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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 393 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 468 |
| AccI | GTMKAC | 1 cut(s) | 73 |
| AciI | CCGC | 3 cut(s) | 160, 934, 1397 |
| AclWI | GGATC | 4 cut(s) | 137, 536, 815, 828 |
| AcsI | RAATTY | 1 cut(s) | 1221 |
| AcvI | CACGTG | 1 cut(s) | 1182 |
| AfaI | GTAC | 1 cut(s) | 1136 |
| AfeI | AGCGCT | 1 cut(s) | 586 |
| AfiI | CCNNNNNNNGG | 4 cut(s) | 55, 468, 612, 1121 |
| AflII | CTTAAG | 1 cut(s) | 1288 |
| AgsI | TTSAA | 5 cut(s) | 341, 829, 1097, 1309, 1322 |
| AhlI | ACTAGT | 1 cut(s) | 572 |
| AjnI | CCWGG | 2 cut(s) | 1240, 1336 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 769, 801 |
| AluBI | AGCT | 3 cut(s) | 373, 781, 1214 |
| AluI | AGCT | 3 cut(s) | 373, 781, 1214 |
| Alw21I | GWGCWC | 1 cut(s) | 413 |
| Alw26I | GTCTC | 2 cut(s) | 677, 1202 |
| AlwI | GGATC | 4 cut(s) | 137, 536, 815, 828 |
| Aor51HI | AGCGCT | 1 cut(s) | 586 |
| AoxI | GGCC | 3 cut(s) | 343, 1254, 1334 |
| ApaI | GGGCCC | 1 cut(s) | 1258 |
| ApoI | RAATTY | 1 cut(s) | 1221 |
| AseI | ATTAAT | 1 cut(s) | 33 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 471 |
| AspLEI | GCGC | 2 cut(s) | 129, 587 |
| AspS9I | GGNCC | 3 cut(s) | 1254, 1255, 1334 |
| AsuHPI | GGTGA | 2 cut(s) | 253, 701 |
| AsuII | TTCGAA | 1 cut(s) | 1448 |
| BaeGI | GKGCMC | 2 cut(s) | 944, 1258 |
| BamHI | GGATCC | 1 cut(s) | 820 |
| BanII | GRGCYC | 1 cut(s) | 1258 |
| BauI | CACGAG | 1 cut(s) | 110 |
| BbrPI | CACGTG | 1 cut(s) | 1182 |
| BbsI | GAAGAC | 2 cut(s) | 470, 570 |
| Bbv12I | GWGCWC | 1 cut(s) | 413 |
| BccI | CCATC | 5 cut(s) | 25, 715, 1004, 1054, 1355 |
| BciT130I | CCWGG | 2 cut(s) | 1242, 1338 |
| BciVI | GTATCC | 2 cut(s) | 714, 1238 |
| BclI | TGATCA | 1 cut(s) | 181 |
| BcoDI | GTCTC | 2 cut(s) | 677, 1202 |
| BcuI | ACTAGT | 1 cut(s) | 572 |
| BfaI | CTAG | 3 cut(s) | 420, 573, 1477 |
| BfmI | CTRYAG | 1 cut(s) | 229 |
| BfoI | RGCGCY | 1 cut(s) | 588 |
| BfrI | CTTAAG | 1 cut(s) | 1288 |
| BfuI | GTATCC | 2 cut(s) | 714, 1238 |
| Bme1390I | CCNGG | 2 cut(s) | 1242, 1338 |
| BmgT120I | GGNCC | 3 cut(s) | 1254, 1255, 1334 |
| BmiI | GGNNCC | 3 cut(s) | 822, 1256, 1257 |
| BmrFI | CCNGG | 2 cut(s) | 1242, 1338 |
| BmsI | GCATC | 4 cut(s) | 92, 180, 862, 877 |
| BoxI | GACNNNNGTC | 1 cut(s) | 254 |
| BpiI | GAAGAC | 2 cut(s) | 470, 570 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1260 |
| Bpu14I | TTCGAA | 1 cut(s) | 1448 |
