RLG00000029780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000270
Physical Location & Seq
Forward (+)
48934199 .. 48935508
1310 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029780

Sequence Viewer

Length: 1116 bp
ATGTTACAAAGATTGAAATCATCACCGGGAGAAGAAGAAGGTCGATCATTAGAGTCAGAGTCATTCAGAACTAAGATTGCTGATATCCCGGAGGATTTATTGGTCGAAATTTTGTGTCGGCTTCCCTGCAATAAACTCATATTCCAATGCAAGCTTGTGTCCAAGCCTTGGTACAATCTCATATCTGCTCCTTACTTTGTTGGCCGCTATCTATGCCTCCAACGTCAAATGCAAAAGCCTATTCTAACAACTCTAGTTCTATTCGATATAATCAAACCAGTAGAATCCCTCATCATAACGTCGGATCATCCGGTTTTCAGAACAGCAACAAGCAATTTCACTCTTAATTTCCTCCCATGTTATAACCAAGCCAAAGAAATAGAAGAACTAGCCAAACAATTGCCCTATTTGAGGGACATGTACAAACCAGATGATGATCATAATGGAGATCAAGAACAAGTGACTAGTACTAATACTAGAACGAATTCTTTCATCTTTAATGCTGAATATAAGTGGAAGGTTGTGCGACTAGTTCCGAATTCATCAAATCCAAACTTTCATTTCGAGATCGTCTTTTCTGAGACCCGTCAATGGAGAGAGATAGATGTAGTATGCCCTCGGCCATTTTATTCATTTGCGATTTTTGATGATAACAATCGGATTACTGCAACAGATTACGTAGCTTACAATGGAATGTTGTACAAGCGGAGCAGAAATGGCCTTATACTTGAGTTGGATACGCCCAAATTCAATACTAGTATTGCTAAGTACCGTTTCATTGAACCGCCTAAGGGTTTTAATAGTCCACCAGCAAGAGGCACGCTGGGAGTAAGCGGAGGGCGTCTGCGGTTGAGCAAGGAAGGAGGAGACTTTCTCCCTCAAGATCACGACGAGTTTCTGCAGCCATTTAGAGTTATGGAGTTGAAACAAGTTGTGAAGGGCAGCGAAGACAAACTCAAATGGTTAGCCGACAGTGTTCCTCTAGCTTGTAAAAATATTGATGTCAGCGCACCGTACATATTTAAGATGCTAGCTTTCCACCCAAACAATGAGGATGTCGGGTATTTGACTCATTACCATAAAATTATCACATGCAACCTTCGTGGAGGAACGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

372

Amino Acids

42.8

Weight (kDa)

8.02

Isoelectric Point (pI)

