Rmu_sc0032173.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0032173.1
OG0000270
Physical Location & Seq
Reverse (-)
1 .. 1097
1097 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0032173.1_g000001.1.cds

Sequence Viewer

Length: 695 bp
atgcaaaagcctattctaacaactctagttctattcgatataatcaaaccagtatctctcatcataacgtcggatcatccgtttctattttcatgtgatccatattataagtactcagatgatgatcataatggagatgaagaacaagggactagtactagtaccagaacgaattctttcatctttaatgctgagtataagtggaaggttgtgcgactagttcccaattcatcagatccaaactttcatttcgagatcttcttttctgagacccgtcaatggagagagattgatgtagtatgccctcagcaattttattcatttgcgatttttgatgattacagtcgggttactgcaacagattacgtagcttacaatggaatgttatactggtggagcagtaatggccttatacttgagttggatatgcccaaattcaatactagtattgctaagtaccgtttcagtgaactgcctgagggttttaatagtctagcatcaggctcgctaggagtaagcggagggcgtctgcggttgagcagggaagaagaatttctccctcaagatcacgacgagtttctgcagccatttagagttagggagttgaaacaaattgtgaagggcagcgaaggaaaactcaaatggttagccgacagtgttcctctcgcttgtaaaaatatagatgtcagcgcacc
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

232

Amino Acids

26.76

Weight (kDa)

4.97

Isoelectric Point (pI)

