Rmu_sc0005524.1_g000004

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005524.1
OG0000270
Physical Location & Seq
Forward (+)
12481 .. 14793
2313 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005524.1_g000004.1.cds

Sequence Viewer

Length: 1155 bp
atgtctcaccagaaagtttccgccgccgtgcctagtggtgttgctaccacaggaaggcaaaaaataggtactactagtacatatcagtctgtctttaaaaaagccaagagatcatcagactctgtaactaattcaccaccgtcattggaaaccacgattgatgatctccctgactttgtactggtcgaaatcctttgtcgacttctttacaatgttaagcttgtttttcaatgcaagtgtgtgtctaggcgctgctccgccattgtctgcaatccactcactaagcaatgggttgctcttccccctgtccctcaagtcttcaagttgaaagtaccagtggggttcatttgtgaaccctactgtgatcatggaagagaagagcaaaatagtgccagaagtagtagtagtagctctatcatgaagcttaacaccggctataggtgcagggttgtgcgaatactcccaaatagaatatgtcatccagaactgggtttctatgtgcagatcttctcttctgagacaggtgaatggagggagtatcggttgcctaatctaataaaaaagttcggttggttcattgcttggcggcctggcgttgcttgcaatggcaagttatattggtacaatgacggtggctttacttttgagttggattcgttcaatattagtactagcggttttccttccggtgctattatcgacagttgtcgtttcactaaaacgcccagaaagtgcttccatctaggtgtgtgccaagggcgtttgcggatgtaccctttttccataatggaaactgttagtatttgggaactgaaagaaaattctggcaacttggaatggtgtttgatatttgacagaattcctatgttggatatggtttccaaagatcctaagatcactaaagaaaaatcgggcaaattggacgtgctaggtttccacccaagcaatgaggatgtcgtgtatttgaaatttcctgaacatataatcatgtgcaatcttcgcaaaaagacgttagagaagagtccagttgatccccatacaaacattcaatttgatttcagttgcaatattgatgaagagacgttttcgatcatttggtcgccgtacaaatattcatccatatgtgctcccatggtggcctacaccagttcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

384

Amino Acids

43.66

Weight (kDa)

8.87

Isoelectric Point (pI)