46.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 27 - 66 3.3e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 363
AccB7I CCANNNNNTGG 1 cut(s) 168
AciI CCGC 5 cut(s) 205, 706, 785, 834, 847
AclWI GGATC 1 cut(s) 312
AcoI YGGCCR 2 cut(s) 202, 620
AcsI RAATTY 4 cut(s) 108, 484, 538, 746
AcyI GRCGYC 1 cut(s) 841
AfaI GTAC 6 cut(s) 173, 422, 469, 701, 770, 1016
AfiI CCNNNNNNNGG 5 cut(s) 168, 411, 591, 791, 815
AflIII ACRYGT 1 cut(s) 417
AgsI TTSAA 4 cut(s) 16, 751, 782, 925
AhlI ACTAGT 3 cut(s) 464, 529, 755
AluBI AGCT 4 cut(s) 154, 683, 986, 1034
AluI AGCT 4 cut(s) 154, 683, 986, 1034
Alw26I GTCTC 2 cut(s) 575, 861
AlwI GGATC 1 cut(s) 312
AoxI GGCC 3 cut(s) 202, 620, 718
ApeKI GCWGC 2 cut(s) 901, 942
ApoI RAATTY 4 cut(s) 108, 484, 538, 746
Asp700I GAANNNNTTC 2 cut(s) 484, 488
AspLEI GCGC 1 cut(s) 1010
AsuC2I CCSGG 2 cut(s) 27, 89
AsuHPI GGTGA 1 cut(s) 15
AsuNHI GCTAGC 1 cut(s) 1030
AxyI CCTNAGG 1 cut(s) 789
BbsI GAAGAC 1 cut(s) 954
BbvI GCAGC 2 cut(s) 913, 954
BciVI GTATCC 1 cut(s) 730
BclI TGATCA 1 cut(s) 436
BcnI CCSGG 2 cut(s) 27, 89
BcoDI GTCTC 2 cut(s) 575, 861
BcuI ACTAGT 3 cut(s) 464, 529, 755
BfaI CTAG 8 cut(s) 254, 389, 465, 477, 530, 756, 983, 1031
BfmI CTRYAG 1 cut(s) 899
BfuI GTATCC 1 cut(s) 730
BisI GCNGC 3 cut(s) 205, 902, 943
BlsI GCNGC 3 cut(s) 206, 903, 944
BmcAI AGTACT 1 cut(s) 469
Bme1390I CCNGG 2 cut(s) 27, 89
BmrFI CCNGG 2 cut(s) 27, 89
BmsI GCATC 1 cut(s) 1017
BmtI GCTAGC 1 cut(s) 1034
BpiI GAAGAC 1 cut(s) 954
BplI GAGNNNNNCTC 2 cut(s) 858, 890
BpuEI CTTGAG 2 cut(s) 749, 864
BpuMI CCSGG 2 cut(s) 27, 89
BsaAI YACGTR 1 cut(s) 679
BsaBI GATNNNNATC 3 cut(s) 16, 435, 654
BsaHI GRCGYC 1 cut(s) 841
BsaI GGTCTC 1 cut(s) 575
BsaJI CCNNGG 2 cut(s) 167, 617
BsaWI WCCGGW 1 cut(s) 310
Bsc4I CCNNNNNNNGG 5 cut(s) 168, 411, 591, 791, 815
Bse1I ACTGG 1 cut(s) 278
Bse21I CCTNAGG 1 cut(s) 789
Bse8I GATNNNNATC 3 cut(s) 16, 435, 654
BseDI CCNNGG 2 cut(s) 167, 617
BseGI GGATG 2 cut(s) 307, 1060
BseJI GATNNNNATC 3 cut(s) 16, 435, 654
BseLI CCNNNNNNNGG 5 cut(s) 168, 411, 591, 791, 815
BseMII CTCAG 1 cut(s) 570
BseNI ACTGG 1 cut(s) 278
BseRI GAGGAG 1 cut(s) 879
BseXI GCAGC 2 cut(s) 913, 954
BseYI CCCAGC 1 cut(s) 823
BshFI GGCC 3 cut(s) 204, 622, 720
BsiSI CCGG 3 cut(s) 26, 89, 311
BslFI GGGAC 1 cut(s) 428
BslI CCNNNNNNNGG 5 cut(s) 168, 411, 591, 791, 815
BsmAI GTCTC 2 cut(s) 575, 861
BsmFI GGGAC 1 cut(s) 428
BsnI GGCC 3 cut(s) 204, 622, 720
Bso31I GGTCTC 1 cut(s) 575
Bsp1407I TGTACA 2 cut(s) 420, 699
Bsp143I GATC 6 cut(s) 44, 304, 436, 448, 567, 883
BspACI CCGC 5 cut(s) 205, 706, 785, 834, 847
BspANI GGCC 3 cut(s) 204, 622, 720
BspCNI CTCAG 1 cut(s) 571
BspMAI CTGCAG 1 cut(s) 903
BspOI GCTAGC 1 cut(s) 1034
BspPI GGATC 1 cut(s) 312
BspTNI GGTCTC 1 cut(s) 575
BsrGI TGTACA 2 cut(s) 420, 699
BsrI ACTGG 1 cut(s) 278
BssECI CCNNGG 2 cut(s) 167, 617
BssMI GATC 6 cut(s) 44, 304, 436, 448, 567, 883
BssNI GRCGYC 1 cut(s) 841