43.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 108
AciI CCGC 2 cut(s) 519, 532
AclWI GGATC 3 cut(s) 81, 92, 230
AcsI RAATTY 3 cut(s) 172, 434, 551
AcyI GRCGYC 1 cut(s) 526
AfaI GTAC 4 cut(s) 113, 157, 163, 458
AfiI CCNNNNNNNGG 1 cut(s) 279
AgsI TTSAA 2 cut(s) 439, 607
AhlI ACTAGT 4 cut(s) 152, 158, 217, 443
AluBI AGCT 1 cut(s) 371
AluI AGCT 1 cut(s) 371
Alw26I GTCTC 1 cut(s) 263
AlwI GGATC 3 cut(s) 81, 92, 230
AoxI GGCC 1 cut(s) 406
ApeKI GCWGC 2 cut(s) 583, 624
ApoI RAATTY 3 cut(s) 172, 434, 551
Asp700I GAANNNNTTC 3 cut(s) 172, 176, 552
AspLEI GCGC 1 cut(s) 692
AxyI CCTNAGG 1 cut(s) 477
BbvCI CCTCAGC 1 cut(s) 306
BbvI GCAGC 2 cut(s) 595, 636
BcgI CGANNNNNNTGC 2 cut(s) 486, 520
BclI TGATCA 1 cut(s) 124
BcoDI GTCTC 1 cut(s) 263
BcuI ACTAGT 4 cut(s) 152, 158, 217, 443
BfaI CTAG 7 cut(s) 26, 153, 159, 218, 444, 494, 509
BfmI CTRYAG 1 cut(s) 581
BglII AGATCT 1 cut(s) 255
BisI GCNGC 2 cut(s) 584, 625
BlsI GCNGC 2 cut(s) 585, 626
BmcAI AGTACT 2 cut(s) 113, 157
BmsI GCATC 1 cut(s) 506
Bpu10I CCTNAGC 1 cut(s) 306
BpuEI CTTGAG 2 cut(s) 437, 546
BsaAI YACGTR 1 cut(s) 367
BsaBI GATNNNNATC 1 cut(s) 123
BsaHI GRCGYC 1 cut(s) 526
BsaI GGTCTC 1 cut(s) 263
Bsc4I CCNNNNNNNGG 1 cut(s) 279
Bse1I ACTGG 2 cut(s) 50, 395
Bse21I CCTNAGG 1 cut(s) 477
Bse8I GATNNNNATC 1 cut(s) 123
BseGI GGATG 1 cut(s) 76
BseJI GATNNNNATC 1 cut(s) 123
BseLI CCNNNNNNNGG 1 cut(s) 279
BseMII CTCAG 5 cut(s) 129, 183, 258, 320, 468
BseNI ACTGG 2 cut(s) 50, 395
BseXI GCAGC 2 cut(s) 595, 636
BshFI GGCC 1 cut(s) 408
BslFI GGGAC 1 cut(s) 163
BslI CCNNNNNNNGG 1 cut(s) 279
BsmAI GTCTC 1 cut(s) 263
BsmFI GGGAC 1 cut(s) 163
BsnI GGCC 1 cut(s) 408
Bso31I GGTCTC 1 cut(s) 263
Bsp143I GATC 6 cut(s) 73, 97, 124, 235, 255, 565
BspACI CCGC 2 cut(s) 519, 532
BspANI GGCC 1 cut(s) 408
BspCNI CTCAG 5 cut(s) 128, 184, 259, 319, 469
BspMAI CTGCAG 1 cut(s) 585
BspPI GGATC 3 cut(s) 81, 92, 230
BspTNI GGTCTC 1 cut(s) 263
BsrI ACTGG 2 cut(s) 50, 395
BssMI GATC 6 cut(s) 73, 97, 124, 235, 255, 565
BssNI GRCGYC 1 cut(s) 526
Bst4CI ACNGT 3 cut(s) 344, 461, 656
BstACI GRCGYC 1 cut(s) 526
BstBAI YACGTR 1 cut(s) 367
BstC8I GCNNGC 1 cut(s) 506
BstDEI CTNAG 6 cut(s) 115, 192, 267, 306, 453, 477
BstF5I GGATG 1 cut(s) 76
BstHHI GCGC 1 cut(s) 692
BstKTI GATC 6 cut(s) 76, 100, 127, 238, 258, 568
BstMAI GTCTC 1 cut(s) 263
BstMBI GATC 6 cut(s) 73, 97, 124, 235, 255, 565
BstMWI GCNNNNNNNGC 1 cut(s) 405
BstSFI CTRYAG 1 cut(s) 581
BstSNI TACGTA 1 cut(s) 367
BstV1I GCAGC 2 cut(s) 595, 636
BstX2I RGATCY 2 cut(s) 235, 255
BstYI RGATCY 2 cut(s) 235, 255
Bsu36I CCTNAGG 1 cut(s) 477
BsuRI GGCC 1 cut(s) 408
BtsCI GGATG 1 cut(s) 76
BtsIMutI CAGTG 2 cut(s) 472, 661
Cac8I GCNNGC 1 cut(s) 506
CfoI GCGC 1 cut(s) 692
CseI GACGC 1 cut(s) 515
Csp6I GTAC 4 cut(s) 112, 156, 162, 457
CviAII CATG 1 cut(s) 93
CviJI RGCY 6 cut(s) 10, 371, 408, 504, 586, 650
CviKI_1 RGCY 6 cut(s) 10, 371, 408, 504, 586, 650
CviQI GTAC 4 cut(s) 112, 156, 162, 457
DdeI CTNAG 6 cut(s) 115, 192, 267, 306, 453, 477
DpnI GATC 6 cut(s) 75, 99, 126, 237, 257, 567
DpnII GATC 6 cut(s) 73, 97, 124, 235, 255, 565
Eco105I TACGTA 1 cut(s) 367
Eco31I GGTCTC 1 cut(s) 263
Eco81I CCTNAGG 1 cut(s) 477
