RchiOBHm_Chr3g0457271

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000270
Physical Location & Seq
Reverse (-)
6462426 .. 6463115
690 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ42402

Sequence Viewer

Length: 690 bp
ATGACTACTTTTAACGATCTCCCTGACTTTGTATTGGTTGAAATCCTTTGTCGACTTCCTCCCAACTATAAATTCAGTTTCCAGTGCAAGTGTGTGTCGAAGCGTTGGCTCAGTCTCCTCTCTGATCCTTATTTTGCTGCTCGCTTTCAACGCCTGCAGCTCGATGAATCCAAGCCCGTTATAACTACACTAACTTTGTGGAATAATTGCTCCTTCAAAAGAACCATAACGTCCAAAAATCCAGTGTTCAACACAATTGATTTCTCTCTGAGTTTCCTCCCATGTTATAAACACCAAGAACGTAGGGTCGTGCTAGGGGCGCATAAAGACTTGCTCTTGTGCTGCGCAACCAGGTATTATCAGTGTGATTACTACATTTGCAATCCGTACACCAAGCAATGGTTTGCTCTCCCTCCTTCCCCTCAAGTCCACCAAACCCTACCGCATGTGGGGTTCGTCGTCCAAGAATTAGAAGGTCAAGATAGTAGTGCTATTACCTATTCCATCATTCCAAATGCTCAGTATAACTGGAGGGTTGTTCGGATCATTCCAAATCTATCAAAACTGAACTTTCTTGTTGAAATCTTCTCTTCTGAAACTCGTGAGTGGAGAGAGTTGGATCAACTTGGATGTGTTATGTCCAGGAAGGATTCATTCTTTCTATCATTATCCCGATACCAGTTCTCGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

229

Amino Acids

26.93

Weight (kDa)

8.78

Isoelectric Point (pI)

