Prupe.5G068800_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000270
Physical Location & Seq
Reverse (-)
8303913 .. 8305289
1377 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G068800.1

Sequence Viewer

Length: 1149 bp
ATGATGATGAATGATAGTGTTGATGATCTCCCAGAGGTTTTATTGGTTGAAATCATTTGTCGACTTTCTTGTAGTAAGTTTGTTTTTCAATGCAAGTGCGTGTCCAAGCGTTGGTGTGAACTCATCTCTAGTTCTCATTTTGTTGGGCAATATGTACGTTGCCAACGTGATTTGAAAACGCCCATTTTAGGTACAGTAGTTGTAGACAATGGAACATTCTTTCCGGTGGAAAACGAGGATGGTCTGATGAGTTTGCAGCTACCTGTTATTTCAGAAGCCGCACCAGAACAAAAATTATTTGTGGTAGGGGCGTGCAACGACTTAGTTTTGTGCTGCCCAAGCGAACTTGATCAACGTGATTATTACATTTGTAATCCATACACCAAGAAATGGGTTGCTCTTCCTCCCCCTCCTCGAATCCATAATTGGGTAAGCGTAGGGTTCATTTGTGATCCCTACTACAACTACAACTCATCTTCCACCTTCGATGATGAGGTTTCCATTAATGCTGAATATAGGTGGAGGGTTGTGCGACTACGTCAAGAGTTCTATGTGGACATCTTCTTTTCTGAGACCGGTGAATGGAGGGAGTCCGCTAATGTGGTATGCGGCCTACGAAATTATTTTGATATCATAACTGCTGGCGTTGCTTGCAATGGGAAGTTGTATTTTTCAGGTTCCGATCATGCATCCTCCTATATTCTGGAGTTGGATCCCTTCCAAGGTATCAGTAATATCAGTACTAATAATGGTGATGGTGATGGCGATCATATTATTGTTGACAAATGTCGGTTCAGTCTGGCACCTCTTGATATGTTGGCTGAAGTGCGGGGATATGCCATTTCGAAGTATCGGGTTCTTGGTGCATGTCGAGGGCATTTGCGGGTGTCCGATTTTCTGGTTGGTGATCATTTGAGTGTCTGGGAGTTAGATGCAGGCGATGATAATTTGAAATGGCGTTTGGTGGTCGACAAAGTTCCCTTCTTCCGAATGGATTCTCCCAATTCCGACGATCCTTTGATGCCTCTAGATGAGTGGTCAAAAACTGTGATAGGTTTCCACCCGAGTATTGAGGATACCATCTACGTAGATGCTAGGCAAATTATCAGATTTCCGCAGTGTAAAATCAATGCCAACAAAGAACGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

383

Amino Acids

43.51

Weight (kDa)

4.89

Isoelectric Point (pI)

