Rorug02G0623900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000270
Physical Location & Seq
Reverse (-)
73992349 .. 73992939
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0623900.1

Sequence Viewer

Length: 591 bp
ATGAACACAATTTCATCTTCATTTGTAGGGCTGGTCTTGTCTGCCAACTTCACAGGAGCTTACTTGGTAACTATGGAGAATTTCTTAGATTTAGATCCCAAAAGGATTCCTGATAATGCTGCAGTCAGTCAGTTTTCAGCGGCTTTGGCCAGAGCTTGGACTGAATACAACAACCCTAGGGCTGCAGTTCTATTTGTCGTTCAGGCTGAAGAACACAACATGTATGACCAACAATGGCTCTCTACTTCATTGAAGGAAAAATATAACATATCAACTCTTCGAAAAACTTTGGCTGAAATTGACGCCGAGGCGGAGTTTCTACCAGATGGAACATTTGTTGTTGGCGGCCAAGTAATTGGAATAGTTTATTTCAGAGCTGGGTATACCCCAAATGGTTATCCTTCTGAATCAGAGTGGAAATCTAGGTTACTTATGGAGCAATCACCCGCCATCAAGTGTCCATCAATATCTTATCATCTAGCTAGAACAAAAAAAGTTCAACAAGAACTTGCTAAGCCTAATGTTCTCGAGAGGTTCCTTGATGATAAAGAAGACATTGCAAAATTGCGGAAATGCTTTGCAGGATTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

196

Amino Acids

22.01

Weight (kDa)

5.77

Isoelectric Point (pI)