40.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 4 - 45 3.2e-07 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 182, 288
Acc16I TGCGCA 1 cut(s) 346
AccB7I CCANNNNNTGG 1 cut(s) 399
AccI GTMKAC 1 cut(s) 52
AciI CCGC 1 cut(s) 443
AclWI GGATC 3 cut(s) 119, 551, 627
AcsI RAATTY 1 cut(s) 71
AfaI GTAC 1 cut(s) 389
AfiI CCNNNNNNNGG 2 cut(s) 399, 449
AgsI TTSAA 5 cut(s) 41, 149, 217, 250, 581
AjnI CCWGG 2 cut(s) 350, 641
AjuI GAANNNNNNNTTGG 2 cut(s) 56, 88
AluBI AGCT 1 cut(s) 160
AluI AGCT 1 cut(s) 160
Alw26I GTCTC 1 cut(s) 119
AlwI GGATC 3 cut(s) 119, 551, 627
ApeKI GCWGC 3 cut(s) 137, 157, 342
ApoI RAATTY 1 cut(s) 71
AspLEI GCGC 2 cut(s) 322, 347
BauI CACGAG 1 cut(s) 600
BbvI GCAGC 3 cut(s) 124, 169, 329
BccI CCATC 1 cut(s) 512
BciT130I CCWGG 2 cut(s) 352, 643
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 1 cut(s) 314
BfmI CTRYAG 1 cut(s) 155
BisI GCNGC 3 cut(s) 138, 158, 343
BlsI GCNGC 3 cut(s) 139, 159, 344
Bme1390I CCNGG 2 cut(s) 352, 643
BmrFI CCNGG 2 cut(s) 352, 643
BpmI CTGGAG 1 cut(s) 550
BpuEI CTTGAG 1 cut(s) 408
Bsc4I CCNNNNNNNGG 2 cut(s) 399, 449
Bse1I ACTGG 4 cut(s) 82, 242, 533, 679
Bse3DI GCAATG 1 cut(s) 404
BseBI CCWGG 2 cut(s) 352, 643
BseGI GGATG 1 cut(s) 635
BseLI CCNNNNNNNGG 2 cut(s) 399, 449
BseMI GCAATG 1 cut(s) 404
BseMII CTCAG 3 cut(s) 124, 260, 533
BseNI ACTGG 4 cut(s) 82, 242, 533, 679
BseRI GAGGAG 1 cut(s) 107
BseXI GCAGC 3 cut(s) 124, 169, 329
BslI CCNNNNNNNGG 2 cut(s) 399, 449
BsmAI GTCTC 1 cut(s) 119
Bsp143I GATC 4 cut(s) 16, 124, 543, 619
BspACI CCGC 1 cut(s) 443
BspCNI CTCAG 3 cut(s) 123, 261, 532
BspMAI CTGCAG 1 cut(s) 159
BspPI GGATC 3 cut(s) 119, 551, 627
BsrDI GCAATG 1 cut(s) 404
BsrI ACTGG 4 cut(s) 82, 242, 533, 679
BssMI GATC 4 cut(s) 16, 124, 543, 619
BssSI CACGAG 1 cut(s) 600
Bst2BI CACGAG 1 cut(s) 600
Bst2UI CCWGG 2 cut(s) 352, 643
Bst6I CTCTTC 1 cut(s) 595
BstC8I GCNNGC 2 cut(s) 142, 155
BstDEI CTNAG 3 cut(s) 110, 269, 519
BstF5I GGATG 1 cut(s) 635
BstHHI GCGC 2 cut(s) 322, 347
BstKTI GATC 4 cut(s) 19, 127, 546, 622
BstMAI GTCTC 1 cut(s) 119
BstMBI GATC 4 cut(s) 16, 124, 543, 619
BstMWI GCNNNNNNNGC 2 cut(s) 150, 319
BstNI CCWGG 2 cut(s) 352, 643
BstNSI RCATGY 1 cut(s) 449
BstSCI CCNGG 2 cut(s) 350, 641
BstSFI CTRYAG 1 cut(s) 155
BstV1I GCAGC 3 cut(s) 124, 169, 329
BtsCI GGATG 1 cut(s) 635
BtsIMutI CAGTG 3 cut(s) 89, 249, 368
Cac8I GCNNGC 2 cut(s) 142, 155
CfoI GCGC 2 cut(s) 322, 347
CsiI ACCWGGT 1 cut(s) 350
Csp6I GTAC 1 cut(s) 388
CviAII CATG 2 cut(s) 282, 446
CviJI RGCY 3 cut(s) 109, 160, 175
CviKI_1 RGCY 3 cut(s) 109, 160, 175
CviQI GTAC 1 cut(s) 388
DdeI CTNAG 3 cut(s) 110, 269, 519
DpnI GATC 4 cut(s) 18, 126, 545, 621
DpnII GATC 4 cut(s) 16, 124, 543, 619
Eam1104I CTCTTC 1 cut(s) 595
EarI CTCTTC 1 cut(s) 595
EcoRII CCWGG 2 cut(s) 350, 641
FaeI CATG 2 cut(s) 285, 449
FaiI YATR 9 cut(s) 69, 182, 227, 283, 288, 324, 447, 525, 638
FatI CATG 2 cut(s) 281, 445
