Rorug06G0395100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000270
Physical Location & Seq
Forward (+)
54043876 .. 54044508
633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0395100.1

Sequence Viewer

Length: 510 bp
ATGGAGAAGAAACACCTAAGAATGGTGTTGTATTACCCATCAATGGGTGTGACAGAGCCCAGTGAAGTCACCAGGAGGCGTAGAGAGTCTATTTCGGGAGCGCTTATAAGTTTTCCGATAATGACAGGCCGATTGGAGAGGAATGAGAGGGGGCAGTGGTCGGCGAAGTACAATGACGCTGGAGTGAGAATGGTGGAAGCTAGGGATAAAGGGACTTTGGAGGAGTGGCTTAGAAATGTGGATAGGGAGAAGGAGCTTATGCTTGTCTATTGGGAGGAAATGGACCACCATCCCTTATTTTGCTTACTGAATTTGAGGATGCATGGTGGTTTAGCAATTGGGCTAAGCTGCACTCATCTCCTGGCAGATCCCACTTTGGCAACCGTGTTCCTTAAGGCCTGGGCTGACACAAGCTTCCCCGGACAAATGTTGCAGCCTCCGCTTTTCCACCCACTGCCACCCCGTAGACCCGGAAACAGAACACCCGATTCAGGCCCTATACCTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

169

Amino Acids

19.38

Weight (kDa)

8.64

Isoelectric Point (pI)