32.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GSH_synth_ATP PF03917 1 - 196 2.5e-20 Eukaryotic glutathione synthase, ATP binding domain
GSH_synthase PF03199 62 - 161 4.9e-32 Eukaryotic glutathione synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 156
AccI GTMKAC 1 cut(s) 383
AciI CCGC 5 cut(s) 140, 311, 345, 447, 568
AclWI GGATC 1 cut(s) 89
AcoI YGGCCR 2 cut(s) 147, 346
AcsI RAATTY 1 cut(s) 79
AcuI CTGAAG 1 cut(s) 228
AcyI GRCGYC 1 cut(s) 303
AfiI CCNNNNNNNGG 1 cut(s) 156
AflIII ACRYGT 1 cut(s) 219
AgsI TTSAA 2 cut(s) 253, 500
AluBI AGCT 4 cut(s) 59, 155, 377, 482
AluI AGCT 4 cut(s) 59, 155, 377, 482
AlwI GGATC 1 cut(s) 89
Ama87I CYCGRG 1 cut(s) 527
AoxI GGCC 2 cut(s) 147, 346
ApeKI GCWGC 2 cut(s) 119, 182
ApoI RAATTY 1 cut(s) 79
AspA2I CCTAGG 1 cut(s) 176
AsuHPI GGTGA 1 cut(s) 435
AsuII TTCGAA 1 cut(s) 280
AvaI CYCGRG 1 cut(s) 527
AvrII CCTAGG 1 cut(s) 176
BalI TGGCCA 1 cut(s) 149
BbsI GAAGAC 1 cut(s) 558
BbvI GCAGC 2 cut(s) 106, 169
BccI CCATC 3 cut(s) 320, 458, 469
BfaI CTAG 4 cut(s) 177, 423, 479, 483
BfmI CTRYAG 2 cut(s) 120, 183
BisI GCNGC 4 cut(s) 120, 141, 183, 346
BlnI CCTAGG 1 cut(s) 176
BlpI GCTNAGC 1 cut(s) 513
BlsI GCNGC 4 cut(s) 121, 142, 184, 347
BmeT110I CYCGRG 1 cut(s) 527
BmiI GGNNCC 1 cut(s) 536
BpiI GAAGAC 1 cut(s) 558
Bpu1102I GCTNAGC 1 cut(s) 513
Bpu14I TTCGAA 1 cut(s) 280
BsaBI GATNNNNATC 1 cut(s) 93
BsaHI GRCGYC 1 cut(s) 303
BsaJI CCNNGG 2 cut(s) 176, 306
Bsc4I CCNNNNNNNGG 1 cut(s) 156
Bse3DI GCAATG 1 cut(s) 555
Bse8I GATNNNNATC 1 cut(s) 93
BseDI CCNNGG 2 cut(s) 176, 306
BseJI GATNNNNATC 1 cut(s) 93
BseLI CCNNNNNNNGG 1 cut(s) 156
BseMI GCAATG 1 cut(s) 555
BseXI GCAGC 2 cut(s) 106, 169
BseYI CCCAGC 1 cut(s) 377
BshFI GGCC 2 cut(s) 149, 348
BsiHKCI CYCGRG 1 cut(s) 527
BslI CCNNNNNNNGG 1 cut(s) 156
BsnI GGCC 2 cut(s) 149, 348
BsoBI CYCGRG 1 cut(s) 527
Bsp119I TTCGAA 1 cut(s) 280
Bsp143I GATC 1 cut(s) 94
Bsp1720I GCTNAGC 1 cut(s) 513
BspACI CCGC 5 cut(s) 140, 311, 345, 447, 568
BspANI GGCC 2 cut(s) 149, 348
BspLI GGNNCC 1 cut(s) 536
BspMAI CTGCAG 2 cut(s) 124, 187
BspPI GGATC 1 cut(s) 89
BspT104I TTCGAA 1 cut(s) 280
BsrDI GCAATG 1 cut(s) 555
BssECI CCNNGG 2 cut(s) 176, 306
BssMI GATC 1 cut(s) 94
BssNAI GTATAC 1 cut(s) 384
BssNI GRCGYC 1 cut(s) 303
BssT1I CCWWGG 1 cut(s) 176
Bst1107I GTATAC 1 cut(s) 384
Bst6I CTCTTC 1 cut(s) 282
BstACI GRCGYC 1 cut(s) 303
BstBI TTCGAA 1 cut(s) 280
BstDEI CTNAG 2 cut(s) 85, 513
BstKTI GATC 1 cut(s) 97
BstMBI GATC 1 cut(s) 94
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstNSI RCATGY 1 cut(s) 223
BstSFI CTRYAG 2 cut(s) 120, 183
BstV1I GCAGC 2 cut(s) 106, 169
BstV2I GAAGAC 1 cut(s) 558
BstX2I RGATCY 1 cut(s) 94
BstXI CCANNNNNNTGG 1 cut(s) 356
BstYI RGATCY 1 cut(s) 94
BstZ17I GTATAC 1 cut(s) 384
BsuRI GGCC 2 cut(s) 149, 348
CseI GACGC 1 cut(s) 311
CviAII CATG 1 cut(s) 220
DdeI CTNAG 2 cut(s) 85, 513
DpnI GATC 1 cut(s) 96
DpnII GATC 1 cut(s) 94
EaeI YGGCCR 2 cut(s) 147, 346
