RLG00000025778

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000270
Physical Location & Seq
Reverse (-)
48222382 .. 48223736
1355 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025778

Sequence Viewer

Length: 1008 bp
ATGACTTGGTCTTGTGCTGCGCAACCGAGCATTATCAACGTGACTACTACATCTGCAATCCACTCACCAAGCAATGGGTTGCTCTCCCTCCCACCCCTCGAGCTCCCTATTCGAAAGTGCAGGTGCAGGGTTGTGCGAATCCTCCCAGATGAAAGATTTCAACCAGGACTGGGTTTTTATGTGGAGATCTTCTCTTCTGAGACAGGTGAATGGAGAGAGTATCAATTACCTAATCTAACAGAGTTAGAAAAGTTCGGTTGGTTCATTAAATGGCAGCCTGGCGTTGCTTTCAATGGCAAGTTATATTGGTACAATGATGGTGGCTTTACTTTTGAGTTGGATCCGTTCAATATTAGCAGTGGTGGTGATATTATTAATAACAAGCGTCGTTTCAATGTAGAACCGAGACGATGCTTCCATTTATGTGTGTGCCAAGGGCGTTTGCGAATGTATCCATTCTCTATAGCGGGATATATTAGCATTTGGGAATTGAATGAAAAATCCGGCAAATCGGAATGGTGCTTGATATTTGACAAAGTTTCTCTGTTGGATATGGTTTCCAAAGATCCTACGATCACTAAAGAAAAATCACGCAAATTGGACGTGTTAGGTTTCCTTCCAAGCAATGAAGATATCATATATTTGAAATTTCCTGAACAGATAGCAATGTGCAATCTTCGTGAAAACACTTTAGAGAAGAGTCCAGTTGATCCACCTATAAACATTCGATTTGGTTTCAGTTGCTATGTTAGTCAGTTTGCAGTTGATCGCTGTACAATCATCTATCCATATGTGCACCCGTGGTGGCCTACACCAGTTCCTAGAATCAATAAACCAAAGGTTTGCCAGGTCAAGGTCTTGAAACAATTTGAGATATTCCTGGTGCAGCATGCTGCGCAGCAGGAGTCACAAATTCAACAGCATCAGGCATCACAGTTTCCGGCATCAACCAAGCGTCGTTCATTTGATACAACAACTTCTGTTCAAAATGACTTTTTTGGAGGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

336

Amino Acids

38.69

Weight (kDa)

8.57

Isoelectric Point (pI)

