Rmu_sc0002725.1_g000015

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002725.1
OG0000270
Physical Location & Seq
Reverse (-)
57043 .. 57669
627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002725.1_g000015.1.cds

Sequence Viewer

Length: 627 bp
atggagagagatagatgtagtatgccctcggccatttattcatttgcgatttttgatgattccaatcggattactgcaacagattacgtagcttacaatggaatgttgtactggcggagcagaaatggccttatacttgagttggatacgccaaaattcaatactagtattgctaagtaccgtttcattgaaccgcctgagggttttaatagtccaccagcaagaggctcgctaggagtaagcggagggcgtctgcggttgagcagggaaggagaagactttctccctcaagatcacgacgagtttctgcagccatttagagttagggagttgagacaagttgtgaagggcagcgaaggcaaactcaaatggttagccgacagtgttcctccagcttgtgaaaatatttctgtcagccaaccgtacacttttaggatgctagctttccacccaaacaatgaagatgtcgtgtatttgactcattaccataaaattatcacatgcaaccttcgtggaggaacgttagagaaaacttcagagtgtccggtaaagggaatgacgagggtacactgctacccgttttctctcccatggtggcctaccccgttcctaggactcttagtgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

208

Amino Acids

23.81

Weight (kDa)

7.66

Isoelectric Point (pI)