39.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 802
AccB7I CCANNNNNTGG 2 cut(s) 111, 390
AccI GTMKAC 3 cut(s) 61, 204, 969
AciI CCGC 6 cut(s) 279, 594, 609, 829, 883, 1115
AclWI GGATC 4 cut(s) 446, 707, 720, 1007
AcuI CTGAAG 1 cut(s) 843
AfaI GTAC 3 cut(s) 156, 193, 742
AfiI CCNNNNNNNGG 6 cut(s) 111, 188, 390, 427, 582, 722
AgeI ACCGGT 1 cut(s) 575
AgsI TTSAA 4 cut(s) 50, 89, 175, 952
AjuI GAANNNNNNNTTGG 4 cut(s) 409, 441, 944, 976
AloI GAACNNNNNNTCC 2 cut(s) 205, 237
AluBI AGCT 1 cut(s) 259
AluI AGCT 1 cut(s) 259
Alw26I GTCTC 1 cut(s) 566
AlwI GGATC 4 cut(s) 446, 707, 720, 1007
Ama87I CYCGRG 1 cut(s) 1063
AoxI GGCC 1 cut(s) 610
ApeKI GCWGC 2 cut(s) 256, 333
AseI ATTAAT 1 cut(s) 504
AsiGI ACCGGT 1 cut(s) 575
Asp700I GAANNNNTTC 1 cut(s) 994
AsuHPI GGTGA 4 cut(s) 590, 764, 770, 917
AsuII TTCGAA 1 cut(s) 845
AvaI CYCGRG 1 cut(s) 1063
BaeI ACNNNNGTAYC 2 cut(s) 183, 216
BamHI GGATCC 1 cut(s) 712
BanI GGYRCC 1 cut(s) 802
BbvI GCAGC 2 cut(s) 268, 320
BccI CCATC 4 cut(s) 233, 749, 755, 1088
BciVI GTATCC 1 cut(s) 1069
BclI TGATCA 2 cut(s) 349, 907
BcoDI GTCTC 1 cut(s) 566
BfaI CTAG 3 cut(s) 129, 1028, 1095
BfuI GTATCC 1 cut(s) 1069
BisI GCNGC 4 cut(s) 257, 279, 334, 610
BlsI GCNGC 4 cut(s) 258, 280, 335, 611
BmcAI AGTACT 1 cut(s) 742
BmeT110I CYCGRG 1 cut(s) 1063
BmiI GGNNCC 3 cut(s) 679, 714, 804
BmsI GCATC 4 cut(s) 698, 922, 1011, 1081
BoxI GACNNNNGTC 1 cut(s) 786
BpmI CTGGAG 1 cut(s) 725
Bpu14I TTCGAA 1 cut(s) 845
BsaAI YACGTR 1 cut(s) 1087
BsaBI GATNNNNATC 1 cut(s) 765
BsaI GGTCTC 1 cut(s) 566
BsaJI CCNNGG 1 cut(s) 721
BsaWI WCCGGW 2 cut(s) 223, 575
Bsc4I CCNNNNNNNGG 6 cut(s) 111, 188, 390, 427, 582, 722
Bse118I RCCGGY 1 cut(s) 575
Bse3DI GCAATG 1 cut(s) 661
Bse8I GATNNNNATC 1 cut(s) 765
BseDI CCNNGG 1 cut(s) 721
BseGI GGATG 2 cut(s) 244, 689
BseJI GATNNNNATC 1 cut(s) 765
BseLI CCNNNNNNNGG 6 cut(s) 111, 188, 390, 427, 582, 722
BseMI GCAATG 1 cut(s) 661
BseMII CTCAG 1 cut(s) 561
BseRI GAGGAG 1 cut(s) 402
BseXI GCAGC 2 cut(s) 268, 320
BshFI GGCC 1 cut(s) 612
BshNI GGYRCC 1 cut(s) 802
BshTI ACCGGT 1 cut(s) 575
BsiHKCI CYCGRG 1 cut(s) 1063
BsiSI CCGG 2 cut(s) 224, 576
BslI CCNNNNNNNGG 6 cut(s) 111, 188, 390, 427, 582, 722
BsmAI GTCTC 1 cut(s) 566
BsnI GGCC 1 cut(s) 612
Bso31I GGTCTC 1 cut(s) 566
BsoBI CYCGRG 1 cut(s) 1063
Bsp119I TTCGAA 1 cut(s) 845
Bsp143I GATC 8 cut(s) 25, 349, 451, 682, 712, 766, 907, 1012
BspACI CCGC 6 cut(s) 279, 594, 609, 829, 883, 1115
BspANI GGCC 1 cut(s) 612
BspCNI CTCAG 1 cut(s) 562
BspLI GGNNCC 3 cut(s) 679, 714, 804
BspPI GGATC 4 cut(s) 446, 707, 720, 1007
BspQI GCTCTTC 1 cut(s) 405
BspT104I TTCGAA 1 cut(s) 845
BspT107I GGYRCC 1 cut(s) 802
BspTNI GGTCTC 1 cut(s) 566
BsrDI GCAATG 1 cut(s) 661
BsrFI RCCGGY 1 cut(s) 575
BssAI RCCGGY 1 cut(s) 575
BssECI CCNNGG 1 cut(s) 721