48.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 111
Acc16I TGCGCA 2 cut(s) 21, 897
Acc36I ACCTGC 1 cut(s) 111
AccB7I CCANNNNNTGG 1 cut(s) 74
AciI CCGC 1 cut(s) 467
AclWI GGATC 4 cut(s) 335, 348, 560, 704
AcsI RAATTY 2 cut(s) 647, 912
AfaI GTAC 2 cut(s) 311, 775
AfiI CCNNNNNNNGG 3 cut(s) 74, 170, 853
AflIII ACRYGT 1 cut(s) 603
AgsI TTSAA 9 cut(s) 161, 292, 349, 394, 493, 646, 862, 917, 986
AjiI CACGTC 1 cut(s) 604
AjnI CCWGG 4 cut(s) 163, 277, 846, 879
AluBI AGCT 1 cut(s) 103
AluI AGCT 1 cut(s) 103
Alw21I GWGCWC 2 cut(s) 105, 798
Alw26I GTCTC 2 cut(s) 194, 400
Alw44I GTGCAC 1 cut(s) 794
AlwI GGATC 4 cut(s) 335, 348, 560, 704
Ama87I CYCGRG 1 cut(s) 98
AoxI GGCC 1 cut(s) 806
ApaLI GTGCAC 1 cut(s) 794
ApeKI GCWGC 5 cut(s) 17, 274, 886, 893, 898
ApoI RAATTY 2 cut(s) 647, 912
AseI ATTAAT 1 cut(s) 375
Asp700I GAANNNNTTC 1 cut(s) 156
AspLEI GCGC 2 cut(s) 22, 898
AsuHPI GGTGA 3 cut(s) 57, 218, 377
AsuII TTCGAA 1 cut(s) 112
AvaI CYCGRG 1 cut(s) 98
BaeGI GKGCMC 1 cut(s) 798
BamHI GGATCC 1 cut(s) 340
BanII GRGCYC 1 cut(s) 105
Bbv12I GWGCWC 2 cut(s) 105, 798
BbvI GCAGC 5 cut(s) 4, 286, 880, 898, 910
BccI CCATC 1 cut(s) 311
BciT130I CCWGG 4 cut(s) 165, 279, 848, 881
BciVI GTATCC 1 cut(s) 462
BcoDI GTCTC 2 cut(s) 194, 400
BfaI CTAG 1 cut(s) 822
BfmI CTRYAG 1 cut(s) 462
BfuAI ACCTGC 1 cut(s) 111
BfuI GTATCC 1 cut(s) 462
BglII AGATCT 1 cut(s) 186
BisI GCNGC 5 cut(s) 18, 275, 887, 894, 899
BlsI GCNGC 5 cut(s) 19, 276, 888, 895, 900
Bme1390I CCNGG 4 cut(s) 165, 279, 848, 881
BmeT110I CYCGRG 1 cut(s) 98
BmgBI CACGTC 1 cut(s) 604
BmiI GGNNCC 1 cut(s) 342
BmrFI CCNGG 4 cut(s) 165, 279, 848, 881
BmrI ACTGGG 1 cut(s) 179
BmsI GCATC 4 cut(s) 401, 931, 938, 953
BmuI ACTGGG 1 cut(s) 179
BplI GAGNNNNNCTC 2 cut(s) 176, 208
Bpu14I TTCGAA 1 cut(s) 112
BsaJI CCNNGG 2 cut(s) 433, 800
Bsc4I CCNNNNNNNGG 3 cut(s) 74, 170, 853
Bse1I ACTGG 3 cut(s) 174, 704, 815
Bse3DI GCAATG 3 cut(s) 79, 631, 672
BseBI CCWGG 4 cut(s) 165, 279, 848, 881
BseDI CCNNGG 2 cut(s) 433, 800
BseLI CCNNNNNNNGG 3 cut(s) 74, 170, 853
BseMI GCAATG 3 cut(s) 79, 631, 672
BseMII CTCAG 1 cut(s) 189
BseNI ACTGG 3 cut(s) 174, 704, 815
BseSI GKGCMC 1 cut(s) 798
BseXI GCAGC 5 cut(s) 4, 286, 880, 898, 910
BsgI GTGCAG 3 cut(s) 139, 145, 905
BshFI GGCC 1 cut(s) 808
