Rroxscaffold_2G00097990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000270
Physical Location & Seq
Reverse (-)
19157607 .. 19158730
1124 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00097990.1

Sequence Viewer

Length: 1032 bp
ATGAGACATGTTGATGGTGGTACTGTTTTCAAAAAACCTATTGATGAGGCGACCTCTGATGCTGATGGTGTTACTCGCAAAAGAAAAAGAAAAACAATACCATCTTCATCATCGTTGTCATCGAAAAAATCAGAAAGGTCATCTATAGCATCAACATCAGAACTGAGTAATCTCCCCGAGGTTTTATTGGTTGGAATTCTATGTCGACTTTCTCTCAAATCCGTTGCTCTATGCAAGGGTGTGTCCAAGCGTTGGTTCACTCTCATCTCTTCTAATCTCCCTTATTTCATCAACTTTCAACAGCAGCATCATGATGAGCCCAACTTACATACTCTGGTCATCTGCTCTCGATTCCTTCCAATGTGTAAAACAACCCGTAGGTTGTCTCGGGATTTCAAGCTCTCTGATTATTGTTTCCAAGACTTAGGCTCTAAGAAACGACGACGTCCAGTTGTGCAATCTGTTGCTCTTCCTCCTACACCTGGACTCTACAAACATGCACGAGTGGGCTTCATTTGCGATCCCTACTATATCTACGAGAGTTCTTCTCCAGTCGTCAAGGAGCTTAATGCTGATTATAGGTGCAGGGTTGTGCGATTACTTCCAAAGTTGCGGATGGAGATATTCTCTTCTGAGACGGGTCAATGGAGCCCGACAGTTCTTGGAGATATCTATGAGCTAAAGCCAAGTATCTTCAAACAAATTGTGACTGCGGGCTTTGCTTACAATGGAAAGTTGTATTGGTGTGGTGGCCGTATATATAAGTCGCCTACATTTACTTTTGAGTTGGATCCATTCTGTACGAGTACTACCACTACTGTCAATGCCAATGGTGGTGGTGGTGATATTATTGATGTTTTTGACTCGTGTCGTTTCATCGAGGGGCCATTAGACTTGGAAGACCTGCGCGATTACTGTTTCCCAGTTTTAGGTGTGTGCCGAGGTAGTCCTCTACGGGCATGTGATTTCGAACTTTCTGGCATTGATGATCGTATAAGGATTTGGGAGTTAAGAGAGGAGGTTTGGAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

343

Amino Acids

38.9

Weight (kDa)

9.03

Isoelectric Point (pI)