BssT1I CCWWGG 1 cut(s) 167
Bst4CI ACNGT 3 cut(s) 773, 974, 1014
BstACI GRCGYC 1 cut(s) 841
BstAUI TGTACA 2 cut(s) 420, 699
BstBAI YACGTR 1 cut(s) 679
BstC8I GCNNGC 3 cut(s) 152, 821, 1032
BstDEI CTNAG 4 cut(s) 72, 579, 765, 789
BstENI CCTNNNNNAGG 1 cut(s) 409
BstF5I GGATG 2 cut(s) 307, 1060
BstHHI GCGC 1 cut(s) 1010
BstKTI GATC 6 cut(s) 47, 307, 439, 451, 570, 886
BstMAI GTCTC 2 cut(s) 575, 861
BstMBI GATC 6 cut(s) 44, 304, 436, 448, 567, 883
BstMWI GCNNNNNNNGC 2 cut(s) 213, 717
BstNSI RCATGY 2 cut(s) 421, 1095
BstSCI CCNGG 2 cut(s) 25, 87
BstSFI CTRYAG 1 cut(s) 899
BstSNI TACGTA 1 cut(s) 679
BstV1I GCAGC 2 cut(s) 913, 954
BstV2I GAAGAC 1 cut(s) 954
Bsu36I CCTNAGG 1 cut(s) 789
BsuI GTATCC 1 cut(s) 730
BsuRI GGCC 3 cut(s) 204, 622, 720
BtsCI GGATG 2 cut(s) 307, 1060
BtsIMutI CAGTG 1 cut(s) 979
Cac8I GCNNGC 3 cut(s) 152, 821, 1032
CfoI GCGC 1 cut(s) 1010
CseI GACGC 1 cut(s) 830
Csp6I GTAC 6 cut(s) 172, 421, 468, 700, 769, 1015
CspCI CAANNNNNGTGG 1 cut(s) 1084
CviAII CATG 3 cut(s) 357, 418, 1092
CviQI GTAC 6 cut(s) 172, 421, 468, 700, 769, 1015
DdeI CTNAG 4 cut(s) 72, 579, 765, 789
DpnI GATC 6 cut(s) 46, 306, 438, 450, 569, 885
DpnII GATC 6 cut(s) 44, 304, 436, 448, 567, 883
EaeI YGGCCR 2 cut(s) 202, 620
Eco105I TACGTA 1 cut(s) 679
Eco130I CCWWGG 1 cut(s) 167
Eco31I GGTCTC 1 cut(s) 575
Eco32I GATATC 1 cut(s) 85
Eco81I CCTNAGG 1 cut(s) 789
EcoNI CCTNNNNNAGG 1 cut(s) 409
EcoRI GAATTC 2 cut(s) 484, 538
EcoRV GATATC 1 cut(s) 85
EcoT14I CCWWGG 1 cut(s) 167
ErhI CCWWGG 1 cut(s) 167
FaeI CATG 3 cut(s) 360, 421, 1095
FaqI GGGAC 1 cut(s) 428
FatI CATG 3 cut(s) 356, 417, 1091
FbaI TGATCA 1 cut(s) 436
Fnu4HI GCNGC 3 cut(s) 205, 902, 943
FokI GGATG 2 cut(s) 294, 1067
Fsp4HI GCNGC 3 cut(s) 205, 902, 943
FspBI CTAG 8 cut(s) 254, 389, 465, 477, 530, 756, 983, 1031
GlaI GCGC 1 cut(s) 1009
GluI GCNGC 3 cut(s) 205, 902, 943
GsaI CCCAGC 1 cut(s) 827
HaeIII GGCC 3 cut(s) 204, 622, 720
HapII CCGG 3 cut(s) 26, 89, 311
HgaI GACGC 1 cut(s) 830
HhaI GCGC 1 cut(s) 1010
Hin1I GRCGYC 1 cut(s) 841
Hin1II CATG 3 cut(s) 360, 421, 1095
Hin6I GCGC 1 cut(s) 1008
HinP1I GCGC 1 cut(s) 1008
HindIII AAGCTT 1 cut(s) 152
HinfI GANTC 4 cut(s) 53, 59, 284, 1069
HpaII CCGG 3 cut(s) 26, 89, 311
HphI GGTGA 1 cut(s) 15
Hpy166II GTNNAC 1 cut(s) 806
Hpy188I TCNGA 7 cut(s) 58, 68, 304, 320, 537, 580, 660
Hpy188III TCNNGA 4 cut(s) 452, 565, 881, 887
Hpy8I GTNNAC 1 cut(s) 806
Hpy99I CGWCG 2 cut(s) 304, 893
HpyAV CCTTC 5 cut(s) 32, 511, 854, 931, 1109
HpyCH4III ACNGT 3 cut(s) 773, 974, 1014
HpyCH4IV ACGT 4 cut(s) 223, 299, 678, 1112
HpyCH4V TGCA 6 cut(s) 129, 150, 232, 668, 901, 1095
HpyF10VI GCNNNNNNNGC 2 cut(s) 213, 717
HpyF3I CTNAG 4 cut(s) 72, 579, 765, 789
HpySE526I ACGT 4 cut(s) 223, 299, 678, 1112
Hsp92I GRCGYC 1 cut(s) 841
Hsp92II CATG 3 cut(s) 360, 421, 1095
HspAI GCGC 1 cut(s) 1008
Ksp22I TGATCA 1 cut(s) 436
Kzo9I GATC 6 cut(s) 44, 304, 436, 448, 567, 883