BsiHKAI GWGCWC 2 cut(s) 105, 798
BsiHKCI CYCGRG 1 cut(s) 98
BsiSI CCGG 2 cut(s) 504, 941
BslI CCNNNNNNNGG 3 cut(s) 74, 170, 853
BsmAI GTCTC 2 cut(s) 194, 400
BsmBI CGTCTC 1 cut(s) 400
BsnI GGCC 1 cut(s) 808
BsoBI CYCGRG 1 cut(s) 98
Bsp119I TTCGAA 1 cut(s) 112
Bsp1286I GDGCHC 2 cut(s) 105, 798
Bsp1407I TGTACA 1 cut(s) 773
Bsp143I GATC 6 cut(s) 186, 340, 565, 573, 709, 766
BspACI CCGC 1 cut(s) 467
BspANI GGCC 1 cut(s) 808
BspCNI CTCAG 1 cut(s) 190
BspLI GGNNCC 1 cut(s) 342
BspMI ACCTGC 1 cut(s) 111
BspPI GGATC 4 cut(s) 335, 348, 560, 704
BspT104I TTCGAA 1 cut(s) 112
BsrDI GCAATG 3 cut(s) 79, 631, 672
BsrGI TGTACA 1 cut(s) 773
BsrI ACTGG 3 cut(s) 174, 704, 815
BssECI CCNNGG 2 cut(s) 433, 800
BssMI GATC 6 cut(s) 186, 340, 565, 573, 709, 766
BssT1I CCWWGG 1 cut(s) 433
Bst2UI CCWGG 4 cut(s) 165, 279, 848, 881
Bst4CI ACNGT 1 cut(s) 936
Bst6I CTCTTC 2 cut(s) 199, 692
BstAUI TGTACA 1 cut(s) 773
BstBI TTCGAA 1 cut(s) 112
BstC8I GCNNGC 1 cut(s) 891
BstDEI CTNAG 1 cut(s) 198
BstDSI CCRYGG 1 cut(s) 800
BstHHI GCGC 2 cut(s) 22, 898
BstKTI GATC 6 cut(s) 189, 343, 568, 576, 712, 769
BstMAI GTCTC 2 cut(s) 194, 400
BstMBI GATC 6 cut(s) 186, 340, 565, 573, 709, 766
BstMWI GCNNNNNNNGC 1 cut(s) 895
BstNI CCWGG 4 cut(s) 165, 279, 848, 881
BstNSI RCATGY 1 cut(s) 893
BstSCI CCNGG 4 cut(s) 163, 277, 846, 879
BstSFI CTRYAG 1 cut(s) 462
BstSLI GKGCMC 1 cut(s) 798
BstV1I GCAGC 5 cut(s) 4, 286, 880, 898, 910
BstX2I RGATCY 3 cut(s) 186, 340, 565
BstYI RGATCY 3 cut(s) 186, 340, 565
BsuI GTATCC 1 cut(s) 462
BsuRI GGCC 1 cut(s) 808
BtgI CCRYGG 1 cut(s) 800
BtrI CACGTC 1 cut(s) 604
BtsI GCAGTG 1 cut(s) 364
BtsIMutI CAGTG 1 cut(s) 364
BveI ACCTGC 1 cut(s) 111
Cac8I GCNNGC 1 cut(s) 891
CfoI GCGC 2 cut(s) 22, 898
CseI GACGC 2 cut(s) 374, 944
Csp6I GTAC 2 cut(s) 310, 774
CspCI CAANNNNNGTGG 2 cut(s) 301, 336
CviAII CATG 1 cut(s) 890
CviJI RGCY 5 cut(s) 103, 277, 324, 808, 1005
CviKI_1 RGCY 5 cut(s) 103, 277, 324, 808, 1005
CviQI GTAC 2 cut(s) 310, 774
DdeI CTNAG 1 cut(s) 198
DpnI GATC 6 cut(s) 188, 342, 567, 575, 711, 768
DpnII GATC 6 cut(s) 186, 340, 565, 573, 709, 766
Eam1104I CTCTTC 2 cut(s) 199, 692
EarI CTCTTC 2 cut(s) 199, 692
Ecl136II GAGCTC 1 cut(s) 103
Eco130I CCWWGG 1 cut(s) 433
Eco24I GRGCYC 1 cut(s) 105
Eco32I GATATC 1 cut(s) 634