| BsaAI | YACGTR | 1 cut(s) | 1182 |
| BsaJI | CCNNGG | 3 cut(s) | 462, 799, 1337 |
| Bsc4I | CCNNNNNNNGG | 4 cut(s) | 55, 468, 612, 1121 |
| Bse1I | ACTGG | 1 cut(s) | 691 |
| Bse3DI | GCAATG | 2 cut(s) | 778, 1192 |
| BseBI | CCWGG | 2 cut(s) | 1242, 1338 |
| BseDI | CCNNGG | 3 cut(s) | 462, 799, 1337 |
| BseGI | GGATG | 4 cut(s) | 171, 269, 942, 1015 |
| BseLI | CCNNNNNNNGG | 4 cut(s) | 55, 468, 612, 1121 |
| BseMI | GCAATG | 2 cut(s) | 778, 1192 |
| BseMII | CTCAG | 1 cut(s) | 1251 |
| BseNI | ACTGG | 1 cut(s) | 691 |
| BseRI | GAGGAG | 5 cut(s) | 125, 270, 273, 276, 279 |
| BseSI | GKGCMC | 2 cut(s) | 944, 1258 |
| BsgI | GTGCAG | 1 cut(s) | 637 |
| BshFI | GGCC | 3 cut(s) | 345, 1256, 1336 |
| BsiHKAI | GWGCWC | 1 cut(s) | 413 |
| BslFI | GGGAC | 1 cut(s) | 400 |
| BslI | CCNNNNNNNGG | 4 cut(s) | 55, 468, 612, 1121 |
| BsmAI | GTCTC | 2 cut(s) | 677, 1202 |
| BsmFI | GGGAC | 1 cut(s) | 400 |
| BsnI | GGCC | 3 cut(s) | 345, 1256, 1336 |
| Bsp119I | TTCGAA | 1 cut(s) | 1448 |
| Bsp120I | GGGCCC | 1 cut(s) | 1254 |
| Bsp1286I | GDGCHC | 3 cut(s) | 413, 944, 1258 |
| Bsp143I | GATC | 4 cut(s) | 142, 181, 541, 820 |
| BspACI | CCGC | 3 cut(s) | 160, 934, 1397 |
| BspANI | GGCC | 3 cut(s) | 345, 1256, 1336 |
| BspCNI | CTCAG | 1 cut(s) | 1252 |
| BspLI | GGNNCC | 3 cut(s) | 822, 1256, 1257 |
| BspPI | GGATC | 4 cut(s) | 137, 536, 815, 828 |
| BspT104I | TTCGAA | 1 cut(s) | 1448 |
| BspTI | CTTAAG | 1 cut(s) | 1288 |
| BsrDI | GCAATG | 2 cut(s) | 778, 1192 |
| BsrI | ACTGG | 1 cut(s) | 691 |
| BssECI | CCNNGG | 3 cut(s) | 462, 799, 1337 |
| BssMI | GATC | 4 cut(s) | 142, 181, 541, 820 |
| BssSI | CACGAG | 1 cut(s) | 110 |
| BssT1I | CCWWGG | 1 cut(s) | 462 |
| Bst2BI | CACGAG | 1 cut(s) | 110 |
| Bst2UI | CCWGG | 2 cut(s) | 1242, 1338 |
| Bst4CI | ACNGT | 1 cut(s) | 1433 |
| Bst6I | CTCTTC | 1 cut(s) | 1317 |
| BstAFI | CTTAAG | 1 cut(s) | 1288 |
| BstBAI | YACGTR | 1 cut(s) | 1182 |
| BstBI | TTCGAA | 1 cut(s) | 1448 |
| BstC8I | GCNNGC | 5 cut(s) | 304, 413, 769, 841, 1395 |
| BstDEI | CTNAG | 3 cut(s) | 117, 714, 1260 |
| BstF5I | GGATG | 4 cut(s) | 171, 269, 942, 1015 |
| BstH2I | RGCGCY | 1 cut(s) | 588 |
| BstHHI | GCGC | 2 cut(s) | 129, 587 |
| BstKTI | GATC | 4 cut(s) | 145, 184, 544, 823 |
| BstMAI | GTCTC | 2 cut(s) | 677, 1202 |
| BstMBI | GATC | 4 cut(s) | 142, 181, 541, 820 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 168, 312, 524, 768, 787 |
| BstNI | CCWGG | 2 cut(s) | 1242, 1338 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 254 |