FblI GTMKAC 1 cut(s) 52
Fnu4HI GCNGC 3 cut(s) 138, 158, 343
FokI GGATG 1 cut(s) 642
Fsp4HI GCNGC 3 cut(s) 138, 158, 343
FspBI CTAG 1 cut(s) 314
FspI TGCGCA 1 cut(s) 346
GlaI GCGC 2 cut(s) 321, 346
GluI GCNGC 3 cut(s) 138, 158, 343
GsuI CTGGAG 1 cut(s) 550
HhaI GCGC 2 cut(s) 322, 347
Hin1II CATG 2 cut(s) 285, 449
Hin6I GCGC 2 cut(s) 320, 345
HinP1I GCGC 2 cut(s) 320, 345
HincII GTYRAC 1 cut(s) 53
HindII GTYRAC 1 cut(s) 53
HinfI GANTC 2 cut(s) 167, 650
Hpy166II GTNNAC 3 cut(s) 53, 390, 430
Hpy188I TCNGA 4 cut(s) 124, 270, 543, 595
Hpy188III TCNNGA 3 cut(s) 479, 602, 672
Hpy8I GTNNAC 3 cut(s) 53, 390, 430
Hpy99I CGWCG 1 cut(s) 461
HpyAV CCTTC 4 cut(s) 223, 426, 467, 640
HpyCH4IV ACGT 2 cut(s) 230, 301
HpyCH4V TGCA 3 cut(s) 87, 157, 381
HpyF10VI GCNNNNNNNGC 2 cut(s) 150, 319
HpyF3I CTNAG 3 cut(s) 110, 269, 519
HpySE526I ACGT 2 cut(s) 230, 301
Hsp92II CATG 2 cut(s) 285, 449
HspAI GCGC 2 cut(s) 320, 345
Kzo9I GATC 4 cut(s) 16, 124, 543, 619
LmnI GCTCC 1 cut(s) 215
LpnPI CCDG 9 cut(s) 36, 95, 167, 255, 337, 364, 514, 628, 655
Lsp1109I GCAGC 3 cut(s) 124, 169, 329
MabI ACCWGGT 1 cut(s) 350
MaeI CTAG 1 cut(s) 314
MaeII ACGT 2 cut(s) 230, 301
MalI GATC 4 cut(s) 18, 126, 545, 621
MboI GATC 4 cut(s) 16, 124, 543, 619
MboII GAAGA 2 cut(s) 577, 582
MfeI CAATTG 1 cut(s) 255
MluCI AATT 4 cut(s) 71, 205, 255, 467
MmeI TCCRAC 1 cut(s) 597
MnlI CCTC 6 cut(s) 69, 128, 287, 423, 432, 525
MseI TTAA 1 cut(s) 12
MspR9I CCNGG 2 cut(s) 352, 643
MunI CAATTG 1 cut(s) 255
MvaI CCWGG 2 cut(s) 352, 643
MwoI GCNNNNNNNGC 2 cut(s) 150, 319
NdeII GATC 4 cut(s) 16, 124, 543, 619
NlaIII CATG 2 cut(s) 285, 449
NsbI TGCGCA 1 cut(s) 346
NspI RCATGY 1 cut(s) 449
PfeI GAWTC 2 cut(s) 167, 650
PflMI CCANNNNNTGG 1 cut(s) 399
PfoI TCCNGGA 1 cut(s) 641
PkrI GCNGC 3 cut(s) 139, 159, 344
PsiI TTATAA 2 cut(s) 182, 288
Psp6I CCWGG 2 cut(s) 350, 641
PspGI CCWGG 2 cut(s) 350, 641
PstI CTGCAG 1 cut(s) 159
RsaI GTAC 1 cut(s) 389
RsaNI GTAC 1 cut(s) 388
SalI GTCGAC 1 cut(s) 51
SaqAI TTAA 1 cut(s) 12
SatI GCNGC 3 cut(s) 138, 158, 343
Sau3AI GATC 4 cut(s) 16, 124, 543, 619
ScrFI CCNGG 2 cut(s) 352, 643
SetI ASST 6 cut(s) 162, 233, 304, 356, 478, 500
SexAI ACCWGGT 1 cut(s) 350
SfcI CTRYAG 1 cut(s) 155
SmlI CTYRAG 1 cut(s) 423
SmoI CTYRAG 1 cut(s) 423
Sse9I AATT 4 cut(s) 71, 205, 255, 467
SsiI CCGC 1 cut(s) 443
SspMI CTAG 1 cut(s) 314
StyD4I CCNGG 2 cut(s) 350, 641
TaiI ACGT 2 cut(s) 233, 304
TaqI TCGA 3 cut(s) 52, 98, 162
TasI AATT 4 cut(s) 71, 205, 255, 467
TfiI GAWTC 2 cut(s) 167, 650
Tru1I TTAA 1 cut(s) 12
Tru9I TTAA 1 cut(s) 12
TscAI CASTG 3 cut(s) 89, 249, 368
TseI GCWGC 3 cut(s) 137, 157, 342
TspDTI ATGAA 2 cut(s) 180, 642
TspGWI ACGGA 1 cut(s) 375
TspRI CASTG 3 cut(s) 89, 249, 368
Van91I CCANNNNNTGG 1 cut(s) 399
XapI RAATTY 1 cut(s) 71
XceI RCATGY 1 cut(s) 449
XmiI GTMKAC 1 cut(s) 52
XspI CTAG 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.