44.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 199
AciI CCGC 6 cut(s) 21, 24, 258, 586, 675, 766
AclWI GGATC 2 cut(s) 881, 1025
AcsI RAATTY 3 cut(s) 820, 858, 968
AfaI GTAC 8 cut(s) 70, 79, 180, 333, 623, 670, 773, 1106
AfiI CCNNNNNNNGG 3 cut(s) 54, 438, 488
AgsI TTSAA 6 cut(s) 230, 322, 328, 661, 967, 1049
AhlI ACTAGT 1 cut(s) 74
AjiI CACGTC 1 cut(s) 925
AjnI CCWGG 1 cut(s) 589
AluBI AGCT 3 cut(s) 220, 411, 424
AluI AGCT 3 cut(s) 220, 411, 424
Alw21I GWGCWC 1 cut(s) 1129
Alw26I GTCTC 3 cut(s) 9, 512, 1073
AlwI GGATC 2 cut(s) 881, 1025
AlwNI CAGNNNCTG 1 cut(s) 122
AoxI GGCC 2 cut(s) 587, 1137
ApeKI GCWGC 1 cut(s) 252
ApoI RAATTY 3 cut(s) 820, 858, 968
AspLEI GCGC 1 cut(s) 252
AsuHPI GGTGA 2 cut(s) 126, 536
BbsI GAAGAC 1 cut(s) 310
Bbv12I GWGCWC 1 cut(s) 1129
BbvI GCAGC 1 cut(s) 239
BccI CCATC 1 cut(s) 747
BceAI ACGGC 2 cut(s) 11, 1087
BciT130I CCWGG 1 cut(s) 591
BclI TGATCA 1 cut(s) 364
BcoDI GTCTC 3 cut(s) 9, 512, 1073
BcuI ACTAGT 1 cut(s) 74
BfaI CTAG 7 cut(s) 33, 75, 246, 672, 743, 929, 1153
BfmI CTRYAG 1 cut(s) 436
BfoI RGCGCY 1 cut(s) 253
BglII AGATCT 1 cut(s) 504
BisI GCNGC 3 cut(s) 24, 253, 587
BlsI GCNGC 3 cut(s) 25, 254, 588
BmcAI AGTACT 1 cut(s) 670
Bme1390I CCNGG 1 cut(s) 591
BmgBI CACGTC 1 cut(s) 925
BmrFI CCNGG 1 cut(s) 591
BmrI ACTGGG 1 cut(s) 497
BmuI ACTGGG 1 cut(s) 497
BoxI GACNNNNGTC 1 cut(s) 705
BpiI GAAGAC 1 cut(s) 310
BpuEI CTTGAG 1 cut(s) 297
BsaJI CCNNGG 2 cut(s) 754, 1131
BsaWI WCCGGW 1 cut(s) 686
BsaXI ACNNNNNCTCC 2 cut(s) 527, 557
Bsc4I CCNNNNNNNGG 3 cut(s) 54, 438, 488
Bse118I RCCGGY 1 cut(s) 431
Bse1I ACTGG 5 cut(s) 186, 335, 492, 1025, 1146
Bse3DI GCAATG 4 cut(s) 293, 576, 610, 952
BseBI CCWGG 1 cut(s) 591
BseDI CCNNGG 2 cut(s) 754, 1131
BseGI GGATG 4 cut(s) 478, 774, 958, 1115
BseLI CCNNNNNNNGG 3 cut(s) 54, 438, 488
BseMI GCAATG 4 cut(s) 293, 576, 610, 952
BseMII CTCAG 1 cut(s) 507
BseNI ACTGG 5 cut(s) 186, 335, 492, 1025, 1146
BseXI GCAGC 1 cut(s) 239
BsgI GTGCAG 2 cut(s) 463, 521
BshFI GGCC 2 cut(s) 589, 1139
BsiHKAI GWGCWC 1 cut(s) 1129
BsiSI CCGG 2 cut(s) 432, 687
BslFI GGGAC 1 cut(s) 293
BslI CCNNNNNNNGG 3 cut(s) 54, 438, 488
BsmAI GTCTC 3 cut(s) 9, 512, 1073
BsmBI CGTCTC 1 cut(s) 1073
BsmFI GGGAC 1 cut(s) 293
BsnI GGCC 2 cut(s) 589, 1139
Bsp1286I GDGCHC 1 cut(s) 1129
Bsp143I GATC 8 cut(s) 110, 163, 364, 504, 886, 894, 1030, 1089
Bsp19I CCATGG 1 cut(s) 1131
BspACI CCGC 6 cut(s) 21, 24, 258, 586, 675, 766
BspANI GGCC 2 cut(s) 589, 1139
BspCNI CTCAG 1 cut(s) 508
BspHI TCATGA 1 cut(s) 417
BspPI GGATC 2 cut(s) 881, 1025
BspQI GCTCTTC 2 cut(s) 303, 372
BsrDI GCAATG 4 cut(s) 293, 576, 610, 952
BsrFI RCCGGY 1 cut(s) 431
BsrI ACTGG 5 cut(s) 186, 335, 492, 1025, 1146
BssAI RCCGGY 1 cut(s) 431
BssECI CCNNGG 2 cut(s) 754, 1131
BssMI GATC 8 cut(s) 110, 163, 364, 504, 886, 894, 1030, 1089
BssT1I CCWWGG 2 cut(s) 754, 1131
Bst2UI CCWGG 1 cut(s) 591
Bst4CI ACNGT 5 cut(s) 141, 362, 632, 704, 796