| BstSCI | CCNGG | 2 cut(s) | 1240, 1336 |
| BstSFI | CTRYAG | 1 cut(s) | 229 |
| BstSLI | GKGCMC | 2 cut(s) | 944, 1258 |
| BstV2I | GAAGAC | 2 cut(s) | 470, 570 |
| BstX2I | RGATCY | 1 cut(s) | 820 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1010, 1361 |
| BstYI | RGATCY | 1 cut(s) | 820 |
| BsuI | GTATCC | 2 cut(s) | 714, 1238 |
| BsuRI | GGCC | 3 cut(s) | 345, 1256, 1336 |
| BtgZI | GCGATG | 1 cut(s) | 858 |
| BtsCI | GGATG | 4 cut(s) | 171, 269, 942, 1015 |
| BtsIMutI | CAGTG | 1 cut(s) | 1438 |
| Cac8I | GCNNGC | 5 cut(s) | 304, 413, 769, 841, 1395 |
| CfoI | GCGC | 2 cut(s) | 129, 587 |
| Cfr13I | GGNCC | 3 cut(s) | 1254, 1255, 1334 |
| Csp6I | GTAC | 1 cut(s) | 1135 |
| CviAII | CATG | 4 cut(s) | 179, 265, 347, 1121 |
| CviQI | GTAC | 1 cut(s) | 1135 |
| DdeI | CTNAG | 3 cut(s) | 117, 714, 1260 |
| DpnI | GATC | 4 cut(s) | 144, 183, 543, 822 |
| DpnII | GATC | 4 cut(s) | 142, 181, 541, 820 |
| Eam1104I | CTCTTC | 1 cut(s) | 1317 |
| EarI | CTCTTC | 1 cut(s) | 1317 |
| Eco130I | CCWWGG | 1 cut(s) | 462 |
| Eco24I | GRGCYC | 1 cut(s) | 1258 |
| Eco47III | AGCGCT | 1 cut(s) | 586 |
| Eco72I | CACGTG | 1 cut(s) | 1182 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1255, 1334 |
| EcoRII | CCWGG | 2 cut(s) | 1240, 1336 |
| EcoT14I | CCWWGG | 1 cut(s) | 462 |
| EcoT22I | ATGCAT | 1 cut(s) | 173 |
| EcoT38I | GRGCYC | 1 cut(s) | 1258 |
| ErhI | CCWWGG | 1 cut(s) | 462 |
| FaeI | CATG | 4 cut(s) | 182, 268, 350, 1124 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 751, 783, 1443, 1475 |
| FaqI | GGGAC | 1 cut(s) | 400 |
| FatI | CATG | 4 cut(s) | 178, 264, 346, 1120 |
| FauNDI | CATATG | 1 cut(s) | 446 |
| FbaI | TGATCA | 1 cut(s) | 181 |
| FblI | GTMKAC | 1 cut(s) | 73 |
| FokI | GGATG | 4 cut(s) | 158, 256, 949, 1022 |
| FriOI | GRGCYC | 1 cut(s) | 1258 |
| FspBI | CTAG | 3 cut(s) | 420, 573, 1477 |
| GlaI | GCGC | 2 cut(s) | 128, 586 |
| HaeII | RGCGCY | 1 cut(s) | 588 |
| HaeIII | GGCC | 3 cut(s) | 345, 1256, 1336 |
| HhaI | GCGC | 2 cut(s) | 129, 587 |
| Hin1II | CATG | 4 cut(s) | 182, 268, 350, 1124 |
| Hin6I | GCGC | 2 cut(s) | 127, 585 |
| HinP1I | GCGC | 2 cut(s) | 127, 585 |
| HincII | GTYRAC | 2 cut(s) | 74, 157 |
| HindII | GTYRAC | 2 cut(s) | 74, 157 |
| HinfI | GANTC | 6 cut(s) | 75, 223, 472, 531, 1407, 1469 |
| HpaI | GTTAAC | 1 cut(s) | 157 |
| HphI | GGTGA | 2 cut(s) | 253, 701 |
| Hpy166II | GTNNAC | 4 cut(s) | 74, 157, 1031, 1135 |