BssMI GATC 8 cut(s) 25, 349, 451, 682, 712, 766, 907, 1012
BssT1I CCWWGG 1 cut(s) 721
Bst4CI ACNGT 3 cut(s) 196, 1048, 1146
Bst6I CTCTTC 1 cut(s) 405
BstBAI YACGTR 1 cut(s) 1087
BstBI TTCGAA 1 cut(s) 845
BstC8I GCNNGC 4 cut(s) 313, 643, 652, 937
BstDEI CTNAG 2 cut(s) 322, 570
BstF5I GGATG 2 cut(s) 244, 689
BstKTI GATC 8 cut(s) 28, 352, 454, 685, 715, 769, 910, 1015
BstMAI GTCTC 1 cut(s) 566
BstMBI GATC 8 cut(s) 25, 349, 451, 682, 712, 766, 907, 1012
BstMWI GCNNNNNNNGC 3 cut(s) 339, 647, 651
BstNSI RCATGY 1 cut(s) 870
BstPAI GACNNNNGTC 1 cut(s) 786
BstSNI TACGTA 1 cut(s) 1087
BstV1I GCAGC 2 cut(s) 268, 320
BstX2I RGATCY 1 cut(s) 712
BstYI RGATCY 1 cut(s) 712
BsuI GTATCC 1 cut(s) 1069
BsuRI GGCC 1 cut(s) 612
BtgZI GCGATG 1 cut(s) 954
BtsCI GGATG 2 cut(s) 244, 689
BtsI GCAGTG 1 cut(s) 1124
BtsIMutI CAGTG 1 cut(s) 1124
Cac8I GCNNGC 4 cut(s) 313, 643, 652, 937
Cfr10I RCCGGY 1 cut(s) 575
Csp6I GTAC 3 cut(s) 155, 192, 741
CspAI ACCGGT 1 cut(s) 575
CviAII CATG 2 cut(s) 686, 867
CviJI RGCY 4 cut(s) 259, 278, 612, 821
CviKI_1 RGCY 4 cut(s) 259, 278, 612, 821
CviQI GTAC 3 cut(s) 155, 192, 741
DdeI CTNAG 2 cut(s) 322, 570
DpnI GATC 8 cut(s) 27, 351, 453, 684, 714, 768, 909, 1014
DpnII GATC 8 cut(s) 25, 349, 451, 682, 712, 766, 907, 1012
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Eco105I TACGTA 1 cut(s) 1087
Eco130I CCWWGG 1 cut(s) 721
Eco31I GGTCTC 1 cut(s) 566
Eco32I GATATC 1 cut(s) 631
Eco57I CTGAAG 1 cut(s) 843
Eco88I CYCGRG 1 cut(s) 1063
EcoRV GATATC 1 cut(s) 631
EcoT14I CCWWGG 1 cut(s) 721
EcoT22I ATGCAT 1 cut(s) 691
ErhI CCWWGG 1 cut(s) 721
FaeI CATG 2 cut(s) 689, 870
FatI CATG 2 cut(s) 685, 866
FauI CCCGC 2 cut(s) 822, 876
FbaI TGATCA 2 cut(s) 349, 907
FblI GTMKAC 3 cut(s) 61, 204, 969
Fnu4HI GCNGC 4 cut(s) 257, 279, 334, 610
FokI GGATG 2 cut(s) 251, 676
Fsp4HI GCNGC 4 cut(s) 257, 279, 334, 610
FspBI CTAG 3 cut(s) 129, 1028, 1095
GluI GCNGC 4 cut(s) 257, 279, 334, 610
GsuI CTGGAG 1 cut(s) 725
HaeIII GGCC 1 cut(s) 612
HapII CCGG 2 cut(s) 224, 576
Hin1II CATG 2 cut(s) 689, 870
HincII GTYRAC 3 cut(s) 62, 781, 970
HindII GTYRAC 3 cut(s) 62, 781, 970
HinfI GANTC 3 cut(s) 417, 590, 995
HpaII CCGG 2 cut(s) 224, 576
HphI GGTGA 4 cut(s) 590, 764, 770, 917
Hpy166II GTNNAC 6 cut(s) 62, 119, 205, 556, 781, 970
Hpy188I TCNGA 8 cut(s) 246, 274, 571, 682, 892, 989, 1009, 1109
Hpy188III TCNNGA 4 cut(s) 542, 704, 809, 1028
Hpy8I GTNNAC 6 cut(s) 62, 119, 205, 556, 781, 970
Hpy99I CGWCG 1 cut(s) 1013
HpyAV CCTTC 3 cut(s) 493, 727, 991
HpyCH4III ACNGT 3 cut(s) 196, 1048, 1146
HpyCH4IV ACGT 5 cut(s) 157, 166, 355, 538, 1086
HpyCH4V TGCA 7 cut(s) 93, 256, 315, 654, 689, 866, 935
HpyF10VI GCNNNNNNNGC 3 cut(s) 339, 647, 651
HpyF3I CTNAG 2 cut(s) 322, 570
HpySE526I ACGT 5 cut(s) 157, 166, 355, 538, 1086
Hsp92II CATG 2 cut(s) 689, 870