LmnI GCTCC 2 cut(s) 193, 708
LpnPI CCDG 8 cut(s) 39, 102, 139, 291, 324, 441, 809, 822
Lsp1109I GCAGC 2 cut(s) 913, 954
LweI GCATC 1 cut(s) 1017
MaeI CTAG 8 cut(s) 254, 389, 465, 477, 530, 756, 983, 1031
MaeII ACGT 4 cut(s) 223, 299, 678, 1112
MaeIII GTNAC 2 cut(s) 3, 460
MalI GATC 6 cut(s) 46, 306, 438, 450, 569, 885
MboI GATC 6 cut(s) 44, 304, 436, 448, 567, 883
MboII GAAGA 4 cut(s) 44, 47, 395, 959
MfeI CAATTG 1 cut(s) 398
MluCI AATT 8 cut(s) 108, 334, 346, 398, 484, 538, 746, 1083
MlyI GAGTC 3 cut(s) 62, 68, 1063
MmeI TCCRAC 3 cut(s) 244, 282, 714
MroXI GAANNNNTTC 2 cut(s) 484, 488
MseI TTAA 4 cut(s) 345, 498, 798, 1023
MspI CCGG 3 cut(s) 26, 89, 311
MspR9I CCNGG 2 cut(s) 27, 89
MunI CAATTG 1 cut(s) 398
MwoI GCNNNNNNNGC 2 cut(s) 213, 717
NciI CCSGG 2 cut(s) 27, 89
NdeII GATC 6 cut(s) 44, 304, 436, 448, 567, 883
NheI GCTAGC 1 cut(s) 1030
NlaIII CATG 3 cut(s) 360, 421, 1095
NmeAIII GCCGAG 1 cut(s) 598
NmuCI GTSAC 1 cut(s) 460
NspI RCATGY 2 cut(s) 421, 1095
PciI ACATGT 1 cut(s) 417
PdmI GAANNNNTTC 2 cut(s) 484, 488
PfeI GAWTC 1 cut(s) 284
PflMI CCANNNNNTGG 1 cut(s) 168
PfoI TCCNGGA 1 cut(s) 87
PkrI GCNGC 3 cut(s) 206, 903, 944
PleI GAGTC 3 cut(s) 61, 67, 1063
PpsI GAGTC 3 cut(s) 61, 67, 1063
Ppu21I YACGTR 1 cut(s) 679
PscI ACATGT 1 cut(s) 417
PsiI TTATAA 1 cut(s) 363
PspFI CCCAGC 1 cut(s) 823
PstI CTGCAG 1 cut(s) 903
RsaI GTAC 6 cut(s) 173, 422, 469, 701, 770, 1016
RsaNI GTAC 6 cut(s) 172, 421, 468, 700, 769, 1015
SaqAI TTAA 4 cut(s) 345, 498, 798, 1023
SatI GCNGC 3 cut(s) 205, 902, 943
Sau3AI GATC 6 cut(s) 44, 304, 436, 448, 567, 883
ScaI AGTACT 1 cut(s) 469
SchI GAGTC 3 cut(s) 62, 68, 1063
ScrFI CCNGG 2 cut(s) 27, 89
SfaNI GCATC 1 cut(s) 1017
SfcI CTRYAG 1 cut(s) 899
SmlI CTYRAG 2 cut(s) 728, 879
SmoI CTYRAG 2 cut(s) 728, 879
SnaBI TACGTA 1 cut(s) 679
SpeI ACTAGT 3 cut(s) 464, 529, 755
Sse9I AATT 8 cut(s) 108, 334, 346, 398, 484, 538, 746, 1083
SsiI CCGC 5 cut(s) 205, 706, 785, 834, 847
SspI AATATT 1 cut(s) 997
SspMI CTAG 8 cut(s) 254, 389, 465, 477, 530, 756, 983, 1031
StyD4I CCNGG 2 cut(s) 25, 87
StyI CCWWGG 1 cut(s) 167
TaaI ACNGT 3 cut(s) 773, 974, 1014
TaiI ACGT 4 cut(s) 226, 302, 681, 1115
TaqI TCGA 4 cut(s) 43, 105, 264, 564
TasI AATT 8 cut(s) 108, 334, 346, 398, 484, 538, 746, 1083
TatI WGTACW 3 cut(s) 420, 467, 699
TauI GCSGC 1 cut(s) 207
TfiI GAWTC 1 cut(s) 284
Tru1I TTAA 4 cut(s) 345, 498, 798, 1023
Tru9I TTAA 4 cut(s) 345, 498, 798, 1023
TscAI CASTG 1 cut(s) 979
TseFI GTSAC 1 cut(s) 460
TseI GCWGC 2 cut(s) 901, 942
Tsp45I GTSAC 1 cut(s) 460
TspDTI ATGAA 5 cut(s) 481, 531, 548, 621, 766
TspRI CASTG 1 cut(s) 979
Van91I CCANNNNNTGG 1 cut(s) 168
XagI CCTNNNNNAGG 1 cut(s) 409
XapI RAATTY 4 cut(s) 108, 484, 538, 746
XceI RCATGY 2 cut(s) 421, 1095
XmnI GAANNNNTTC 2 cut(s) 484, 488
XspI CTAG 8 cut(s) 254, 389, 465, 477, 530, 756, 983, 1031
ZrmI AGTACT 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.