Rh1DG114100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000270
Physical Location & Seq
Reverse (-)
20951354 .. 20951884
531 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG114100.1

Sequence Viewer

Length: 531 bp
ATGTTGTACTGGCGGAGCAGAAATGGCCTTATACTTGAGTTGGATACGCCCAAATTCAATACTAGTATTGCTAAGTACCGTTTCATTGAACCGCCTGAGGGTTTTAATAGTCCACCAGCAAGAGGCTCGCTAGGAGTAAGCGGAGGGCGTCTGCAGTTGAACAGGGAAGGAGAAGACTTTCTCCCTCAAGATCACGACGAGTTTCTGCAGCCATTTAGAGTTAGGGAGTTGAGACAAGTTGTGAAGGGCAGCGAAGGCAAACTCAAATGGTTAGCCGACAGTGTTCCTCTAGCTTGTAAAAATATTGCTGTCAGCCAACCGTACACTTTTAGGATGCTAGCTTTCCACCCAAACAATGAGGATGTCGTGTATTTGGCTCATTACCATAAAATTATCACATGCAACCTTCGTGGAGGAACGTTAGAGAAAACTTCAGAGTGTCCAGTAAAGGGAAGGACGAGGGTACACTGCTACCCGTTTTCTCTCCCATGGTGGCCTACCCCGGTTCCTAGGACTCTTAGTGTAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

176

Amino Acids

20.18

Weight (kDa)

9.12

Isoelectric Point (pI)

