FvH4_6g37932

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000270
Physical Location & Seq
Reverse (-)
30014590 .. 30015479
890 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g37932.t1

Sequence Viewer

Length: 780 bp
ATGGAAGTGAGAGTGGGATTCATATGTGATCCCTATTATAACGAAGATGATGATGCACAAGAAAGTTATATTGGTCATGATGGTATGATCCCGGTTAATGTTGATTTTAGGTACGCCGTTGTGCGAATAATTCCTCCAGTCGTGGACTACCAATATGAATTCAACTTTGAGGTCTTCTCTTCTAAGACAGGTGAATGGAGAGAATTGCTTGTACGAAGTCCAGATTCATTTCGGTTCTATAATTTGAGTAATAGTGGAGGCGTTGCTTATAATGGAATGTTGTATTGGTGGAGTGGTTGTGAGAACTTCATTGTTGGGTTTGATCCCTACTCCAACTCCTACTCCAACAAGGAGAAACATAGTCATCGTTTTTGTTTCATTTCGACGCCTAATATAGATGGCGGAAGATTTCCCTTCCCAAGTGTGTGCCAAGGAGGTTTACGGATCTGCCAGTTGTTTCCATATAACATTGGTGAGGAGTTTCCCTTCAACTATTATGATCCCCTCCCCTTCTCGTATGAAAAGGATGGCATCCTTCTTCCGAGTTTGATTGTTTGGGAGTGGAAAGATGAGGGCGATATTGAGGGAGGTGGCGGAAACTGGTGCAATTTGACGGGAAATATTTCTTTAGGCGCAATGGTTATGGAAAATCCATTACTTCGTCAATGGGGAATAAGCAACTTGATAAACCCAATTAGGATGCTAGCTTTCGACCCAAACGATGAGGACATTTTGCGTTTTTCCATTTGTGCTCAGGAGGTGGCCAACACCCCTTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

260

Amino Acids

29.7

Weight (kDa)

4.39

Isoelectric Point (pI)