Bst6I CTCTTC 6 cut(s) 303, 367, 372, 517, 1013, 1071
BstC8I GCNNGC 1 cut(s) 601
BstDEI CTNAG 3 cut(s) 282, 516, 891
BstDSI CCRYGG 1 cut(s) 1131
BstF5I GGATG 4 cut(s) 478, 774, 958, 1115
BstH2I RGCGCY 1 cut(s) 253
BstHHI GCGC 1 cut(s) 252
BstKTI GATC 8 cut(s) 113, 166, 367, 507, 889, 897, 1033, 1092
BstMAI GTCTC 3 cut(s) 9, 512, 1073
BstMBI GATC 8 cut(s) 110, 163, 364, 504, 886, 894, 1030, 1089
BstMWI GCNNNNNNNGC 3 cut(s) 441, 600, 999
BstNI CCWGG 1 cut(s) 591
BstPAI GACNNNNGTC 1 cut(s) 705
BstSCI CCNGG 1 cut(s) 589
BstSFI CTRYAG 1 cut(s) 436
BstV1I GCAGC 1 cut(s) 239
BstV2I GAAGAC 1 cut(s) 310
BstX2I RGATCY 2 cut(s) 504, 886
BstYI RGATCY 2 cut(s) 504, 886
BsuRI GGCC 2 cut(s) 589, 1139
BtgI CCRYGG 1 cut(s) 1131
BtrI CACGTC 1 cut(s) 925
BtsCI GGATG 4 cut(s) 478, 774, 958, 1115
BtsIMutI CAGTG 1 cut(s) 342
Cac8I GCNNGC 1 cut(s) 601
CaiI CAGNNNCTG 1 cut(s) 122
CciI TCATGA 1 cut(s) 417
CfoI GCGC 1 cut(s) 252
Cfr10I RCCGGY 1 cut(s) 431
Csp6I GTAC 8 cut(s) 69, 78, 179, 332, 622, 669, 772, 1105
CspCI CAANNNNNGTGG 4 cut(s) 126, 161, 613, 648
CviAII CATG 4 cut(s) 368, 418, 988, 1132
CviJI RGCY 8 cut(s) 104, 220, 411, 424, 435, 589, 636, 1139
CviKI_1 RGCY 8 cut(s) 104, 220, 411, 424, 435, 589, 636, 1139
CviQI GTAC 8 cut(s) 69, 78, 179, 332, 622, 669, 772, 1105
DdeI CTNAG 3 cut(s) 282, 516, 891
DpnI GATC 8 cut(s) 112, 165, 366, 506, 888, 896, 1032, 1091
DpnII GATC 8 cut(s) 110, 163, 364, 504, 886, 894, 1030, 1089
DraI TTTAAA 1 cut(s) 97
Eam1104I CTCTTC 6 cut(s) 303, 367, 372, 517, 1013, 1071
EarI CTCTTC 6 cut(s) 303, 367, 372, 517, 1013, 1071
EciI GGCGGA 2 cut(s) 10, 247
Eco130I CCWWGG 2 cut(s) 754, 1131
EcoRI GAATTC 1 cut(s) 858
EcoRII CCWGG 1 cut(s) 589
EcoT14I CCWWGG 2 cut(s) 754, 1131
ErhI CCWWGG 2 cut(s) 754, 1131
Esp3I CGTCTC 1 cut(s) 1073
FaeI CATG 4 cut(s) 371, 421, 991, 1135
FaqI GGGAC 1 cut(s) 293
FatI CATG 4 cut(s) 367, 417, 987, 1131
FauNDI CATATG 1 cut(s) 1121
FbaI TGATCA 1 cut(s) 364
FblI GTMKAC 1 cut(s) 199
Fnu4HI GCNGC 3 cut(s) 24, 253, 587
FokI GGATG 4 cut(s) 465, 781, 965, 1102
Fsp4HI GCNGC 3 cut(s) 24, 253, 587
FspBI CTAG 7 cut(s) 33, 75, 246, 672, 743, 929, 1153
GlaI GCGC 1 cut(s) 251
GluI GCNGC 3 cut(s) 24, 253, 587
HaeII RGCGCY 1 cut(s) 253
HaeIII GGCC 2 cut(s) 589, 1139
HapII CCGG 2 cut(s) 432, 687
HhaI GCGC 1 cut(s) 252
Hin1II CATG 4 cut(s) 371, 421, 991, 1135
Hin6I GCGC 1 cut(s) 250
HinP1I GCGC 1 cut(s) 250
HincII GTYRAC 1 cut(s) 200
HindII GTYRAC 1 cut(s) 200
HindIII AAGCTT 2 cut(s) 218, 422
HinfI GANTC 3 cut(s) 119, 653, 1021
HpaII CCGG 2 cut(s) 432, 687
HphI GGTGA 2 cut(s) 126, 536
Hpy166II GTNNAC 2 cut(s) 200, 353
Hpy188I TCNGA 2 cut(s) 118, 517
Hpy188III TCNNGA 3 cut(s) 418, 482, 974
Hpy8I GTNNAC 2 cut(s) 200, 353
HpyAV CCTTC 2 cut(s) 48, 693
HpyCH4III ACNGT 5 cut(s) 141, 362, 632, 704, 796
HpyCH4IV ACGT 3 cut(s) 924, 1010, 1082
HpyCH4V TGCA 7 cut(s) 234, 270, 444, 502, 603, 993, 1065
HpyF10VI GCNNNNNNNGC 3 cut(s) 441, 600, 999
HpyF3I CTNAG 3 cut(s) 282, 516, 891