| Hpy188I | TCNGA | 7 cut(s) | 142, 201, 274, 508, 682, 1057, 1468 |
| Hpy188III | TCNNGA | 1 cut(s) | 1193 |
| Hpy8I | GTNNAC | 4 cut(s) | 74, 157, 1031, 1135 |
| HpyAV | CCTTC | 1 cut(s) | 355 |
| HpyCH4III | ACNGT | 1 cut(s) | 1433 |
| HpyCH4IV | ACGT | 2 cut(s) | 433, 1181 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 168, 312, 524, 768, 787 |
| HpyF3I | CTNAG | 3 cut(s) | 117, 714, 1260 |
| HpySE526I | ACGT | 2 cut(s) | 433, 1181 |
| Hsp92II | CATG | 4 cut(s) | 182, 268, 350, 1124 |
| HspAI | GCGC | 2 cut(s) | 127, 585 |
| Ksp22I | TGATCA | 1 cut(s) | 181 |
| KspAI | GTTAAC | 1 cut(s) | 157 |
| Kzo9I | GATC | 4 cut(s) | 142, 181, 541, 820 |
| LweI | GCATC | 4 cut(s) | 92, 180, 862, 877 |
| MaeI | CTAG | 3 cut(s) | 420, 573, 1477 |
| MaeII | ACGT | 2 cut(s) | 433, 1181 |
| MaeIII | GTNAC | 3 cut(s) | 211, 379, 1177 |
| MalI | GATC | 4 cut(s) | 144, 183, 543, 822 |
| MboI | GATC | 4 cut(s) | 142, 181, 541, 820 |
| MboII | GAAGA | 7 cut(s) | 470, 575, 669, 1038, 1334, 1339, 1388 |
| MfeI | CAATTG | 1 cut(s) | 1304 |
| MflI | RGATCY | 1 cut(s) | 820 |
| MhlI | GDGCHC | 3 cut(s) | 413, 944, 1258 |
| MluCI | AATT | 3 cut(s) | 451, 1221, 1304 |
| MlyI | GAGTC | 2 cut(s) | 69, 1478 |
| MmeI | TCCRAC | 2 cut(s) | 199, 798 |
| Mph1103I | ATGCAT | 1 cut(s) | 173 |
| MroXI | GAANNNNTTC | 1 cut(s) | 471 |
| MseI | TTAA | 7 cut(s) | 33, 156, 558, 600, 1088, 1289, 1299 |
| MslI | CAYNNNNRTG | 3 cut(s) | 351, 912, 1359 |
| MspCI | CTTAAG | 1 cut(s) | 1288 |
| MspR9I | CCNGG | 2 cut(s) | 1242, 1338 |
| MunI | CAATTG | 1 cut(s) | 1304 |
| MvaI | CCWGG | 2 cut(s) | 1242, 1338 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 168, 312, 524, 768, 787 |
| NdeI | CATATG | 1 cut(s) | 446 |
| NdeII | GATC | 4 cut(s) | 142, 181, 541, 820 |
| NlaIII | CATG | 4 cut(s) | 182, 268, 350, 1124 |
| NlaIV | GGNNCC | 3 cut(s) | 822, 1256, 1257 |
| NmeAIII | GCCGAG | 2 cut(s) | 382, 631 |
| NmuCI | GTSAC | 2 cut(s) | 379, 1177 |
| NsiI | ATGCAT | 1 cut(s) | 173 |
| NspV | TTCGAA | 1 cut(s) | 1448 |
| PdmI | GAANNNNTTC | 1 cut(s) | 471 |
| PfeI | GAWTC | 4 cut(s) | 223, 472, 531, 1407 |
| PflFI | GACNNNGTC | 1 cut(s) | 401 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 468 |
| PfoI | TCCNGGA | 1 cut(s) | 1240 |
| PleI | GAGTC | 2 cut(s) | 69, 1477 |
| PmaCI | CACGTG | 1 cut(s) | 1182 |
| PmlI | CACGTG | 1 cut(s) | 1182 |
| PpsI | GAGTC | 2 cut(s) | 69, 1477 |
| Ppu21I | YACGTR | 1 cut(s) | 1182 |
| PshAI | GACNNNNGTC | 1 cut(s) | 254 |
| PshBI | ATTAAT | 1 cut(s) | 33 |