54.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 115, 194, 243, 256
AclI AACGTT 1 cut(s) 521
AcoI YGGCCR 1 cut(s) 30
AcsI RAATTY 1 cut(s) 155
AcuI CTGAAG 1 cut(s) 519
AcyI GRCGYC 1 cut(s) 250
AfaI GTAC 4 cut(s) 110, 179, 425, 567
AfiI CCNNNNNNNGG 4 cut(s) 200, 224, 551, 611
AgsI TTSAA 2 cut(s) 160, 191
AhlI ACTAGT 1 cut(s) 164
AluBI AGCT 3 cut(s) 92, 395, 443
AluI AGCT 3 cut(s) 92, 395, 443
Alw26I GTCTC 1 cut(s) 328
AoxI GGCC 3 cut(s) 30, 127, 596
ApeKI GCWGC 2 cut(s) 310, 351
ApoI RAATTY 1 cut(s) 155
Asp700I GAANNNNTTC 1 cut(s) 279
AspA2I CCTAGG 1 cut(s) 610
AsuNHI GCTAGC 1 cut(s) 439
AvrII CCTAGG 1 cut(s) 610
AxyI CCTNAGG 1 cut(s) 198
BbsI GAAGAC 1 cut(s) 282
BbvI GCAGC 2 cut(s) 322, 363
BcgI CGANNNNNNTGC 2 cut(s) 210, 244
BciVI GTATCC 1 cut(s) 139
BcoDI GTCTC 1 cut(s) 328
BcuI ACTAGT 1 cut(s) 164
BfaI CTAG 4 cut(s) 165, 233, 440, 611
BfmI CTRYAG 1 cut(s) 308
BfuI GTATCC 1 cut(s) 139
BisI GCNGC 2 cut(s) 311, 352
BlnI CCTAGG 1 cut(s) 610
BlsI GCNGC 2 cut(s) 312, 353
BmsI GCATC 1 cut(s) 426
BmtI GCTAGC 1 cut(s) 443
BpiI GAAGAC 1 cut(s) 282
BpmI CTGGAG 1 cut(s) 375
BpuEI CTTGAG 2 cut(s) 158, 273
BsaAI YACGTR 1 cut(s) 88
BsaBI GATNNNNATC 1 cut(s) 63
BsaHI GRCGYC 1 cut(s) 250
BsaJI CCNNGG 3 cut(s) 27, 590, 610
BsaWI WCCGGW 1 cut(s) 544
Bsc4I CCNNNNNNNGG 4 cut(s) 200, 224, 551, 611
Bse1I ACTGG 1 cut(s) 116
Bse21I CCTNAGG 1 cut(s) 198
Bse8I GATNNNNATC 1 cut(s) 63
BseDI CCNNGG 3 cut(s) 27, 590, 610
BseGI GGATG 1 cut(s) 441
BseJI GATNNNNATC 1 cut(s) 63
BseLI CCNNNNNNNGG 4 cut(s) 200, 224, 551, 611
BseMII CTCAG 1 cut(s) 189
BseNI ACTGG 1 cut(s) 116
BseXI GCAGC 2 cut(s) 322, 363
BshFI GGCC 3 cut(s) 32, 129, 598
BsiSI CCGG 1 cut(s) 545
BslI CCNNNNNNNGG 4 cut(s) 200, 224, 551, 611
BsmAI GTCTC 1 cut(s) 328
BsnI GGCC 3 cut(s) 32, 129, 598
Bsp143I GATC 1 cut(s) 292
Bsp19I CCATGG 1 cut(s) 590
BspACI CCGC 4 cut(s) 115, 194, 243, 256
BspANI GGCC 3 cut(s) 32, 129, 598
BspCNI CTCAG 1 cut(s) 190
BspMAI CTGCAG 1 cut(s) 312
BspOI GCTAGC 1 cut(s) 443
BsrI ACTGG 1 cut(s) 116
BssECI CCNNGG 3 cut(s) 27, 590, 610
BssMI GATC 1 cut(s) 292
BssNI GRCGYC 1 cut(s) 250
BssT1I CCWWGG 2 cut(s) 590, 610
Bst4CI ACNGT 3 cut(s) 182, 383, 423
BstACI GRCGYC 1 cut(s) 250
BstBAI YACGTR 1 cut(s) 88
BstC8I GCNNGC 2 cut(s) 230, 441
BstDEI CTNAG 3 cut(s) 174, 198, 619
BstDSI CCRYGG 1 cut(s) 590
BstF5I GGATG 1 cut(s) 441
BstKTI GATC 1 cut(s) 295
BstMAI GTCTC 1 cut(s) 328
BstMBI GATC 1 cut(s) 292
BstMWI GCNNNNNNNGC 2 cut(s) 126, 357
BstNSI RCATGY 1 cut(s) 504
BstSFI CTRYAG 1 cut(s) 308
BstSNI TACGTA 1 cut(s) 88
BstV1I GCAGC 2 cut(s) 322, 363
BstV2I GAAGAC 1 cut(s) 282
Bsu36I CCTNAGG 1 cut(s) 198
BsuI GTATCC 1 cut(s) 139
BsuRI GGCC 3 cut(s) 32, 129, 598
BtgI CCRYGG 1 cut(s) 590
BtsCI GGATG 1 cut(s) 441
BtsI GCAGTG 1 cut(s) 568
BtsIMutI CAGTG 2 cut(s) 388, 568
Cac8I GCNNGC 2 cut(s) 230, 441
CseI GACGC 1 cut(s) 239
Csp6I GTAC 4 cut(s) 109, 178, 424, 566
CspCI CAANNNNNGTGG 2 cut(s) 493, 528
CviAII CATG 2 cut(s) 501, 591
CviQI GTAC 4 cut(s) 109, 178, 424, 566
DdeI CTNAG 3 cut(s) 174, 198, 619
DpnI GATC 1 cut(s) 294
DpnII GATC 1 cut(s) 292
EaeI YGGCCR 1 cut(s) 30
EciI GGCGGA 1 cut(s) 130
