGC 1 cut(s) 590
BstC8I GCNNGC 3 cut(s) 31, 35, 127
BstDEI CTNAG 2 cut(s) 431, 735
BstF5I GGATG 1 cut(s) 164
BstKTI GATC 3 cut(s) 322, 482, 843
BstMBI GATC 3 cut(s) 319, 479, 840
BstMWI GCNNNNNNNGC 3 cut(s) 590, 647, 746
BstNSI RCATGY 1 cut(s) 605
BstV1I GCAGC 1 cut(s) 736
BstV2I GAAGAC 1 cut(s) 726
BstX2I RGATCY 1 cut(s) 840
BstYI RGATCY 1 cut(s) 840
BtsCI GGATG 1 cut(s) 164
Cac8I GCNNGC 3 cut(s) 31, 35, 127
Cfr13I GGNCC 1 cut(s) 218
CseI GACGC 1 cut(s) 624
Csp6I GTAC 1 cut(s) 271
CviAII CATG 1 cut(s) 602
CviQI GTAC 1 cut(s) 271
DdeI CTNAG 2 cut(s) 431, 735
DpnI GATC 3 cut(s) 321, 481, 842
DpnII GATC 3 cut(s) 319, 479, 840
Eco130I CCWWGG 1 cut(s) 496
Eco47I GGWCC 1 cut(s) 218
EcoRI GAATTC 1 cut(s) 352
EcoT14I CCWWGG 1 cut(s) 496
ErhI CCWWGG 1 cut(s) 496
FaeI CATG 1 cut(s) 605
FaqI GGGAC 1 cut(s) 151
FatI CATG 1 cut(s) 601
FbaI TGATCA 1 cut(s) 319
FblI GTMKAC 1 cut(s) 527
Fnu4HI GCNGC 1 cut(s) 750
FokI GGATG 1 cut(s) 151
Fsp4HI GCNGC 1 cut(s) 750
FspBI CTAG 2 cut(s) 651, 758
GluI GCNGC 1 cut(s) 750
HgaI GACGC 1 cut(s) 624
Hin1II CATG 1 cut(s) 605
HindIII AAGCTT 2 cut(s) 27, 671
HinfI GANTC 3 cut(s) 462, 656, 794
HphI GGTGA 2 cut(s) 386, 515
Hpy166II GTNNAC 1 cut(s) 528
Hpy188I TCNGA 4 cut(s) 10, 434, 454, 536
Hpy188III TCNNGA 1 cut(s) 424
Hpy8I GTNNAC 1 cut(s) 528
Hpy99I CGWCG 1 cut(s) 10
HpyAV CCTTC 3 cut(s) 115, 295, 817
HpyCH4III ACNGT 2 cut(s) 532, 701
HpyCH4V TGCA 4 cut(s) 62, 89, 418, 605
HpyF10VI GCNNNNNNNGC 3 cut(s) 590, 647, 746
HpyF3I CTNAG 2 cut(s) 431, 735
Hsp92II CATG 1 cut(s) 605
Ksp22I TGATCA 1 cut(s) 319
Kzo9I GATC 3 cut(s) 319, 479, 840
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 7 cut(s) 72, 111, 218, 444, 587, 722, 767
Lsp1109I GCAGC 1 cut(s) 736
LweI GCATC 1 cut(s) 673
MaeI CTAG 2 cut(s) 651, 758
MaeIII GTNAC 1 cut(s) 653
MalI GATC 3 cut(s) 321, 481, 842
MboI GATC 3 cut(s) 319, 479, 840
MboII GAAGA 6 cut(s) 323, 381, 518, 521, 679, 731
MfeI CAATTG 2 cut(s) 222, 585
MflI RGATCY 1 cut(s) 840
MluCI AATT 6 cut(s) 222, 314, 352, 419, 519, 585
MlyI GAGTC 2 cut(s) 650, 788
MmeI TCCRAC 1 cut(s) 314
MnlI CCTC 4 cut(s) 32, 42, 240, 266
MseI TTAA 2 cut(s) 596, 786
MspA1I CMGCKG 1 cut(s) 749
MunI CAATTG 2 cut(s) 222, 585
Mva1269I GAATGC 1 cut(s) 637
MwoI GCNNNNNNNGC 3 cut(s) 590, 647, 746
NdeII GATC 3 cut(s) 319, 479, 840
NlaIII CATG 1 cut(s) 605
NlaIV GGNNCC 1 cut(s) 494
NmuCI GTSAC 1 cut(s) 653
NspI RCATGY 1 cut(s) 605
PctI GAATGC 1 cut(s) 637
PfeI GAWTC 1 cut(s) 462
PkrI GCNGC 1 cut(s) 751
PleI GAGTC 2 cut(s) 650, 788
PpsI GAGTC 2 cut(s) 650, 788
PsiI TTATAA 1 cut(s) 708
PspN4I GGNNCC 1 cut(s) 494
PspPI GGNCC 1 cut(s) 218
PsuI RGATCY 1 cut(s) 840
PvuII CAGCTG 1 cut(s) 749
RsaI GTAC 1 cut(s) 272
RsaNI GTAC 1 cut(s) 271
SaqAI TTAA 2 cut(s) 596, 786
SatI GCNGC 1 cut(s) 750
Sau3AI GATC 3 cut(s) 319, 479, 840
Sau96I GGNCC 1 cut(s) 218
SchI GAGTC 2 cut(s) 650, 788
SfaNI GCATC 1 cut(s) 673
SinI GGWCC 1 cut(s) 218
SmlI CTYRAG 2 cut(s) 257, 407
SmoI CTYRAG 2 cut(s) 257, 407
Sse9I AATT 6 cut(s) 222, 314, 352, 419, 519, 585
SspI AATATT 1 cut(s) 790
SspMI CTAG 2 cut(s) 651, 758
StyI CCWWGG 1 cut(s) 496
TaaI ACNGT 2 cut(s) 532, 701
TaqI TCGA 2 cut(s) 69, 569
TasI AATT 6 cut(s) 222, 314, 352, 419, 519, 585
TfiI GAWTC 1 cut(s) 462
Tru1I TTAA 2 cut(s) 596, 786
Tru9I TTAA 2 cut(s) 596, 786
TseFI GTSAC 1 cut(s) 653
TseI GCWGC 1 cut(s) 749
Tsp45I GTSAC 1 cut(s) 653
TspDTI ATGAA 4 cut(s) 277, 345, 732, 764
TspGWI ACGGA 2 cut(s) 457, 709
VpaK11BI GGWCC 1 cut(s) 218
XapI RAATTY 2 cut(s) 314, 352
XceI RCATGY 1 cut(s) 605
XcmI CCANNNNNNNNNTGG 1 cut(s) 212
XmiI GTMKAC 1 cut(s) 527
XspI CTAG 2 cut(s) 651, 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.