Rh2BG497300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0000270
Physical Location & Seq
Reverse (-)
70301688 .. 70303683
1996 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG497300.1

Sequence Viewer

Length: 291 bp
ATGCCGTGTATGAGTGTGTGGGAATTGAAAGATGATGTTGATGACGATGTAAATGATTGGTATAACTTGACAGGCATCATTGACCTGAGCACAATGGTTTTCGGAAATCCATTAACTCGCGAATGGGGATTCTACTCGAAGACCCCTTTGCTTGACTCAATCATGGTGGTGCCTTCAAGCTGGATGGTGATGGGTGTGCGCGAGGTACTGATGGAGAGTTCCTGGGTGCGCTATATATCATGTATGTTCACTTTGAGCCTTCCTCTAAGTGGACAAACCCACTTTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

11.03

Weight (kDa)

4.21

Isoelectric Point (pI)

37.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 169
AccII CGCG 2 cut(s) 120, 201
AfaI GTAC 1 cut(s) 207
AfiI CCNNNNNNNGG 1 cut(s) 269
AgsI TTSAA 2 cut(s) 28, 177
AjnI CCWGG 1 cut(s) 221
AluBI AGCT 1 cut(s) 180
AluI AGCT 1 cut(s) 180
Alw21I GWGCWC 1 cut(s) 92
AspLEI GCGC 2 cut(s) 201, 231
AsuHPI GGTGA 1 cut(s) 199
BanI GGYRCC 1 cut(s) 169
BbsI GAAGAC 1 cut(s) 146
Bbv12I GWGCWC 1 cut(s) 92
BccI CCATC 3 cut(s) 178, 184, 205
BciT130I CCWGG 1 cut(s) 223
Bme1390I CCNGG 1 cut(s) 223
BmiI GGNNCC 1 cut(s) 171
BmrFI CCNGG 1 cut(s) 223
BmsI GCATC 1 cut(s) 84
BpiI GAAGAC 1 cut(s) 146
BplI GAGNNNNNCTC 2 cut(s) 247, 279
Bpu10I CCTNAGC 1 cut(s) 86
BsaJI CCNNGG 1 cut(s) 222
Bsc4I CCNNNNNNNGG 1 cut(s) 269
BseBI CCWGG 1 cut(s) 223
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 1 cut(s) 189
BseLI CCNNNNNNNGG 1 cut(s) 269
BseMII CTCAG 1 cut(s) 77
Bsh1236I CGCG 2 cut(s) 120, 201
BshNI GGYRCC 1 cut(s) 169
BsiHKAI GWGCWC 1 cut(s) 92
BslI CCNNNNNNNGG 1 cut(s) 269
Bsp1286I GDGCHC 1 cut(s) 92
Bsp68I TCGCGA 1 cut(s) 120
BspCNI CTCAG 1 cut(s) 78
BspFNI CGCG 2 cut(s) 120, 201
BspLI GGNNCC 1 cut(s) 171
BspT107I GGYRCC 1 cut(s) 169
BssECI CCNNGG 1 cut(s) 222
Bst2UI CCWGG 1 cut(s) 223
BstDEI CTNAG 2 cut(s) 86, 266
BstF5I GGATG 1 cut(s) 189
BstFNI CGCG 2 cut(s) 120, 201
BstHHI GCGC 2 cut(s) 201, 231
BstNI CCWGG 1 cut(s) 223
BstSCI CCNGG 1 cut(s) 221
BstUI CGCG 2 cut(s) 120, 201
BstV2I GAAGAC 1 cut(s) 146
BtsCI GGATG 1 cut(s) 189
BtuMI TCGCGA 1 cut(s) 120
CfoI GCGC 2 cut(s) 201, 231
Csp6I GTAC 1 cut(s) 206
CspCI CAANNNNNGTGG 2 cut(s) 147, 182
CviAII CATG 3 cut(s) 163, 240, 288
CviJI RGCY 2 cut(s) 180, 258
CviKI_1 RGCY 2 cut(s) 180, 258
CviQI GTAC 1 cut(s) 206
DdeI CTNAG 2 cut(s) 86, 266
EcoRII CCWGG 1 cut(s) 221
FaeI CATG 3 cut(s) 166, 243, 291
FaiI YATR 8 cut(s) 11, 63, 164, 234, 236, 241, 245, 289
FatI CATG 3 cut(s) 162, 239, 287
FokI GGATG 1 cut(s) 196
GlaI GCGC 2 cut(s) 200, 230
HhaI GCGC 2 cut(s) 201, 231
Hin1II CATG 3 cut(s) 166, 243, 291
Hin6I GCGC 2 cut(s) 199, 229
HinP1I GCGC 2 cut(s) 199, 229
HinfI GANTC 2 cut(s) 129, 155
HphI GGTGA 1 cut(s) 199
Hpy166II GTNNAC 2 cut(s) 249, 272
Hpy188I TCNGA 1 cut(s) 104
Hpy188III TCNNGA 1 cut(s) 119
Hpy8I GTNNAC 2 cut(s) 249, 272
HpyAV CCTTC 2 cut(s) 183, 269
HpyCH4V TGCA 1 cut(s) 287
HpyF3I CTNAG 2 cut(s) 86, 266
Hsp92II CATG 3 cut(s) 166, 243, 291
HspAI GCGC 2 cut(s) 199, 229
LpnPI CCDG 5 cut(s) 57, 98, 166, 208, 235
LweI GCATC 1 cut(s) 84
MboII GAAGA 1 cut(s) 151
MhlI GDGCHC 1 cut(s) 92
MluCI AATT 1 cut(s) 23
MlyI GAGTC 1 cut(s) 149
MnlI CCTC 2 cut(s) 196, 273
MseI TTAA 1 cut(s) 113
MslI CAYNNNNRTG 1 cut(s) 167
MspR9I CCNGG 1 cut(s) 223
MvaI CCWGG 1 cut(s) 223
MvnI CGCG 2 cut(s) 120, 201
NlaIII CATG 3 cut(s) 166, 243, 291
NlaIV GGNNCC 1 cut(s) 171
NruI TCGCGA 1 cut(s) 120
PfeI GAWTC 1 cut(s) 129
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
Psp6I CCWGG 1 cut(s) 221
PspGI CCWGG 1 cut(s) 221
PspN4I GGNNCC 1 cut(s) 171
RruI TCGCGA 1 cut(s) 120
RsaI GTAC 1 cut(s) 207
RsaNI GTAC 1 cut(s) 206
RseI CAYNNNNRTG 1 cut(s) 167
SaqAI TTAA 1 cut(s) 113
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 1 cut(s) 223
SduI GDGCHC 1 cut(s) 92
SetI ASST 3 cut(s) 87, 182, 207
SfaNI GCATC 1 cut(s) 84
SmiMI CAYNNNNRTG 1 cut(s) 167
Sse9I AATT 1 cut(s) 23
StyD4I CCNGG 1 cut(s) 221
TaqI TCGA 1 cut(s) 137
TasI AATT 1 cut(s) 23
TfiI GAWTC 1 cut(s) 129
Tru1I TTAA 1 cut(s) 113
Tru9I TTAA 1 cut(s) 113
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.