Eco53kI GAGCTC 1 cut(s) 103
Eco88I CYCGRG 1 cut(s) 98
EcoICRI GAGCTC 1 cut(s) 103
EcoRII CCWGG 4 cut(s) 163, 277, 846, 879
EcoRV GATATC 1 cut(s) 634
EcoT14I CCWWGG 1 cut(s) 433
EcoT38I GRGCYC 1 cut(s) 105
ErhI CCWWGG 1 cut(s) 433
Esp3I CGTCTC 1 cut(s) 400
FaeI CATG 1 cut(s) 893
FatI CATG 1 cut(s) 889
FauI CCCGC 1 cut(s) 460
FauNDI CATATG 1 cut(s) 790
Fnu4HI GCNGC 5 cut(s) 18, 275, 887, 894, 899
FriOI GRGCYC 1 cut(s) 105
Fsp4HI GCNGC 5 cut(s) 18, 275, 887, 894, 899
FspBI CTAG 1 cut(s) 822
FspI TGCGCA 2 cut(s) 21, 897
GlaI GCGC 2 cut(s) 21, 897
GluI GCNGC 5 cut(s) 18, 275, 887, 894, 899
HaeIII GGCC 1 cut(s) 808
HapII CCGG 2 cut(s) 504, 941
HgaI GACGC 2 cut(s) 374, 944
HhaI GCGC 2 cut(s) 22, 898
Hin1II CATG 1 cut(s) 893
Hin6I GCGC 2 cut(s) 20, 896
HinP1I GCGC 2 cut(s) 20, 896
HinfI GANTC 4 cut(s) 138, 700, 825, 905
HpaII CCGG 2 cut(s) 504, 941
HphI GGTGA 3 cut(s) 57, 218, 377
Hpy166II GTNNAC 1 cut(s) 796
Hpy188I TCNGA 2 cut(s) 199, 514
Hpy188III TCNNGA 3 cut(s) 653, 680, 859
Hpy8I GTNNAC 1 cut(s) 796
Hpy99I CGWCG 2 cut(s) 390, 960
HpyAV CCTTC 1 cut(s) 626
HpyCH4III ACNGT 1 cut(s) 936
HpyCH4IV ACGT 2 cut(s) 39, 603
HpyCH4V TGCA 7 cut(s) 56, 120, 126, 672, 761, 796, 886
HpyF10VI GCNNNNNNNGC 1 cut(s) 895
HpyF3I CTNAG 1 cut(s) 198
HpySE526I ACGT 2 cut(s) 39, 603
Hsp92II CATG 1 cut(s) 893
HspAI GCGC 2 cut(s) 20, 896
Kzo9I GATC 6 cut(s) 186, 340, 565, 573, 709, 766
LmnI GCTCC 1 cut(s) 108
Lsp1109I GCAGC 5 cut(s) 4, 286, 880, 898, 910
LweI GCATC 4 cut(s) 401, 931, 938, 953
MaeI CTAG 1 cut(s) 822
MaeII ACGT 2 cut(s) 39, 603
MaeIII GTNAC 2 cut(s) 40, 906
MalI GATC 6 cut(s) 188, 342, 567, 575, 711, 768
MboI GATC 6 cut(s) 186, 340, 565, 573, 709, 766
MboII GAAGA 5 cut(s) 181, 186, 641, 668, 709
MflI RGATCY 3 cut(s) 186, 340, 565
MhlI GDGCHC 2 cut(s) 105, 798
MluCI AATT 6 cut(s) 224, 488, 596, 647, 866, 912
MlyI GAGTC 2 cut(s) 709, 914
MmeI TCCRAC 2 cut(s) 318, 528
MnlI CCTC 4 cut(s) 98, 107, 152, 995
MroXI GAANNNNTTC 1 cut(s) 156
MseI TTAA 2 cut(s) 267, 375
MslI CAYNNNNRTG 1 cut(s) 423
MspI CCGG 2 cut(s) 504, 941
MspR9I CCNGG 4 cut(s) 165, 279, 848, 881
MvaI CCWGG 4 cut(s) 165, 279, 848, 881
MwoI GCNNNNNNNGC 1 cut(s) 895
NdeI CATATG 1 cut(s) 790
NdeII GATC 6 cut(s) 186, 340, 565, 573, 709, 766
NlaIII CATG 1 cut(s) 893