EcoRI GAATTC 1 cut(s) 172
FaeI CATG 1 cut(s) 96
FaqI GGGAC 1 cut(s) 163
FatI CATG 1 cut(s) 92
FbaI TGATCA 1 cut(s) 124
Fnu4HI GCNGC 2 cut(s) 584, 625
FokI GGATG 1 cut(s) 63
Fsp4HI GCNGC 2 cut(s) 584, 625
FspBI CTAG 7 cut(s) 26, 153, 159, 218, 444, 494, 509
GlaI GCGC 1 cut(s) 691
GluI GCNGC 2 cut(s) 584, 625
HaeIII GGCC 1 cut(s) 408
HgaI GACGC 1 cut(s) 515
HhaI GCGC 1 cut(s) 692
Hin1I GRCGYC 1 cut(s) 526
Hin1II CATG 1 cut(s) 96
Hin6I GCGC 1 cut(s) 690
HinP1I GCGC 1 cut(s) 690
Hpy166II GTNNAC 1 cut(s) 470
Hpy188I TCNGA 4 cut(s) 73, 118, 235, 268
Hpy188III TCNNGA 3 cut(s) 253, 563, 569
Hpy8I GTNNAC 1 cut(s) 470
Hpy99I CGWCG 2 cut(s) 73, 575
HpyAV CCTTC 3 cut(s) 199, 613, 623
HpyCH4III ACNGT 3 cut(s) 344, 461, 656
HpyCH4IV ACGT 2 cut(s) 68, 366
HpyCH4V TGCA 3 cut(s) 4, 356, 583
HpyF10VI GCNNNNNNNGC 1 cut(s) 405
HpyF3I CTNAG 6 cut(s) 115, 192, 267, 306, 453, 477
HpySE526I ACGT 2 cut(s) 68, 366
Hsp92I GRCGYC 1 cut(s) 526
Hsp92II CATG 1 cut(s) 96
HspAI GCGC 1 cut(s) 690
Ksp22I TGATCA 1 cut(s) 124
Kzo9I GATC 6 cut(s) 73, 97, 124, 235, 255, 565
LmnI GCTCC 1 cut(s) 396
LpnPI CCDG 6 cut(s) 63, 178, 376, 486, 489, 526
Lsp1109I GCAGC 2 cut(s) 595, 636
LweI GCATC 1 cut(s) 506
MaeI CTAG 7 cut(s) 26, 153, 159, 218, 444, 494, 509
MaeII ACGT 2 cut(s) 68, 366
MaeIII GTNAC 1 cut(s) 349
MalI GATC 6 cut(s) 75, 99, 126, 237, 257, 567
MboI GATC 6 cut(s) 73, 97, 124, 235, 255, 565
MboII GAAGA 4 cut(s) 152, 250, 557, 560
MflI RGATCY 2 cut(s) 235, 255
MluCI AATT 6 cut(s) 172, 226, 311, 434, 551, 612
MmeI TCCRAC 2 cut(s) 51, 402
MnlI CCTC 5 cut(s) 315, 472, 515, 570, 672
MroXI GAANNNNTTC 3 cut(s) 172, 176, 552
MseI TTAA 2 cut(s) 186, 486
MwoI GCNNNNNNNGC 1 cut(s) 405
NdeII GATC 6 cut(s) 73, 97, 124, 235, 255, 565
NlaIII CATG 1 cut(s) 96
PcsI WCGNNNNNNNCGW 1 cut(s) 77
PdmI GAANNNNTTC 3 cut(s) 172, 176, 552
PkrI GCNGC 2 cut(s) 585, 626
Ppu21I YACGTR 1 cut(s) 367
PsiI TTATAA 1 cut(s) 108
PstI CTGCAG 1 cut(s) 585
PsuI RGATCY 2 cut(s) 235, 255
RsaI GTAC 4 cut(s) 113, 157, 163, 458
RsaNI GTAC 4 cut(s) 112, 156, 162, 457
SaqAI TTAA 2 cut(s) 186, 486
SatI GCNGC 2 cut(s) 584, 625
Sau3AI GATC 6 cut(s) 73, 97, 124, 235, 255, 565
ScaI AGTACT 2 cut(s) 113, 157
SetI ASST 4 cut(s) 71, 210, 369, 373
SfaNI GCATC 1 cut(s) 506
SfcI CTRYAG 1 cut(s) 581
SmlI CTYRAG 2 cut(s) 416, 561
SmoI CTYRAG 2 cut(s) 416, 561
SnaBI TACGTA 1 cut(s) 367
SpeI ACTAGT 4 cut(s) 152, 158, 217, 443
Sse9I AATT 6 cut(s) 172, 226, 311, 434, 551, 612
SsiI CCGC 2 cut(s) 519, 532
SspMI CTAG 7 cut(s) 26, 153, 159, 218, 444, 494, 509
TaaI ACNGT 3 cut(s) 344, 461, 656
TaiI ACGT 2 cut(s) 71, 369
TaqI TCGA 2 cut(s) 36, 252
TasI AATT 6 cut(s) 172, 226, 311, 434, 551, 612
TatI WGTACW 2 cut(s) 111, 155
Tru1I TTAA 2 cut(s) 186, 486
Tru9I TTAA 2 cut(s) 186, 486
TscAI CASTG 2 cut(s) 472, 661
TseI GCWGC 2 cut(s) 583, 624
TspDTI ATGAA 6 cut(s) 81, 153, 169, 219, 236, 309
TspGWI ACGGA 1 cut(s) 69
TspRI CASTG 2 cut(s) 472, 661
XapI RAATTY 3 cut(s) 172, 434, 551
XmnI GAANNNNTTC 3 cut(s) 172, 176, 552
XspI CTAG 7 cut(s) 26, 153, 159, 218, 444, 494, 509
ZrmI AGTACT 2 cut(s) 113, 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.