49.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 17 - 147 4e-16 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 107
AccI GTMKAC 1 cut(s) 466
AciI CCGC 1 cut(s) 440
AclWI GGATC 1 cut(s) 362
AcsI RAATTY 1 cut(s) 310
AfaI GTAC 1 cut(s) 170
AfeI AGCGCT 1 cut(s) 102
AfiI CCNNNNNNNGG 4 cut(s) 22, 43, 44, 491
AflII CTTAAG 1 cut(s) 392
AjnI CCWGG 3 cut(s) 71, 360, 398
AluBI AGCT 4 cut(s) 200, 256, 348, 414
AluI AGCT 4 cut(s) 200, 256, 348, 414
AlwI GGATC 1 cut(s) 362
Aor51HI AGCGCT 1 cut(s) 102
AoxI GGCC 3 cut(s) 127, 396, 493
ApeKI GCWGC 2 cut(s) 348, 433
ApoI RAATTY 1 cut(s) 310
AspLEI GCGC 1 cut(s) 103
AspS9I GGNCC 2 cut(s) 283, 494
AsuC2I CCSGG 2 cut(s) 420, 471
AsuHPI GGTGA 1 cut(s) 61
AvaII GGWCC 1 cut(s) 283
BanII GRGCYC 1 cut(s) 60
BbvI GCAGC 2 cut(s) 335, 445
BccI CCATC 2 cut(s) 46, 297
BciT130I CCWGG 3 cut(s) 73, 362, 400
BcnI CCSGG 2 cut(s) 420, 471
BfaI CTAG 1 cut(s) 201
BfoI RGCGCY 1 cut(s) 104
BfrI CTTAAG 1 cut(s) 392
BisI GCNGC 2 cut(s) 349, 434
BlpI GCTNAGC 1 cut(s) 344
BlsI GCNGC 2 cut(s) 350, 435
Bme1390I CCNGG 5 cut(s) 73, 362, 400, 420, 471
Bme18I GGWCC 1 cut(s) 283
BmgT120I GGNCC 2 cut(s) 283, 494
BmrFI CCNGG 5 cut(s) 73, 362, 400, 420, 471
BmrI ACTGGG 1 cut(s) 54
BmsI GCATC 1 cut(s) 309
BmuI ACTGGG 1 cut(s) 54
BpmI CTGGAG 1 cut(s) 201
Bpu1102I GCTNAGC 1 cut(s) 344
BpuMI CCSGG 2 cut(s) 420, 471
BsaJI CCNNGG 2 cut(s) 399, 418
Bsc4I CCNNNNNNNGG 4 cut(s) 22, 43, 44, 491
Bse1I ACTGG 1 cut(s) 60
BseBI CCWGG 3 cut(s) 73, 362, 400
BseDI CCNNGG 2 cut(s) 399, 418
BseGI GGATG 2 cut(s) 289, 324
BseLI CCNNNNNNNGG 4 cut(s) 22, 43, 44, 491
BseNI ACTGG 1 cut(s) 60
BseRI GAGGAG 1 cut(s) 236
BseXI GCAGC 2 cut(s) 335, 445
BsgI GTGCAG 1 cut(s) 334
BshFI GGCC 3 cut(s) 129, 398, 495
BsiSI CCGG 2 cut(s) 420, 471
BslFI GGGAC 1 cut(s) 226
BslI CCNNNNNNNGG 4 cut(s) 22, 43, 44, 491
BsmFI GGGAC 1 cut(s) 226
BsnI GGCC 3 cut(s) 129, 398, 495
Bsp1286I GDGCHC 1 cut(s) 60
Bsp143I GATC 1 cut(s) 367
Bsp1720I GCTNAGC 1 cut(s) 344
BspACI CCGC 1 cut(s) 440
BspANI GGCC 3 cut(s) 129, 398, 495
BspPI GGATC 1 cut(s) 362
BspTI CTTAAG 1 cut(s) 392
BsrI ACTGG 1 cut(s) 60
BssECI CCNNGG 2 cut(s) 399, 418
BssMI GATC 1 cut(s) 367
Bst2UI CCWGG 3 cut(s) 73, 362, 400
Bst4CI ACNGT 1 cut(s) 385
BstAFI CTTAAG 1 cut(s) 392
BstDEI CTNAG 3 cut(s) 17, 230, 344
BstF5I GGATG 2 cut(s) 289, 324
BstH2I RGCGCY 1 cut(s) 104
BstHHI GCGC 1 cut(s) 103
BstKTI GATC 1 cut(s) 370
BstMBI GATC 1 cut(s) 367
BstMWI GCNNNNNNNGC 1 cut(s) 439
BstNI CCWGG 3 cut(s) 73, 362, 400
BstSCI CCNGG 5 cut(s) 71, 360, 398, 418, 469
BstV1I GCAGC 2 cut(s) 335, 445
BstX2I RGATCY 1 cut(s) 367
BstYI RGATCY 1 cut(s) 367
BsuRI GGCC 3 cut(s) 129, 398, 495
BtsCI GGATG 2 cut(s) 289, 324
BtsI GCAGTG 2 cut(s) 161, 452
BtsIMutI CAGTG 3 cut(s) 67, 161, 452
CfoI GCGC 1 cut(s) 103
Cfr13I GGNCC 2 cut(s) 283, 494
CseI GACGC 1 cut(s) 185
Csp6I GTAC 1 cut(s) 169
CviAII CATG 1 cut(s) 323
CviQI GTAC 1 cut(s) 169
DdeI CTNAG 3 cut(s) 17, 230, 344
DpnI GATC 1 cut(s) 369
DpnII GATC 1 cut(s) 367
Eco147I AGGCCT 1 cut(s) 398
Eco24I GRGCYC 1 cut(s) 60
Eco47I GGWCC 1 cut(s) 283
Eco47III AGCGCT 1 cut(s) 102
EcoO109I RGGNCCY 1 cut(s) 494
EcoRII CCWGG 3 cut(s) 71, 360, 398