51.76

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 55 - 95 1.2e-06 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 448
Acc36I ACCTGC 1 cut(s) 912
AccB7I CCANNNNNTGG 1 cut(s) 252
AccI GTMKAC 1 cut(s) 205
AccII CGCG 1 cut(s) 909
AciI CCGC 2 cut(s) 613, 713
AclWI GGATC 3 cut(s) 515, 785, 798
AcoI YGGCCR 1 cut(s) 751
AcsI RAATTY 1 cut(s) 195
AcyI GRCGYC 1 cut(s) 445
AfaI GTAC 3 cut(s) 22, 802, 808
AfiI CCNNNNNNNGG 3 cut(s) 252, 482, 929
AflIII ACRYGT 1 cut(s) 7
AgsI TTSAA 4 cut(s) 31, 299, 397, 697
AjnI CCWGG 1 cut(s) 481
AjuI GAANNNNNNNTTGG 4 cut(s) 239, 271, 724, 756
AluBI AGCT 3 cut(s) 400, 565, 679
AluI AGCT 3 cut(s) 400, 565, 679
Alw26I GTCTC 2 cut(s) 390, 629
AlwI GGATC 3 cut(s) 515, 785, 798
Ama87I CYCGRG 2 cut(s) 176, 387
AoxI GGCC 2 cut(s) 751, 884
ApeKI GCWGC 1 cut(s) 304
ApoI RAATTY 1 cut(s) 195
AspLEI GCGC 1 cut(s) 909
AspS9I GGNCC 1 cut(s) 884
AsuHPI GGTGA 1 cut(s) 854
AsuII TTCGAA 1 cut(s) 969
AvaI CYCGRG 2 cut(s) 176, 387
BamHI GGATCC 1 cut(s) 790
BanII GRGCYC 2 cut(s) 321, 653
BauI CACGAG 2 cut(s) 501, 865
BbsI GAAGAC 1 cut(s) 906
BbvI GCAGC 1 cut(s) 316
BccI CCATC 4 cut(s) 8, 59, 109, 610
BceAI ACGGC 1 cut(s) 738
BciT130I CCWGG 1 cut(s) 483
BcoDI GTCTC 2 cut(s) 390, 629
BfmI CTRYAG 1 cut(s) 144
BfuAI ACCTGC 1 cut(s) 912
BisI GCNGC 1 cut(s) 305
BlsI GCNGC 1 cut(s) 306
BmcAI AGTACT 1 cut(s) 808
Bme1390I CCNGG 1 cut(s) 483
BmeT110I CYCGRG 2 cut(s) 176, 387
BmgT120I GGNCC 1 cut(s) 884
BmiI GGNNCC 3 cut(s) 650, 792, 885
BmrFI CCNGG 1 cut(s) 483
BmrI ACTGGG 1 cut(s) 917
BmsI GCATC 3 cut(s) 49, 158, 316
BmuI ACTGGG 1 cut(s) 917
BoxI GACNNNNGTC 1 cut(s) 867
BpiI GAAGAC 1 cut(s) 906
BplI GAGNNNNNCTC 6 cut(s) 38, 70, 532, 564, 611, 643
BpmI CTGGAG 1 cut(s) 534
Bpu14I TTCGAA 1 cut(s) 969
BsaHI GRCGYC 1 cut(s) 445
BsaJI CCNNGG 2 cut(s) 177, 940
Bsc4I CCNNNNNNNGG 3 cut(s) 252, 482, 929
Bse1I ACTGG 3 cut(s) 449, 551, 923
BseBI CCWGG 1 cut(s) 483
BseDI CCNNGG 2 cut(s) 177, 940
BseGI GGATG 1 cut(s) 621
BseLI CCNNNNNNNGG 3 cut(s) 252, 482, 929
BseMII CTCAG 2 cut(s) 155, 624
BseNI ACTGG 3 cut(s) 449, 551, 923
BseRI GAGGAG 1 cut(s) 1031
BseXI GCAGC 1 cut(s) 316
BsgI GTGCAG 1 cut(s) 604
Bsh1236I CGCG 1 cut(s) 909
BshFI GGCC 2 cut(s) 753, 886
BsiHKCI CYCGRG 2 cut(s) 176, 387
BslI CCNNNNNNNGG 3 cut(s) 252, 482, 929
BsmAI GTCTC 2 cut(s) 390, 629
BsmBI CGTCTC 1 cut(s) 629
BsnI GGCC 2 cut(s) 753, 886
BsoBI CYCGRG 2 cut(s) 176, 387
Bsp119I TTCGAA 1 cut(s) 969
Bsp1286I GDGCHC 2 cut(s) 321, 653
Bsp143I GATC 3 cut(s) 520, 790, 988
BspACI CCGC 2 cut(s) 613, 713
BspANI GGCC 2 cut(s) 753, 886
BspCNI CTCAG 2 cut(s) 156, 625
BspFNI CGCG 1 cut(s) 909
BspHI TCATGA 1 cut(s) 310
BspLI GGNNCC 3 cut(s) 650, 792, 885
BspMI ACCTGC 1 cut(s) 912
BspPI GGATC 3 cut(s) 515, 785, 798