Eco105I TACGTA 1 cut(s) 88
Eco130I CCWWGG 2 cut(s) 590, 610
Eco57I CTGAAG 1 cut(s) 519
Eco81I CCTNAGG 1 cut(s) 198
EcoT14I CCWWGG 2 cut(s) 590, 610
ErhI CCWWGG 2 cut(s) 590, 610
FaeI CATG 2 cut(s) 504, 594
FaiI YATR 5 cut(s) 23, 134, 489, 502, 592
FatI CATG 2 cut(s) 500, 590
Fnu4HI GCNGC 2 cut(s) 311, 352
FokI GGATG 1 cut(s) 448
Fsp4HI GCNGC 2 cut(s) 311, 352
FspBI CTAG 4 cut(s) 165, 233, 440, 611
GluI GCNGC 2 cut(s) 311, 352
GsuI CTGGAG 1 cut(s) 375
HaeIII GGCC 3 cut(s) 32, 129, 598
HapII CCGG 1 cut(s) 545
HgaI GACGC 1 cut(s) 239
Hin1I GRCGYC 1 cut(s) 250
Hin1II CATG 2 cut(s) 504, 594
HinfI GANTC 3 cut(s) 59, 478, 615
HpaII CCGG 1 cut(s) 545
Hpy166II GTNNAC 3 cut(s) 215, 426, 568
Hpy188I TCNGA 2 cut(s) 69, 538
Hpy188III TCNNGA 2 cut(s) 290, 296
Hpy8I GTNNAC 3 cut(s) 215, 426, 568
Hpy99I CGWCG 1 cut(s) 302
HpyAV CCTTC 4 cut(s) 263, 340, 350, 518
HpyCH4III ACNGT 3 cut(s) 182, 383, 423
HpyCH4IV ACGT 2 cut(s) 87, 521
HpyCH4V TGCA 3 cut(s) 77, 310, 504
HpyF10VI GCNNNNNNNGC 2 cut(s) 126, 357
HpyF3I CTNAG 3 cut(s) 174, 198, 619
HpySE526I ACGT 2 cut(s) 87, 521
Hsp92I GRCGYC 1 cut(s) 250
Hsp92II CATG 2 cut(s) 504, 594
Kzo9I GATC 1 cut(s) 292
LmnI GCTCC 1 cut(s) 117
LpnPI CCDG 6 cut(s) 97, 210, 231, 250, 405, 558
Lsp1109I GCAGC 2 cut(s) 322, 363
LweI GCATC 1 cut(s) 426
MaeI CTAG 4 cut(s) 165, 233, 440, 611
MaeII ACGT 2 cut(s) 87, 521
MalI GATC 1 cut(s) 294
MboI GATC 1 cut(s) 292
MboII GAAGA 2 cut(s) 287, 473
MluCI AATT 2 cut(s) 155, 492
MlyI GAGTC 2 cut(s) 472, 609
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 8 cut(s) 37, 193, 218, 239, 297, 399, 509, 555
MroXI GAANNNNTTC 1 cut(s) 279
MseI TTAA 1 cut(s) 207
MspI CCGG 1 cut(s) 545
MwoI GCNNNNNNNGC 2 cut(s) 126, 357
NcoI CCATGG 1 cut(s) 590
NdeII GATC 1 cut(s) 292
NheI GCTAGC 1 cut(s) 439
NlaIII CATG 2 cut(s) 504, 594
NmeAIII GCCGAG 1 cut(s) 8
NspI RCATGY 1 cut(s) 504
PdmI GAANNNNTTC 1 cut(s) 279
PfeI GAWTC 1 cut(s) 59
PkrI GCNGC 2 cut(s) 312, 353
PleI GAGTC 2 cut(s) 472, 609
PpsI GAGTC 2 cut(s) 472, 609
Ppu21I YACGTR 1 cut(s) 88
Psp1406I AACGTT 1 cut(s) 521
PstI CTGCAG 1 cut(s) 312
RsaI GTAC 4 cut(s) 110, 179, 425, 567
RsaNI GTAC 4 cut(s) 109, 178, 424, 566
SaqAI TTAA 1 cut(s) 207
SatI GCNGC 2 cut(s) 311, 352
Sau3AI GATC 1 cut(s) 292
SchI GAGTC 2 cut(s) 472, 609
SetI ASST 6 cut(s) 90, 94, 397, 445, 510, 524
SfaNI GCATC 1 cut(s) 426
SfcI CTRYAG 1 cut(s) 308
SmlI CTYRAG 2 cut(s) 137, 288
SmoI CTYRAG 2 cut(s) 137, 288
SnaBI TACGTA 1 cut(s) 88
SpeI ACTAGT 1 cut(s) 164
Sse9I AATT 2 cut(s) 155, 492
SsiI CCGC 4 cut(s) 115, 194, 243, 256
SspI AATATT 1 cut(s) 406
SspMI CTAG 4 cut(s) 165, 233, 440, 611
StyI CCWWGG 2 cut(s) 590, 610
TaaI ACNGT 3 cut(s) 182, 383, 423
TaiI ACGT 2 cut(s) 90, 524
TasI AATT 2 cut(s) 155, 492
TatI WGTACW 1 cut(s) 108
TfiI GAWTC 1 cut(s) 59
Tru1I TTAA 1 cut(s) 207
Tru9I TTAA 1 cut(s) 207
TscAI CASTG 2 cut(s) 388, 575
TseI GCWGC 2 cut(s) 310, 351
TspDTI ATGAA 3 cut(s) 30, 175, 474
TspRI CASTG 2 cut(s) 388, 575
XapI RAATTY 1 cut(s) 155
XceI RCATGY 1 cut(s) 504
XmaJI CCTAGG 1 cut(s) 610
XmnI GAANNNNTTC 1 cut(s) 279
XspI CTAG 4 cut(s) 165, 233, 440, 611
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.