Rh3CG018700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0000270
Physical Location & Seq
Reverse (-)
1266984 .. 1267408
425 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG018700.1

Sequence Viewer

Length: 411 bp
ATGCACTTAGGTTTGTGCCGAGGGCGTTTGCGGATGTGCCTTGGTCATATCGCTCTTGGTGTTCATGCTCCATTCACTATTTGGGAGTTGAAAGAAAACAAAGGAAATGGAACTTTGGAATGGTGTTTGGTATCGGACCAAATTTTTCTTCACCAGATGGTTCCCAAAAGTCGTTTAATCAGTATACGCAGAGAGCGCTATGAAGTGTATACTGTGATAGGTTTCCATCCAGATGAGGAGGATGTCTTGTACTTTACAATCATTGACTATGTATTGATGTGCAATGTTCGTGAGAAGACCTTAGAGATTGCTGCAGAGATTCCATCTCGAGAACTAATTTGGGGCATGGCAGGCGCCTTCCCGCTGTTCCAACCACATTGGCCGACACCAGTTTCCAAACTAGATTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

136

Amino Acids

15.83

Weight (kDa)

6.29

Isoelectric Point (pI)

37.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 353
AccI GTMKAC 2 cut(s) 184, 209
AciI CCGC 2 cut(s) 31, 362
AcoI YGGCCR 1 cut(s) 380
AcsI RAATTY 1 cut(s) 141
AcyI GRCGYC 1 cut(s) 354
AfaI GTAC 1 cut(s) 251
AfeI AGCGCT 1 cut(s) 197
AgsI TTSAA 1 cut(s) 91
AjuI GAANNNNNNNTTGG 2 cut(s) 132, 164
Ama87I CYCGRG 1 cut(s) 327
Aor51HI AGCGCT 1 cut(s) 197
AoxI GGCC 1 cut(s) 380
ApeKI GCWGC 1 cut(s) 311
ApoI RAATTY 1 cut(s) 141
AspLEI GCGC 2 cut(s) 198, 356
AspS9I GGNCC 1 cut(s) 136
AsuHPI GGTGA 1 cut(s) 143
AvaI CYCGRG 1 cut(s) 327
AvaII GGWCC 1 cut(s) 136
BanI GGYRCC 1 cut(s) 353
BbsI GAAGAC 1 cut(s) 302
BbvI GCAGC 1 cut(s) 298
BccI CCATC 3 cut(s) 151, 234, 331
BfaI CTAG 1 cut(s) 401
BfmI CTRYAG 1 cut(s) 312
BfoI RGCGCY 2 cut(s) 199, 357
BisI GCNGC 1 cut(s) 312
BlsI GCNGC 1 cut(s) 313
Bme18I GGWCC 1 cut(s) 136
BmeT110I CYCGRG 1 cut(s) 327
BmgT120I GGNCC 1 cut(s) 136
BmiI GGNNCC 2 cut(s) 162, 355
BpiI GAAGAC 1 cut(s) 302
BsaHI GRCGYC 1 cut(s) 354
BsaJI CCNNGG 2 cut(s) 19, 40
Bse1I ACTGG 1 cut(s) 389
Bse3DI GCAATG 1 cut(s) 289
BseDI CCNNGG 2 cut(s) 19, 40
BseGI GGATG 3 cut(s) 39, 226, 247
BseMI GCAATG 1 cut(s) 289
BseNI ACTGG 1 cut(s) 389
BseRI GAGGAG 1 cut(s) 251
BseXI GCAGC 1 cut(s) 298
BshFI GGCC 1 cut(s) 382
BshNI GGYRCC 1 cut(s) 353
BsiHKCI CYCGRG 1 cut(s) 327
BsnI GGCC 1 cut(s) 382
BsoBI CYCGRG 1 cut(s) 327
BspACI CCGC 2 cut(s) 31, 362
BspANI GGCC 1 cut(s) 382
BspLI GGNNCC 2 cut(s) 162, 355
BspMAI CTGCAG 1 cut(s) 316
BspT107I GGYRCC 1 cut(s) 353
BsrDI GCAATG 1 cut(s) 289
BsrI ACTGG 1 cut(s) 389
BssECI CCNNGG 2 cut(s) 19, 40
BssNAI GTATAC 2 cut(s) 185, 210
BssNI GRCGYC 1 cut(s) 354
BssT1I CCWWGG 1 cut(s) 40
Bst1107I GTATAC 2 cut(s) 185, 210
Bst4CI ACNGT 1 cut(s) 214
BstACI GRCGYC 1 cut(s) 354
BstC8I GCNNGC 1 cut(s) 352
BstDEI CTNAG 2 cut(s) 7, 301
BstF5I GGATG 3 cut(s) 39, 226, 247
BstH2I RGCGCY 2 cut(s) 199, 357
BstHHI GCGC 2 cut(s) 198, 356
BstMWI GCNNNNNNNGC 2 cut(s) 195, 351
BstSFI CTRYAG 1 cut(s) 312
BstV1I GCAGC 1 cut(s) 298
BstV2I GAAGAC 1 cut(s) 302
BstZ17I GTATAC 2 cut(s) 185, 210
BsuRI GGCC 1 cut(s) 382
BtsCI GGATG 3 cut(s) 39, 226, 247
Cac8I GCNNGC 1 cut(s) 352
CfoI GCGC 2 cut(s) 198, 356
Cfr13I GGNCC 1 cut(s) 136
Csp6I GTAC 1 cut(s) 250
CviAII CATG 2 cut(s) 65, 346