Ksp22I TGATCA 2 cut(s) 349, 907
Kzo9I GATC 8 cut(s) 25, 349, 451, 682, 712, 766, 907, 1012
LguI GCTCTTC 1 cut(s) 405
Lsp1109I GCAGC 2 cut(s) 268, 320
LweI GCATC 4 cut(s) 698, 922, 1011, 1081
MaeI CTAG 3 cut(s) 129, 1028, 1095
MaeII ACGT 5 cut(s) 157, 166, 355, 538, 1086
MalI GATC 8 cut(s) 27, 351, 453, 684, 714, 768, 909, 1014
MboI GATC 8 cut(s) 25, 349, 451, 682, 712, 766, 907, 1012
MboII GAAGA 4 cut(s) 392, 468, 553, 976
MflI RGATCY 1 cut(s) 712
MluCI AATT 6 cut(s) 293, 424, 619, 946, 1003, 1101
MlyI GAGTC 1 cut(s) 599
MmeI TCCRAC 2 cut(s) 690, 1032
Mph1103I ATGCAT 1 cut(s) 691
MroXI GAANNNNTTC 1 cut(s) 994
MseI TTAA 1 cut(s) 504
MslI CAYNNNNRTG 1 cut(s) 915
MspI CCGG 2 cut(s) 224, 576
MwoI GCNNNNNNNGC 3 cut(s) 339, 647, 651
NdeII GATC 8 cut(s) 25, 349, 451, 682, 712, 766, 907, 1012
NlaIII CATG 2 cut(s) 689, 870
NlaIV GGNNCC 3 cut(s) 679, 714, 804
NsiI ATGCAT 1 cut(s) 691
NspI RCATGY 1 cut(s) 870
NspV TTCGAA 1 cut(s) 845
PciSI GCTCTTC 1 cut(s) 405
PcsI WCGNNNNNNNCGW 1 cut(s) 163
PdmI GAANNNNTTC 1 cut(s) 994
PfeI GAWTC 2 cut(s) 417, 995
PflFI GACNNNGTC 1 cut(s) 537
PflMI CCANNNNNTGG 2 cut(s) 111, 390
PinAI ACCGGT 1 cut(s) 575
PkrI GCNGC 4 cut(s) 258, 280, 335, 611
PleI GAGTC 1 cut(s) 598
PpsI GAGTC 1 cut(s) 598
Ppu21I YACGTR 1 cut(s) 1087
PshAI GACNNNNGTC 1 cut(s) 786
PshBI ATTAAT 1 cut(s) 504
PspN4I GGNNCC 3 cut(s) 679, 714, 804
PsuI RGATCY 1 cut(s) 712
PsyI GACNNNGTC 1 cut(s) 537
RsaI GTAC 3 cut(s) 156, 193, 742
RsaNI GTAC 3 cut(s) 155, 192, 741
RseI CAYNNNNRTG 1 cut(s) 915
SalI GTCGAC 2 cut(s) 60, 968
SapI GCTCTTC 1 cut(s) 405
SaqAI TTAA 1 cut(s) 504
SatI GCNGC 4 cut(s) 257, 279, 334, 610
Sau3AI GATC 8 cut(s) 25, 349, 451, 682, 712, 766, 907, 1012
ScaI AGTACT 1 cut(s) 742
SchI GAGTC 1 cut(s) 599
SfaNI GCATC 4 cut(s) 698, 922, 1011, 1081
SfuI TTCGAA 1 cut(s) 845
SmiMI CAYNNNNRTG 1 cut(s) 915
SnaBI TACGTA 1 cut(s) 1087
Sse9I AATT 6 cut(s) 293, 424, 619, 946, 1003, 1101
SsiI CCGC 6 cut(s) 279, 594, 609, 829, 883, 1115
SspMI CTAG 3 cut(s) 129, 1028, 1095
StyI CCWWGG 1 cut(s) 721
TaaI ACNGT 3 cut(s) 196, 1048, 1146
TaiI ACGT 5 cut(s) 160, 169, 358, 541, 1089
TaqI TCGA 6 cut(s) 61, 415, 486, 845, 871, 969
TasI AATT 6 cut(s) 293, 424, 619, 946, 1003, 1101
TatI WGTACW 1 cut(s) 740
TauI GCSGC 2 cut(s) 281, 612
TfiI GAWTC 2 cut(s) 417, 995
Tru1I TTAA 1 cut(s) 504
Tru9I TTAA 1 cut(s) 504
TscAI CASTG 1 cut(s) 1124
TseI GCWGC 2 cut(s) 256, 333
TspDTI ATGAA 2 cut(s) 23, 433
TspRI CASTG 1 cut(s) 1124
Tth111I GACNNNGTC 1 cut(s) 537
Van91I CCANNNNNTGG 2 cut(s) 111, 390
VspI ATTAAT 1 cut(s) 504
XbaI TCTAGA 1 cut(s) 1027
XceI RCATGY 1 cut(s) 870
XmiI GTMKAC 3 cut(s) 61, 204, 969
XmnI GAANNNNTTC 1 cut(s) 994
XspI CTAG 3 cut(s) 129, 1028, 1095
ZrmI AGTACT 1 cut(s) 742
Zsp2I ATGCAT 1 cut(s) 691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.