39.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 37 - 113 7.8e-06 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 39, 270
AciI CCGC 2 cut(s) 402, 594
AclWI GGATC 5 cut(s) 23, 82, 317, 452, 494
AcoI YGGCCR 1 cut(s) 762
AcsI RAATTY 1 cut(s) 158
AcyI GRCGYC 1 cut(s) 386
AfaI GTAC 2 cut(s) 113, 213
AgsI TTSAA 2 cut(s) 163, 490
AjuI GAANNNNNNNTTGG 4 cut(s) 54, 86, 268, 300
AluBI AGCT 1 cut(s) 707
AluI AGCT 1 cut(s) 707
Alw21I GWGCWC 1 cut(s) 754
AlwI GGATC 5 cut(s) 23, 82, 317, 452, 494
AoxI GGCC 1 cut(s) 762
ApoI RAATTY 1 cut(s) 158
Asp700I GAANNNNTTC 1 cut(s) 622
AspLEI GCGC 1 cut(s) 635
AsuC2I CCSGG 1 cut(s) 92
AsuHPI GGTGA 2 cut(s) 203, 485
AsuNHI GCTAGC 1 cut(s) 703
BalI TGGCCA 1 cut(s) 764
BbsI GAAGAC 1 cut(s) 166
Bbv12I GWGCWC 1 cut(s) 754
BccI CCATC 3 cut(s) 74, 392, 521
BceAI ACGGC 1 cut(s) 101
BcnI CCSGG 1 cut(s) 92
BfaI CTAG 2 cut(s) 704, 778
Bme1390I CCNGG 1 cut(s) 92
BmrFI CCNGG 1 cut(s) 92
BmsI GCATC 3 cut(s) 43, 540, 690
BmtI GCTAGC 1 cut(s) 707
BpiI GAAGAC 1 cut(s) 166
BplI GAGNNNNNCTC 2 cut(s) 161, 193
BpmI CTGGAG 1 cut(s) 120
Bpu10I CCTNAGC 1 cut(s) 753
BpuMI CCSGG 1 cut(s) 92
BsaHI GRCGYC 1 cut(s) 386
BsaJI CCNNGG 1 cut(s) 430
BsaXI ACNNNNNCTCC 6 cut(s) 283, 313, 320, 326, 350, 356
Bse1I ACTGG 3 cut(s) 137, 451, 605
Bse3DI GCAATG 1 cut(s) 642
BseDI CCNNGG 1 cut(s) 430
BseGI GGATG 3 cut(s) 531, 532, 705
BseMI GCAATG 1 cut(s) 642
BseMII CTCAG 1 cut(s) 767
BseNI ACTGG 3 cut(s) 137, 451, 605
BseRI GAGGAG 1 cut(s) 491
BshFI GGCC 1 cut(s) 764
BsiHKAI GWGCWC 1 cut(s) 754
BsiSI CCGG 1 cut(s) 92
BsnI GGCC 1 cut(s) 764
Bsp1286I GDGCHC 1 cut(s) 754
Bsp143I GATC 5 cut(s) 28, 87, 322, 444, 499
BspACI CCGC 2 cut(s) 402, 594
BspANI GGCC 1 cut(s) 764
BspCNI CTCAG 1 cut(s) 766
BspHI TCATGA 1 cut(s) 76
BspOI GCTAGC 1 cut(s) 707
BspPI GGATC 5 cut(s) 23, 82, 317, 452, 494
BsrDI GCAATG 1 cut(s) 642
BsrI ACTGG 3 cut(s) 137, 451, 605
BssECI CCNNGG 1 cut(s) 430
BssMI GATC 5 cut(s) 28, 87, 322, 444, 499
BssNI GRCGYC 1 cut(s) 386
BssT1I CCWWGG 1 cut(s) 430
Bst6I CTCTTC 1 cut(s) 184
BstACI GRCGYC 1 cut(s) 386
BstC8I GCNNGC 1 cut(s) 705
BstDEI CTNAG 2 cut(s) 183, 753
BstF5I GGATG 3 cut(s) 531, 532, 705
BstHHI GCGC 1 cut(s) 635
BstKTI GATC 5 cut(s) 31, 90, 325, 447, 502
BstMBI GATC 5 cut(s) 28, 87, 322, 444, 499
BstSCI CCNGG 1 cut(s) 90
BstV2I GAAGAC 1 cut(s) 166
BstX2I RGATCY 1 cut(s) 444
BstYI RGATCY 1 cut(s) 444
BsuRI GGCC 1 cut(s) 764
BtsCI GGATG 3 cut(s) 531, 532, 705
Cac8I GCNNGC 1 cut(s) 705
CciI TCATGA 1 cut(s) 76
CfoI GCGC 1 cut(s) 635
CseI GACGC 1 cut(s) 394
Csp6I GTAC 2 cut(s) 112, 212
CviAII CATG 1 cut(s) 77
CviJI RGCY 2 cut(s) 707, 764
CviKI_1 RGCY 2 cut(s) 707, 764
CviQI GTAC 2 cut(s) 112, 212
DdeI CTNAG 2 cut(s) 183, 753
DpnI GATC 5 cut(s) 30, 89, 324, 446, 501
DpnII GATC 5 cut(s) 28, 87, 322, 444, 499