| PsiI | TTATAA | 1 cut(s) | 393 |
| Psp6I | CCWGG | 2 cut(s) | 1240, 1336 |
| PspCI | CACGTG | 1 cut(s) | 1182 |
| PspGI | CCWGG | 2 cut(s) | 1240, 1336 |
| PspN4I | GGNNCC | 3 cut(s) | 822, 1256, 1257 |
| PspOMI | GGGCCC | 1 cut(s) | 1254 |
| PspPI | GGNCC | 3 cut(s) | 1254, 1255, 1334 |
| PsuI | RGATCY | 1 cut(s) | 820 |
| PsyI | GACNNNGTC | 1 cut(s) | 401 |
| RsaI | GTAC | 1 cut(s) | 1136 |
| RsaNI | GTAC | 1 cut(s) | 1135 |
| RseI | CAYNNNNRTG | 3 cut(s) | 351, 912, 1359 |
| SalI | GTCGAC | 1 cut(s) | 72 |
| SaqAI | TTAA | 7 cut(s) | 33, 156, 558, 600, 1088, 1289, 1299 |
| Sau3AI | GATC | 4 cut(s) | 142, 181, 541, 820 |
| Sau96I | GGNCC | 3 cut(s) | 1254, 1255, 1334 |
| SchI | GAGTC | 2 cut(s) | 69, 1478 |
| ScrFI | CCNGG | 2 cut(s) | 1242, 1338 |
| SduI | GDGCHC | 3 cut(s) | 413, 944, 1258 |
| SfaNI | GCATC | 4 cut(s) | 92, 180, 862, 877 |
| SfcI | CTRYAG | 1 cut(s) | 229 |
| SfuI | TTCGAA | 1 cut(s) | 1448 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 351, 912, 1359 |
| SmlI | CTYRAG | 1 cut(s) | 1288 |
| SmoI | CTYRAG | 1 cut(s) | 1288 |
| SpeI | ACTAGT | 1 cut(s) | 572 |
| Sse9I | AATT | 3 cut(s) | 451, 1221, 1304 |
| SsiI | CCGC | 3 cut(s) | 160, 934, 1397 |
| SspI | AATATT | 2 cut(s) | 556, 832 |
| SspMI | CTAG | 3 cut(s) | 420, 573, 1477 |
| StyD4I | CCNGG | 2 cut(s) | 1240, 1336 |
| StyI | CCWWGG | 1 cut(s) | 462 |
| TaaI | ACNGT | 1 cut(s) | 1433 |
| TaiI | ACGT | 2 cut(s) | 436, 1184 |
| TaqI | TCGA | 4 cut(s) | 60, 73, 100, 1448 |
| TaqII | GACCGA | 1 cut(s) | 813 |
| TasI | AATT | 3 cut(s) | 451, 1221, 1304 |
| TatI | WGTACW | 1 cut(s) | 1134 |
| TfiI | GAWTC | 4 cut(s) | 223, 472, 531, 1407 |
| Tru1I | TTAA | 7 cut(s) | 33, 156, 558, 600, 1088, 1289, 1299 |
| Tru9I | TTAA | 7 cut(s) | 33, 156, 558, 600, 1088, 1289, 1299 |
| TscAI | CASTG | 1 cut(s) | 1438 |
| TseFI | GTSAC | 2 cut(s) | 379, 1177 |
| Tsp45I | GTSAC | 2 cut(s) | 379, 1177 |
| TspDTI | ATGAA | 8 cut(s) | 363, 523, 856, 1007, 1025, 1069, 1109, 1362 |
| TspGWI | ACGGA | 1 cut(s) | 813 |
| TspRI | CASTG | 1 cut(s) | 1438 |
| Tth111I | GACNNNGTC | 1 cut(s) | 401 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 468 |
| Vha464I | CTTAAG | 1 cut(s) | 1288 |
| VspI | ATTAAT | 1 cut(s) | 33 |
| XapI | RAATTY | 1 cut(s) | 1221 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1118 |
| XmiI | GTMKAC | 1 cut(s) | 73 |
| XmnI | GAANNNNTTC | 1 cut(s) | 471 |
| XspI | CTAG | 3 cut(s) | 420, 573, 1477 |
| Zsp2I | ATGCAT | 1 cut(s) | 173 |