BspQI GCTCTTC 1 cut(s) 474
BspT104I TTCGAA 1 cut(s) 969
BsrI ACTGG 3 cut(s) 449, 551, 923
BssECI CCNNGG 2 cut(s) 177, 940
BssMI GATC 3 cut(s) 520, 790, 988
BssNI GRCGYC 1 cut(s) 445
BssSI CACGAG 2 cut(s) 501, 865
Bst2BI CACGAG 2 cut(s) 501, 865
Bst2UI CCWGG 1 cut(s) 483
Bst4CI ACNGT 4 cut(s) 25, 658, 820, 917
Bst6I CTCTTC 3 cut(s) 274, 474, 634
BstACI GRCGYC 1 cut(s) 445
BstBI TTCGAA 1 cut(s) 969
BstC8I GCNNGC 1 cut(s) 715
BstDEI CTNAG 4 cut(s) 164, 424, 432, 633
BstF5I GGATG 1 cut(s) 621
BstFNI CGCG 1 cut(s) 909
BstHHI GCGC 1 cut(s) 909
BstKTI GATC 3 cut(s) 523, 793, 991
BstMAI GTCTC 2 cut(s) 390, 629
BstMBI GATC 3 cut(s) 520, 790, 988
BstMWI GCNNNNNNNGC 2 cut(s) 516, 719
BstNI CCWGG 1 cut(s) 483
BstNSI RCATGY 3 cut(s) 11, 500, 963
BstPAI GACNNNNGTC 1 cut(s) 867
BstSCI CCNGG 1 cut(s) 481
BstSFI CTRYAG 1 cut(s) 144
BstUI CGCG 1 cut(s) 909
BstV1I GCAGC 1 cut(s) 316
BstV2I GAAGAC 1 cut(s) 906
BstX2I RGATCY 1 cut(s) 790
BstYI RGATCY 1 cut(s) 790
BsuRI GGCC 2 cut(s) 753, 886
BtsCI GGATG 1 cut(s) 621
BveI ACCTGC 1 cut(s) 912
Cac8I GCNNGC 1 cut(s) 715
CciI TCATGA 1 cut(s) 310
CfoI GCGC 1 cut(s) 909
Cfr13I GGNCC 1 cut(s) 884
Csp6I GTAC 3 cut(s) 21, 801, 807
CspCI CAANNNNNGTGG 2 cut(s) 817, 852
CviAII CATG 4 cut(s) 8, 311, 497, 960
CviQI GTAC 3 cut(s) 21, 801, 807
DdeI CTNAG 4 cut(s) 164, 424, 432, 633
DpnI GATC 3 cut(s) 522, 792, 990
DpnII GATC 3 cut(s) 520, 790, 988
EaeI YGGCCR 1 cut(s) 751
Eam1104I CTCTTC 3 cut(s) 274, 474, 634
EarI CTCTTC 3 cut(s) 274, 474, 634
Eco24I GRGCYC 2 cut(s) 321, 653
Eco32I GATATC 1 cut(s) 670
Eco88I CYCGRG 2 cut(s) 176, 387
EcoRI GAATTC 1 cut(s) 195
EcoRII CCWGG 1 cut(s) 481
EcoRV GATATC 1 cut(s) 670
EcoT38I GRGCYC 2 cut(s) 321, 653
Esp3I CGTCTC 1 cut(s) 629
FaeI CATG 4 cut(s) 11, 314, 500, 963
FatI CATG 4 cut(s) 7, 310, 496, 959
FauI CCCGC 1 cut(s) 706
FblI GTMKAC 1 cut(s) 205
Fnu4HI GCNGC 1 cut(s) 305
FokI GGATG 1 cut(s) 628
FriOI GRGCYC 2 cut(s) 321, 653
Fsp4HI GCNGC 1 cut(s) 305
GlaI GCGC 1 cut(s) 908
GluI GCNGC 1 cut(s) 305
GsuI CTGGAG 1 cut(s) 534
HaeIII GGCC 2 cut(s) 753, 886
HhaI GCGC 1 cut(s) 909
Hin1I GRCGYC 1 cut(s) 445
Hin1II CATG 4 cut(s) 11, 314, 500, 963
Hin6I GCGC 1 cut(s) 907
HinP1I GCGC 1 cut(s) 907
HincII GTYRAC 1 cut(s) 206
HindII GTYRAC 1 cut(s) 206
HinfI GANTC 3 cut(s) 351, 486, 863
HphI GGTGA 1 cut(s) 854
Hpy166II GTNNAC 2 cut(s) 206, 258
Hpy188I TCNGA 5 cut(s) 58, 133, 160, 406, 634
Hpy188III TCNNGA 3 cut(s) 311, 348, 389
Hpy8I GTNNAC 2 cut(s) 206, 258
Hpy99I CGWCG 2 cut(s) 444, 447
HpyAV CCTTC 1 cut(s) 365
HpyCH4III ACNGT 4 cut(s) 25, 658, 820, 917
HpyCH4IV ACGT 1 cut(s) 445
HpyCH4V TGCA 4 cut(s) 234, 457, 500, 585
HpyF10VI GCNNNNNNNGC 2 cut(s) 516, 719
HpyF3I CTNAG 4 cut(s) 164, 424, 432, 633
HpySE526I ACGT 1 cut(s) 445