EaeI YGGCCR 1 cut(s) 762
Eam1104I CTCTTC 1 cut(s) 184
EarI CTCTTC 1 cut(s) 184
EciI GGCGGA 2 cut(s) 417, 609
Eco130I CCWWGG 1 cut(s) 430
EcoRI GAATTC 1 cut(s) 158
EcoT14I CCWWGG 1 cut(s) 430
ErhI CCWWGG 1 cut(s) 430
FaeI CATG 1 cut(s) 80
FatI CATG 1 cut(s) 76
FauNDI CATATG 1 cut(s) 23
FokI GGATG 3 cut(s) 518, 539, 712
FspBI CTAG 2 cut(s) 704, 778
GlaI GCGC 1 cut(s) 634
GsuI CTGGAG 1 cut(s) 120
HaeIII GGCC 1 cut(s) 764
HapII CCGG 1 cut(s) 92
HgaI GACGC 1 cut(s) 394
HhaI GCGC 1 cut(s) 635
Hin1I GRCGYC 1 cut(s) 386
Hin1II CATG 1 cut(s) 80
Hin6I GCGC 1 cut(s) 633
HinP1I GCGC 1 cut(s) 633
HinfI GANTC 2 cut(s) 18, 224
HpaII CCGG 1 cut(s) 92
HphI GGTGA 2 cut(s) 203, 485
Hpy166II GTNNAC 2 cut(s) 145, 440
Hpy188I TCNGA 1 cut(s) 543
Hpy188III TCNNGA 3 cut(s) 77, 221, 755
Hpy8I GTNNAC 2 cut(s) 145, 440
Hpy99I CGWCG 1 cut(s) 388
HpyAV CCTTC 4 cut(s) 424, 496, 520, 545
HpyCH4V TGCA 2 cut(s) 56, 606
HpyF3I CTNAG 2 cut(s) 183, 753
Hsp92I GRCGYC 1 cut(s) 386
Hsp92II CATG 1 cut(s) 80
HspAI GCGC 1 cut(s) 633
Kzo9I GATC 5 cut(s) 28, 87, 322, 444, 499
LpnPI CCDG 7 cut(s) 105, 150, 174, 234, 464, 586, 740
LweI GCATC 3 cut(s) 43, 540, 690
MaeI CTAG 2 cut(s) 704, 778
MalI GATC 5 cut(s) 30, 89, 324, 446, 501
MboI GATC 5 cut(s) 28, 87, 322, 444, 499
MboII GAAGA 5 cut(s) 56, 166, 171, 417, 530
MflI RGATCY 1 cut(s) 444
MhlI GDGCHC 1 cut(s) 754
MlsI TGGCCA 1 cut(s) 764
MluCI AATT 6 cut(s) 129, 158, 203, 241, 607, 693
MluNI TGGCCA 1 cut(s) 764
MmeI TCCRAC 2 cut(s) 357, 369
Mox20I TGGCCA 1 cut(s) 764
MroXI GAANNNNTTC 1 cut(s) 622
MscI TGGCCA 1 cut(s) 764
MseI TTAA 1 cut(s) 96
Msp20I TGGCCA 1 cut(s) 764
MspI CCGG 1 cut(s) 92
MspR9I CCNGG 1 cut(s) 92
NciI CCSGG 1 cut(s) 92
NdeI CATATG 1 cut(s) 23
NdeII GATC 5 cut(s) 28, 87, 322, 444, 499
NheI GCTAGC 1 cut(s) 703
NlaIII CATG 1 cut(s) 80
PagI TCATGA 1 cut(s) 76
PcsI WCGNNNNNNNCGW 1 cut(s) 717
PdmI GAANNNNTTC 1 cut(s) 622
PfeI GAWTC 2 cut(s) 18, 224
PsiI TTATAA 2 cut(s) 39, 270
PsuI RGATCY 1 cut(s) 444
RsaI GTAC 2 cut(s) 113, 213
RsaNI GTAC 2 cut(s) 112, 212
SaqAI TTAA 1 cut(s) 96
Sau3AI GATC 5 cut(s) 28, 87, 322, 444, 499
ScrFI CCNGG 1 cut(s) 92
SduI GDGCHC 1 cut(s) 754
SetI ASST 7 cut(s) 113, 174, 193, 439, 592, 709, 762
SfaNI GCATC 3 cut(s) 43, 540, 690
Sse9I AATT 6 cut(s) 129, 158, 203, 241, 607, 693
SsiI CCGC 2 cut(s) 402, 594
SspI AATATT 1 cut(s) 622
SspMI CTAG 2 cut(s) 704, 778
StyD4I CCNGG 1 cut(s) 90
StyI CCWWGG 1 cut(s) 430
TaqI TCGA 2 cut(s) 383, 711
TasI AATT 6 cut(s) 129, 158, 203, 241, 607, 693
TfiI GAWTC 2 cut(s) 18, 224
Tru1I TTAA 1 cut(s) 96
Tru9I TTAA 1 cut(s) 96
TspDTI ATGAA 6 cut(s) 10, 171, 216, 298, 367, 534
TspGWI ACGGA 1 cut(s) 457
XapI RAATTY 1 cut(s) 158
XmnI GAANNNNTTC 1 cut(s) 622
XspI CTAG 2 cut(s) 704, 778
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.