Eam1104I CTCTTC 1 cut(s) 282
EarI CTCTTC 1 cut(s) 282
EciI GGCGGA 1 cut(s) 326
Eco130I CCWWGG 1 cut(s) 176
Eco57I CTGAAG 1 cut(s) 228
Eco88I CYCGRG 1 cut(s) 527
EcoT14I CCWWGG 1 cut(s) 176
ErhI CCWWGG 1 cut(s) 176
FaeI CATG 1 cut(s) 223
FaiI YATR 7 cut(s) 74, 221, 225, 264, 269, 384, 434
FatI CATG 1 cut(s) 219
FauI CCCGC 1 cut(s) 454
FblI GTMKAC 1 cut(s) 383
Fnu4HI GCNGC 4 cut(s) 120, 141, 183, 346
Fsp4HI GCNGC 4 cut(s) 120, 141, 183, 346
FspBI CTAG 4 cut(s) 177, 423, 479, 483
GluI GCNGC 4 cut(s) 120, 141, 183, 346
GsaI CCCAGC 1 cut(s) 381
HaeIII GGCC 2 cut(s) 149, 348
HgaI GACGC 1 cut(s) 311
Hin1I GRCGYC 1 cut(s) 303
Hin1II CATG 1 cut(s) 223
HinfI GANTC 2 cut(s) 106, 407
HphI GGTGA 1 cut(s) 435
Hpy166II GTNNAC 1 cut(s) 384
Hpy188I TCNGA 3 cut(s) 374, 406, 412
Hpy188III TCNNGA 3 cut(s) 110, 527, 529
Hpy8I GTNNAC 1 cut(s) 384
HpyAV CCTTC 2 cut(s) 247, 411
HpyCH4V TGCA 4 cut(s) 122, 185, 560, 581
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
HpyF3I CTNAG 2 cut(s) 85, 513
Hsp92I GRCGYC 1 cut(s) 303
Hsp92II CATG 1 cut(s) 223
Kzo9I GATC 1 cut(s) 94
LmnI GCTCC 2 cut(s) 56, 436
LpnPI CCDG 8 cut(s) 17, 39, 123, 163, 188, 336, 363, 567
Lsp1109I GCAGC 2 cut(s) 106, 169
MaeI CTAG 4 cut(s) 177, 423, 479, 483
MaeIII GTNAC 2 cut(s) 67, 426
MalI GATC 1 cut(s) 96
MboI GATC 1 cut(s) 94
MboII GAAGA 4 cut(s) 9, 221, 269, 563
MflI RGATCY 1 cut(s) 94
MlsI TGGCCA 1 cut(s) 149
MluCI AATT 5 cut(s) 9, 79, 297, 354, 563
MluNI TGGCCA 1 cut(s) 149
MnlI CCTC 2 cut(s) 301, 525
Mox20I TGGCCA 1 cut(s) 149
MscI TGGCCA 1 cut(s) 149
Msp20I TGGCCA 1 cut(s) 149
MspA1I CMGCKG 1 cut(s) 140
MwoI GCNNNNNNNGC 1 cut(s) 146
NdeII GATC 1 cut(s) 94
NlaIII CATG 1 cut(s) 223
NlaIV GGNNCC 1 cut(s) 536
NmeAIII GCCGAG 1 cut(s) 331
NspI RCATGY 1 cut(s) 223
NspV TTCGAA 1 cut(s) 280
PaeR7I CTCGAG 1 cut(s) 527
PciI ACATGT 1 cut(s) 219
PfeI GAWTC 2 cut(s) 106, 407
PflMI CCANNNNNTGG 1 cut(s) 156
PkrI GCNGC 4 cut(s) 121, 142, 184, 347
PscI ACATGT 1 cut(s) 219
PspFI CCCAGC 1 cut(s) 377
PspN4I GGNNCC 1 cut(s) 536
PstI CTGCAG 2 cut(s) 124, 187
PsuI RGATCY 1 cut(s) 94
SatI GCNGC 4 cut(s) 120, 141, 183, 346
Sau3AI GATC 1 cut(s) 94
SetI ASST 6 cut(s) 61, 157, 379, 428, 484, 536
SfcI CTRYAG 2 cut(s) 120, 183
Sfr274I CTCGAG 1 cut(s) 527
SfuI TTCGAA 1 cut(s) 280
SlaI CTCGAG 1 cut(s) 527
SmlI CTYRAG 1 cut(s) 527
SmoI CTYRAG 1 cut(s) 527
Sse9I AATT 5 cut(s) 9, 79, 297, 354, 563
SsiI CCGC 5 cut(s) 140, 311, 345, 447, 568
SspMI CTAG 4 cut(s) 177, 423, 479, 483
StyI CCWWGG 1 cut(s) 176
TaqI TCGA 2 cut(s) 280, 528
TasI AATT 5 cut(s) 9, 79, 297, 354, 563
TauI GCSGC 2 cut(s) 143, 348
TfiI GAWTC 2 cut(s) 106, 407
TseI GCWGC 2 cut(s) 119, 182
TspDTI ATGAA 3 cut(s) 9, 17, 237
Van91I CCANNNNNTGG 1 cut(s) 156
XapI RAATTY 1 cut(s) 79
XceI RCATGY 1 cut(s) 223
XhoI CTCGAG 1 cut(s) 527
XmaJI CCTAGG 1 cut(s) 176
XmiI GTMKAC 1 cut(s) 383
XspI CTAG 4 cut(s) 177, 423, 479, 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.