Hsp92I GRCGYC 1 cut(s) 445
Hsp92II CATG 4 cut(s) 11, 314, 500, 963
HspAI GCGC 1 cut(s) 907
Kzo9I GATC 3 cut(s) 520, 790, 988
LguI GCTCTTC 1 cut(s) 474
LmnI GCTCC 2 cut(s) 562, 648
LpnPI CCDG 9 cut(s) 320, 462, 468, 495, 564, 571, 917, 936, 963
Lsp1109I GCAGC 1 cut(s) 316
LweI GCATC 3 cut(s) 49, 158, 316
MaeII ACGT 1 cut(s) 445
MaeIII GTNAC 2 cut(s) 70, 706
MalI GATC 3 cut(s) 522, 792, 990
MboI GATC 3 cut(s) 520, 790, 988
MboII GAAGA 7 cut(s) 96, 261, 461, 537, 621, 685, 911
MflI RGATCY 1 cut(s) 790
MhlI GDGCHC 2 cut(s) 321, 653
MluCI AATT 2 cut(s) 195, 702
MlyI GAGTC 2 cut(s) 480, 857
MmeI TCCRAC 2 cut(s) 172, 768
MseI TTAA 2 cut(s) 567, 1010
MslI CAYNNNNRTG 2 cut(s) 12, 312
MspR9I CCNGG 1 cut(s) 483
MvaI CCWGG 1 cut(s) 483
MvnI CGCG 1 cut(s) 909
MwoI GCNNNNNNNGC 2 cut(s) 516, 719
NdeII GATC 3 cut(s) 520, 790, 988
NlaIII CATG 4 cut(s) 11, 314, 500, 963
NlaIV GGNNCC 3 cut(s) 650, 792, 885
NmeAIII GCCGAG 1 cut(s) 965
NmuCI GTSAC 1 cut(s) 706
NspI RCATGY 3 cut(s) 11, 500, 963
NspV TTCGAA 1 cut(s) 969
PagI TCATGA 1 cut(s) 310
PciI ACATGT 1 cut(s) 7
PciSI GCTCTTC 1 cut(s) 474
PcsI WCGNNNNNNNCGW 1 cut(s) 119
PfeI GAWTC 1 cut(s) 351
PflFI GACNNNGTC 1 cut(s) 444
PflMI CCANNNNNTGG 1 cut(s) 252
PkrI GCNGC 1 cut(s) 306
PleI GAGTC 2 cut(s) 480, 857
PpsI GAGTC 2 cut(s) 480, 857
PscI ACATGT 1 cut(s) 7
PshAI GACNNNNGTC 1 cut(s) 867
Psp6I CCWGG 1 cut(s) 481
PspGI CCWGG 1 cut(s) 481
PspN4I GGNNCC 3 cut(s) 650, 792, 885
PspPI GGNCC 1 cut(s) 884
PsuI RGATCY 1 cut(s) 790
PsyI GACNNNGTC 1 cut(s) 444
RsaI GTAC 3 cut(s) 22, 802, 808
RsaNI GTAC 3 cut(s) 21, 801, 807
RseI CAYNNNNRTG 2 cut(s) 12, 312
SalI GTCGAC 1 cut(s) 204
SapI GCTCTTC 1 cut(s) 474
SaqAI TTAA 2 cut(s) 567, 1010
SatI GCNGC 1 cut(s) 305
Sau3AI GATC 3 cut(s) 520, 790, 988
Sau96I GGNCC 1 cut(s) 884
ScaI AGTACT 1 cut(s) 808
SchI GAGTC 2 cut(s) 480, 857
ScrFI CCNGG 1 cut(s) 483
SduI GDGCHC 2 cut(s) 321, 653
SfaNI GCATC 3 cut(s) 49, 158, 316
SfcI CTRYAG 1 cut(s) 144
SfuI TTCGAA 1 cut(s) 969
SmiMI CAYNNNNRTG 2 cut(s) 12, 312
Sse9I AATT 2 cut(s) 195, 702
SsiI CCGC 2 cut(s) 613, 713
StyD4I CCNGG 1 cut(s) 481
TaaI ACNGT 4 cut(s) 25, 658, 820, 917
TaiI ACGT 1 cut(s) 448
TaqI TCGA 5 cut(s) 122, 205, 349, 879, 969
TasI AATT 2 cut(s) 195, 702
TatI WGTACW 1 cut(s) 806
TfiI GAWTC 1 cut(s) 351
Tru1I TTAA 2 cut(s) 567, 1010
Tru9I TTAA 2 cut(s) 567, 1010
TseFI GTSAC 1 cut(s) 706
TseI GCWGC 1 cut(s) 304
Tsp45I GTSAC 1 cut(s) 706
TspDTI ATGAA 4 cut(s) 96, 277, 502, 865
TspGWI ACGGA 1 cut(s) 211
Tth111I GACNNNGTC 1 cut(s) 444
Van91I CCANNNNNTGG 1 cut(s) 252
XapI RAATTY 1 cut(s) 195
XceI RCATGY 3 cut(s) 11, 500, 963
XmiI GTMKAC 1 cut(s) 205
ZraI GACGTC 1 cut(s) 446
ZrmI AGTACT 1 cut(s) 808
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.