HpySE526I ACGT 3 cut(s) 924, 1010, 1082
Hsp92II CATG 4 cut(s) 371, 421, 991, 1135
HspAI GCGC 1 cut(s) 250
Ksp22I TGATCA 1 cut(s) 364
Kzo9I GATC 8 cut(s) 110, 163, 364, 504, 886, 894, 1030, 1089
LguI GCTCTTC 2 cut(s) 303, 372
LmnI GCTCC 2 cut(s) 260, 1132
Lsp1109I GCAGC 1 cut(s) 239
MaeI CTAG 7 cut(s) 33, 75, 246, 672, 743, 929, 1153
MaeII ACGT 3 cut(s) 924, 1010, 1082
MaeIII GTNAC 1 cut(s) 124
MalI GATC 8 cut(s) 112, 165, 366, 506, 888, 896, 1032, 1091
MboI GATC 8 cut(s) 110, 163, 364, 504, 886, 894, 1030, 1089
MboII GAAGA 9 cut(s) 290, 310, 384, 389, 499, 504, 989, 1030, 1088
MflI RGATCY 2 cut(s) 504, 886
MhlI GDGCHC 1 cut(s) 1129
MluCI AATT 6 cut(s) 130, 820, 858, 917, 968, 1049
MlyI GAGTC 2 cut(s) 113, 1030
MmeI TCCRAC 2 cut(s) 630, 849
MnlI CCTC 3 cut(s) 321, 525, 943
MseI TTAA 3 cut(s) 96, 216, 426
MslI CAYNNNNRTG 2 cut(s) 744, 1120
MspI CCGG 2 cut(s) 432, 687
MspR9I CCNGG 1 cut(s) 591
MvaI CCWGG 1 cut(s) 591
MwoI GCNNNNNNNGC 3 cut(s) 441, 600, 999
NcoI CCATGG 1 cut(s) 1131
NdeI CATATG 1 cut(s) 1121
NdeII GATC 8 cut(s) 110, 163, 364, 504, 886, 894, 1030, 1089
NlaIII CATG 4 cut(s) 371, 421, 991, 1135
PagI TCATGA 1 cut(s) 417
PciSI GCTCTTC 2 cut(s) 303, 372
PfeI GAWTC 1 cut(s) 653
PkrI GCNGC 3 cut(s) 25, 254, 588
PleI GAGTC 2 cut(s) 113, 1029
PpsI GAGTC 2 cut(s) 113, 1029
PshAI GACNNNNGTC 1 cut(s) 705
Psp6I CCWGG 1 cut(s) 589
PspGI CCWGG 1 cut(s) 589
PstNI CAGNNNCTG 1 cut(s) 122
PsuI RGATCY 2 cut(s) 504, 886
RsaI GTAC 8 cut(s) 70, 79, 180, 333, 623, 670, 773, 1106
RsaNI GTAC 8 cut(s) 69, 78, 179, 332, 622, 669, 772, 1105
RseI CAYNNNNRTG 2 cut(s) 744, 1120
SalI GTCGAC 1 cut(s) 198
SapI GCTCTTC 2 cut(s) 303, 372
SaqAI TTAA 3 cut(s) 96, 216, 426
SatI GCNGC 3 cut(s) 24, 253, 587
Sau3AI GATC 8 cut(s) 110, 163, 364, 504, 886, 894, 1030, 1089
ScaI AGTACT 1 cut(s) 670
SchI GAGTC 2 cut(s) 113, 1030
ScrFI CCNGG 1 cut(s) 591
SduI GDGCHC 1 cut(s) 1129
SfcI CTRYAG 1 cut(s) 436
SmiMI CAYNNNNRTG 2 cut(s) 744, 1120
SmlI CTYRAG 1 cut(s) 312
SmoI CTYRAG 1 cut(s) 312
SpeI ACTAGT 1 cut(s) 74
Sse9I AATT 6 cut(s) 130, 820, 858, 917, 968, 1049
SsiI CCGC 6 cut(s) 21, 24, 258, 586, 675, 766
SspI AATATT 3 cut(s) 664, 1069, 1112
SspMI CTAG 7 cut(s) 33, 75, 246, 672, 743, 929, 1153
StyD4I CCNGG 1 cut(s) 589
StyI CCWWGG 2 cut(s) 754, 1131
TaaI ACNGT 5 cut(s) 141, 362, 632, 704, 796
TaiI ACGT 3 cut(s) 927, 1013, 1085
TaqI TCGA 4 cut(s) 186, 199, 699, 1088
TasI AATT 6 cut(s) 130, 820, 858, 917, 968, 1049
TatI WGTACW 3 cut(s) 77, 178, 668
TauI GCSGC 2 cut(s) 26, 589
TfiI GAWTC 1 cut(s) 653
Tru1I TTAA 3 cut(s) 96, 216, 426
Tru9I TTAA 3 cut(s) 96, 216, 426
TscAI CASTG 1 cut(s) 342
TseI GCWGC 1 cut(s) 252
TspDTI ATGAA 5 cut(s) 334, 434, 565, 1089, 1104
TspRI CASTG 1 cut(s) 342
XapI RAATTY 3 cut(s) 820, 858, 968
XmiI GTMKAC 1 cut(s) 199
XspI CTAG 7 cut(s) 33, 75, 246, 672, 743, 929, 1153
ZrmI AGTACT 1 cut(s) 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.