EcoT22I ATGCAT 1 cut(s) 324
EcoT38I GRGCYC 1 cut(s) 60
FaeI CATG 1 cut(s) 326
FaiI YATR 4 cut(s) 107, 260, 324, 500
FaqI GGGAC 1 cut(s) 226
FatI CATG 1 cut(s) 322
FblI GTMKAC 1 cut(s) 466
Fnu4HI GCNGC 2 cut(s) 349, 434
FokI GGATG 2 cut(s) 276, 331
FriOI GRGCYC 1 cut(s) 60
Fsp4HI GCNGC 2 cut(s) 349, 434
FspBI CTAG 1 cut(s) 201
GlaI GCGC 1 cut(s) 102
GluI GCNGC 2 cut(s) 349, 434
GsuI CTGGAG 1 cut(s) 201
HaeII RGCGCY 1 cut(s) 104
HaeIII GGCC 3 cut(s) 129, 398, 495
HapII CCGG 2 cut(s) 420, 471
HgaI GACGC 1 cut(s) 185
HhaI GCGC 1 cut(s) 103
Hin1II CATG 1 cut(s) 326
Hin6I GCGC 1 cut(s) 101
HinP1I GCGC 1 cut(s) 101
HindIII AAGCTT 1 cut(s) 412
HinfI GANTC 2 cut(s) 86, 488
HpaII CCGG 2 cut(s) 420, 471
HphI GGTGA 1 cut(s) 61
Hpy166II GTNNAC 1 cut(s) 467
Hpy188I TCNGA 1 cut(s) 117
Hpy188III TCNNGA 1 cut(s) 96
Hpy8I GTNNAC 1 cut(s) 467
HpyAV CCTTC 1 cut(s) 244
HpyCH4III ACNGT 1 cut(s) 385
HpyCH4V TGCA 3 cut(s) 322, 351, 433
HpyF10VI GCNNNNNNNGC 1 cut(s) 439
HpyF3I CTNAG 3 cut(s) 17, 230, 344
Hsp92II CATG 1 cut(s) 326
HspAI GCGC 1 cut(s) 101
Kzo9I GATC 1 cut(s) 367
LmnI GCTCC 2 cut(s) 98, 253
Lsp1109I GCAGC 2 cut(s) 335, 445
LweI GCATC 1 cut(s) 309
MaeI CTAG 1 cut(s) 201
MaeIII GTNAC 2 cut(s) 49, 67
MalI GATC 1 cut(s) 369
MboI GATC 1 cut(s) 367
MboII GAAGA 1 cut(s) 19
MfeI CAATTG 1 cut(s) 336
MflI RGATCY 1 cut(s) 367
MhlI GDGCHC 1 cut(s) 60
MluCI AATT 2 cut(s) 310, 336
MlyI GAGTC 1 cut(s) 95
MnlI CCTC 7 cut(s) 69, 132, 141, 214, 268, 309, 447
Mph1103I ATGCAT 1 cut(s) 324
MseI TTAA 1 cut(s) 393
MspCI CTTAAG 1 cut(s) 392
MspI CCGG 2 cut(s) 420, 471
MspR9I CCNGG 5 cut(s) 73, 362, 400, 420, 471
MunI CAATTG 1 cut(s) 336
MvaI CCWGG 3 cut(s) 73, 362, 400
MwoI GCNNNNNNNGC 1 cut(s) 439
NciI CCSGG 2 cut(s) 420, 471
NdeII GATC 1 cut(s) 367
NlaIII CATG 1 cut(s) 326
NmuCI GTSAC 2 cut(s) 49, 67
NsiI ATGCAT 1 cut(s) 324
PceI AGGCCT 1 cut(s) 398
PfeI GAWTC 1 cut(s) 488
PkrI GCNGC 2 cut(s) 350, 435
PleI GAGTC 1 cut(s) 94
PpsI GAGTC 1 cut(s) 94
PsiI TTATAA 1 cut(s) 107
Psp6I CCWGG 3 cut(s) 71, 360, 398
PspGI CCWGG 3 cut(s) 71, 360, 398
PspPI GGNCC 2 cut(s) 283, 494
PsuI RGATCY 1 cut(s) 367
RsaI GTAC 1 cut(s) 170
RsaNI GTAC 1 cut(s) 169
SaqAI TTAA 1 cut(s) 393
SatI GCNGC 2 cut(s) 349, 434
Sau3AI GATC 1 cut(s) 367
Sau96I GGNCC 2 cut(s) 283, 494
SchI GAGTC 1 cut(s) 95
ScrFI CCNGG 5 cut(s) 73, 362, 400, 420, 471
SduI GDGCHC 1 cut(s) 60
SetI ASST 6 cut(s) 18, 202, 258, 350, 416, 505
SfaNI GCATC 1 cut(s) 309
SinI GGWCC 1 cut(s) 283
SmlI CTYRAG 1 cut(s) 392
SmoI CTYRAG 1 cut(s) 392
Sse9I AATT 2 cut(s) 310, 336
SseBI AGGCCT 1 cut(s) 398
SsiI CCGC 1 cut(s) 440
SspMI CTAG 1 cut(s) 201
StuI AGGCCT 1 cut(s) 398
StyD4I CCNGG 5 cut(s) 71, 360, 398, 418, 469
TaaI ACNGT 1 cut(s) 385
TasI AATT 2 cut(s) 310, 336
TatI WGTACW 1 cut(s) 168
TfiI GAWTC 1 cut(s) 488
Tru1I TTAA 1 cut(s) 393
Tru9I TTAA 1 cut(s) 393
TscAI CASTG 3 cut(s) 67, 161, 459
TseFI GTSAC 2 cut(s) 49, 67
TseI GCWGC 2 cut(s) 348, 433
Tsp45I GTSAC 2 cut(s) 49, 67
TspRI CASTG 3 cut(s) 67, 161, 459
Vha464I CTTAAG 1 cut(s) 392
VpaK11BI GGWCC 1 cut(s) 283
XapI RAATTY 1 cut(s) 310
XmiI GTMKAC 1 cut(s) 466
XspI CTAG 1 cut(s) 201
Zsp2I ATGCAT 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.