NlaIV GGNNCC 1 cut(s) 342
NmuCI GTSAC 2 cut(s) 40, 906
NsbI TGCGCA 2 cut(s) 21, 897
NspI RCATGY 1 cut(s) 893
NspV TTCGAA 1 cut(s) 112
PaeI GCATGC 1 cut(s) 893
PaeR7I CTCGAG 1 cut(s) 98
PaqCI CACCTGC 1 cut(s) 111
PdmI GAANNNNTTC 1 cut(s) 156
PfeI GAWTC 2 cut(s) 138, 825
PflFI GACNNNGTC 1 cut(s) 7
PflMI CCANNNNNTGG 1 cut(s) 74
PkrI GCNGC 5 cut(s) 19, 276, 888, 895, 900
PleI GAGTC 2 cut(s) 708, 913
PpsI GAGTC 2 cut(s) 708, 913
PshBI ATTAAT 1 cut(s) 375
Psp124BI GAGCTC 1 cut(s) 105
Psp6I CCWGG 4 cut(s) 163, 277, 846, 879
PspGI CCWGG 4 cut(s) 163, 277, 846, 879
PspN4I GGNNCC 1 cut(s) 342
PspXI VCTCGAGB 1 cut(s) 98
PsuI RGATCY 3 cut(s) 186, 340, 565
PsyI GACNNNGTC 1 cut(s) 7
RsaI GTAC 2 cut(s) 311, 775
RsaNI GTAC 2 cut(s) 310, 774
RseI CAYNNNNRTG 1 cut(s) 423
SacI GAGCTC 1 cut(s) 105
SaqAI TTAA 2 cut(s) 267, 375
SatI GCNGC 5 cut(s) 18, 275, 887, 894, 899
Sau3AI GATC 6 cut(s) 186, 340, 565, 573, 709, 766
SchI GAGTC 2 cut(s) 709, 914
ScrFI CCNGG 4 cut(s) 165, 279, 848, 881
SduI GDGCHC 2 cut(s) 105, 798
SfaNI GCATC 4 cut(s) 401, 931, 938, 953
SfcI CTRYAG 1 cut(s) 462
Sfr274I CTCGAG 1 cut(s) 98
SfuI TTCGAA 1 cut(s) 112
SlaI CTCGAG 1 cut(s) 98
SmiMI CAYNNNNRTG 1 cut(s) 423
SmlI CTYRAG 1 cut(s) 98
SmoI CTYRAG 1 cut(s) 98
SphI GCATGC 1 cut(s) 893
Sse9I AATT 6 cut(s) 224, 488, 596, 647, 866, 912
SsiI CCGC 1 cut(s) 467
SspI AATATT 1 cut(s) 352
SspMI CTAG 1 cut(s) 822
SstI GAGCTC 1 cut(s) 105
StyD4I CCNGG 4 cut(s) 163, 277, 846, 879
StyI CCWWGG 1 cut(s) 433
TaaI ACNGT 1 cut(s) 936
TaiI ACGT 2 cut(s) 42, 606
TaqI TCGA 3 cut(s) 99, 112, 727
TasI AATT 6 cut(s) 224, 488, 596, 647, 866, 912
TatI WGTACW 1 cut(s) 773
TfiI GAWTC 2 cut(s) 138, 825
Tru1I TTAA 2 cut(s) 267, 375
Tru9I TTAA 2 cut(s) 267, 375
TscAI CASTG 1 cut(s) 364
TseFI GTSAC 2 cut(s) 40, 906
TseI GCWGC 5 cut(s) 17, 274, 886, 893, 898
Tsp45I GTSAC 2 cut(s) 40, 906
TspDTI ATGAA 5 cut(s) 165, 253, 510, 642, 951
TspGWI ACGGA 1 cut(s) 333
TspRI CASTG 1 cut(s) 364
Tth111I GACNNNGTC 1 cut(s) 7
Van91I CCANNNNNTGG 1 cut(s) 74
VneI GTGCAC 1 cut(s) 794
VspI ATTAAT 1 cut(s) 375
XapI RAATTY 2 cut(s) 647, 912
XceI RCATGY 1 cut(s) 893
XhoI CTCGAG 1 cut(s) 98
XmnI GAANNNNTTC 1 cut(s) 156
XspI CTAG 1 cut(s) 822
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.