CviJI RGCY 1 cut(s) 382
CviKI_1 RGCY 1 cut(s) 382
CviQI GTAC 1 cut(s) 250
DdeI CTNAG 2 cut(s) 7, 301
DinI GGCGCC 1 cut(s) 355
EaeI YGGCCR 1 cut(s) 380
Eco130I CCWWGG 1 cut(s) 40
Eco47I GGWCC 1 cut(s) 136
Eco47III AGCGCT 1 cut(s) 197
Eco88I CYCGRG 1 cut(s) 327
EcoT14I CCWWGG 1 cut(s) 40
EgeI GGCGCC 1 cut(s) 355
EheI GGCGCC 1 cut(s) 355
ErhI CCWWGG 1 cut(s) 40
FaeI CATG 2 cut(s) 68, 349
FaiI YATR 7 cut(s) 48, 66, 185, 201, 210, 270, 347
FatI CATG 2 cut(s) 64, 345
FauI CCCGC 1 cut(s) 369
FblI GTMKAC 2 cut(s) 184, 209
Fnu4HI GCNGC 1 cut(s) 312
FokI GGATG 3 cut(s) 46, 213, 254
Fsp4HI GCNGC 1 cut(s) 312
FspBI CTAG 1 cut(s) 401
GlaI GCGC 2 cut(s) 197, 355
GluI GCNGC 1 cut(s) 312
HaeII RGCGCY 2 cut(s) 199, 357
HaeIII GGCC 1 cut(s) 382
HhaI GCGC 2 cut(s) 198, 356
Hin1I GRCGYC 1 cut(s) 354
Hin1II CATG 2 cut(s) 68, 349
Hin6I GCGC 2 cut(s) 196, 354
HinP1I GCGC 2 cut(s) 196, 354
HinfI GANTC 1 cut(s) 319
HphI GGTGA 1 cut(s) 143
Hpy166II GTNNAC 2 cut(s) 185, 210
Hpy188I TCNGA 1 cut(s) 136
Hpy188III TCNNGA 4 cut(s) 230, 290, 327, 329
Hpy8I GTNNAC 2 cut(s) 185, 210
HpyAV CCTTC 1 cut(s) 367
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4V TGCA 3 cut(s) 4, 282, 314
HpyF10VI GCNNNNNNNGC 2 cut(s) 195, 351
HpyF3I CTNAG 2 cut(s) 7, 301
Hsp92I GRCGYC 1 cut(s) 354
Hsp92II CATG 2 cut(s) 68, 349
HspAI GCGC 2 cut(s) 196, 354
KasI GGCGCC 1 cut(s) 353
LmnI GCTCC 1 cut(s) 73
LpnPI CCDG 4 cut(s) 167, 243, 336, 402
Lsp1109I GCAGC 1 cut(s) 298
MaeI CTAG 1 cut(s) 401
MboII GAAGA 2 cut(s) 140, 307
MluCI AATT 2 cut(s) 141, 336
Mly113I GGCGCC 1 cut(s) 354
MmeI TCCRAC 1 cut(s) 394
MnlI CCTC 3 cut(s) 14, 229, 232
MseI TTAA 1 cut(s) 176
MslI CAYNNNNRTG 1 cut(s) 231
MspA1I CMGCKG 1 cut(s) 364
MwoI GCNNNNNNNGC 2 cut(s) 195, 351
NarI GGCGCC 1 cut(s) 354
NlaIII CATG 2 cut(s) 68, 349
NlaIV GGNNCC 2 cut(s) 162, 355
NmeAIII GCCGAG 1 cut(s) 44
PaeR7I CTCGAG 1 cut(s) 327
PfeI GAWTC 1 cut(s) 319
PkrI GCNGC 1 cut(s) 313
PluTI GGCGCC 1 cut(s) 357
PspN4I GGNNCC 2 cut(s) 162, 355
PspPI GGNCC 1 cut(s) 136
PstI CTGCAG 1 cut(s) 316
RsaI GTAC 1 cut(s) 251
RsaNI GTAC 1 cut(s) 250
RseI CAYNNNNRTG 1 cut(s) 231
SaqAI TTAA 1 cut(s) 176
SatI GCNGC 1 cut(s) 312
Sau96I GGNCC 1 cut(s) 136
SetI ASST 3 cut(s) 13, 223, 302
SfcI CTRYAG 1 cut(s) 312
SfoI GGCGCC 1 cut(s) 355
Sfr274I CTCGAG 1 cut(s) 327
SinI GGWCC 1 cut(s) 136
SlaI CTCGAG 1 cut(s) 327
SmiMI CAYNNNNRTG 1 cut(s) 231
SmlI CTYRAG 1 cut(s) 327
SmoI CTYRAG 1 cut(s) 327
Sse9I AATT 2 cut(s) 141, 336
SsiI CCGC 2 cut(s) 31, 362
SspDI GGCGCC 1 cut(s) 353
SspMI CTAG 1 cut(s) 401
StyI CCWWGG 1 cut(s) 40
TaaI ACNGT 1 cut(s) 214
TaqI TCGA 1 cut(s) 328
TasI AATT 2 cut(s) 141, 336
TatI WGTACW 1 cut(s) 249
TfiI GAWTC 1 cut(s) 319
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TseI GCWGC 1 cut(s) 311
TspDTI ATGAA 2 cut(s) 53, 216
VpaK11BI GGWCC 1 cut(s) 136
XapI RAATTY 1 cut(s) 141
XcmI CCANNNNNNNNNTGG 1 cut(s) 78
XhoI CTCGAG 1 cut(s) 327
XmiI GTMKAC 2 cut(s) 184, 209
XspI CTAG 1 cut(s) 401
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.