56.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 13, 92, 141
AclI AACGTT 1 cut(s) 419
AcsI RAATTY 1 cut(s) 53
AcuI CTGAAG 1 cut(s) 417
AcyI GRCGYC 1 cut(s) 148
AfaI GTAC 4 cut(s) 8, 77, 323, 465
AfiI CCNNNNNNNGG 3 cut(s) 98, 122, 449
AgsI TTSAA 3 cut(s) 58, 89, 160
AhlI ACTAGT 1 cut(s) 62
AluBI AGCT 2 cut(s) 293, 341
AluI AGCT 2 cut(s) 293, 341
Alw26I GTCTC 1 cut(s) 226
AoxI GGCC 2 cut(s) 25, 494
ApeKI GCWGC 2 cut(s) 208, 249
ApoI RAATTY 1 cut(s) 53
Asp700I GAANNNNTTC 1 cut(s) 177
AspA2I CCTAGG 1 cut(s) 509
AsuC2I CCSGG 1 cut(s) 503
AsuNHI GCTAGC 1 cut(s) 337
AvrII CCTAGG 1 cut(s) 509
AxyI CCTNAGG 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 180
BbvI GCAGC 2 cut(s) 220, 261
BcgI CGANNNNNNTGC 2 cut(s) 108, 142
BciVI GTATCC 1 cut(s) 37
BcnI CCSGG 1 cut(s) 503
BcoDI GTCTC 1 cut(s) 226
BcuI ACTAGT 1 cut(s) 62
BfaI CTAG 5 cut(s) 63, 131, 290, 338, 510
BfmI CTRYAG 2 cut(s) 152, 206
BfuI GTATCC 1 cut(s) 37
BisI GCNGC 2 cut(s) 209, 250
BlnI CCTAGG 1 cut(s) 509
BlsI GCNGC 2 cut(s) 210, 251
Bme1390I CCNGG 1 cut(s) 503
BmiI GGNNCC 1 cut(s) 507
BmrFI CCNGG 1 cut(s) 503
BmsI GCATC 1 cut(s) 324
BmtI GCTAGC 1 cut(s) 341
BpiI GAAGAC 1 cut(s) 180
BpuEI CTTGAG 2 cut(s) 56, 171
BpuMI CCSGG 1 cut(s) 503
BsaHI GRCGYC 1 cut(s) 148
BsaJI CCNNGG 3 cut(s) 488, 501, 509
Bsc4I CCNNNNNNNGG 3 cut(s) 98, 122, 449
Bse1I ACTGG 2 cut(s) 14, 443
Bse21I CCTNAGG 1 cut(s) 96
BseDI CCNNGG 3 cut(s) 488, 501, 509
BseGI GGATG 2 cut(s) 339, 367
BseLI CCNNNNNNNGG 3 cut(s) 98, 122, 449
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 2 cut(s) 14, 443
BseXI GCAGC 2 cut(s) 220, 261
BshFI GGCC 2 cut(s) 27, 496
BsiSI CCGG 1 cut(s) 503
BslI CCNNNNNNNGG 3 cut(s) 98, 122, 449
BsmAI GTCTC 1 cut(s) 226
BsnI GGCC 2 cut(s) 27, 496
Bsp143I GATC 1 cut(s) 190
Bsp19I CCATGG 1 cut(s) 488
BspACI CCGC 3 cut(s) 13, 92, 141
BspANI GGCC 2 cut(s) 27, 496
BspCNI CTCAG 1 cut(s) 88
BspLI GGNNCC 1 cut(s) 507
BspMAI CTGCAG 2 cut(s) 156, 210
BspOI GCTAGC 1 cut(s) 341
BsrI ACTGG 2 cut(s) 14, 443
BssECI CCNNGG 3 cut(s) 488, 501, 509
BssMI GATC 1 cut(s) 190
BssNI GRCGYC 1 cut(s) 148
BssT1I CCWWGG 2 cut(s) 488, 509
Bst4CI ACNGT 3 cut(s) 80, 281, 321
BstACI GRCGYC 1 cut(s) 148
BstC8I GCNNGC 2 cut(s) 128, 339
BstDEI CTNAG 3 cut(s) 72, 96, 518
BstDSI CCRYGG 1 cut(s) 488
BstF5I GGATG 2 cut(s) 339, 367
BstKTI GATC 1 cut(s) 193
BstMAI GTCTC 1 cut(s) 226
BstMBI GATC 1 cut(s) 190
BstMWI GCNNNNNNNGC 2 cut(s) 24, 255
BstNSI RCATGY 1 cut(s) 402
BstSCI CCNGG 1 cut(s) 501
BstSFI CTRYAG 2 cut(s) 152, 206
BstV1I GCAGC 2 cut(s) 220, 261
BstV2I GAAGAC 1 cut(s) 180
Bsu36I CCTNAGG 1 cut(s) 96
BsuI GTATCC 1 cut(s) 37
BsuRI GGCC 2 cut(s) 27, 496
BtgI CCRYGG 1 cut(s) 488
BtsCI GGATG 2 cut(s) 339, 367
BtsI GCAGTG 1 cut(s) 466
BtsIMutI CAGTG 2 cut(s) 286, 466
Cac8I GCNNGC 2 cut(s) 128, 339
CseI GACGC 1 cut(s) 137
Csp6I GTAC 4 cut(s) 7, 76, 322, 464
CspCI CAANNNNNGTGG 2 cut(s) 391, 426
CviAII CATG 2 cut(s) 399, 489
CviJI RGCY 9 cut(s) 27, 126, 211, 275, 293, 315, 341, 377, 496
CviKI_1 RGCY 9 cut(s) 27, 126, 211, 275, 293, 315, 341, 377, 496
CviQI GTAC 4 cut(s) 7, 76, 322, 464
DdeI CTNAG 3 cut(s) 72, 96, 518
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
EciI GGCGGA 1 cut(s) 28
Eco130I CCWWGG 2 cut(s) 488, 509
Eco57I CTGAAG 1 cut(s) 417
Eco81I CCTNAGG 1 cut(s) 96
EcoT14I CCWWGG 2 cut(s) 488, 509
ErhI CCWWGG 2 cut(s) 488, 509
FaeI CATG 2 cut(s) 402, 492
FaiI YATR 4 cut(s) 32, 387, 400, 490
FatI CATG 2 cut(s) 398, 488
Fnu4HI GCNGC 2 cut(s) 209, 250
FokI GGATG 2 cut(s) 346, 374
Fsp4HI GCNGC 2 cut(s) 209, 250
FspBI CTAG 5 cut(s) 63, 131, 290, 338, 510
GluI GCNGC 2 cut(s) 209, 250
HaeIII GGCC 2 cut(s) 27, 496
HapII CCGG 1 cut(s) 503
HgaI GACGC 1 cut(s) 137
Hin1I GRCGYC 1 cut(s) 148
Hin1II CATG 2 cut(s) 402, 492
HinfI GANTC 1 cut(s) 514
HpaII CCGG 1 cut(s) 503
Hpy166II GTNNAC 3 cut(s) 113, 324, 466
Hpy188I TCNGA 1 cut(s) 436
Hpy188III TCNNGA 2 cut(s) 188, 194
Hpy8I GTNNAC 3 cut(s) 113, 324, 466
Hpy99I CGWCG 1 cut(s) 200
HpyAV CCTTC 5 cut(s) 161, 238, 248, 416, 447
HpyCH4III ACNGT 3 cut(s) 80, 281, 321
HpyCH4IV ACGT 1 cut(s) 419
HpyCH4V TGCA 3 cut(s) 154, 208, 402
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 255
HpyF3I CTNAG 3 cut(s) 72, 96, 518
HpySE526I ACGT 1 cut(s) 419
Hsp92I GRCGYC 1 cut(s) 148
Hsp92II CATG 2 cut(s) 402, 492
Kzo9I GATC 1 cut(s) 190
LmnI GCTCC 1 cut(s) 15
LpnPI CCDG 5 cut(s) 108, 129, 148, 456, 516
Lsp1109I GCAGC 2 cut(s) 220, 261
LweI GCATC 1 cut(s) 324
MaeI CTAG 5 cut(s) 63, 131, 290, 338, 510
MaeII ACGT 1 cut(s) 419
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 1 cut(s) 185
MluCI AATT 2 cut(s) 53, 390
MlyI GAGTC 1 cut(s) 508
MmeI TCCRAC 1 cut(s) 21
MnlI CCTC 8 cut(s) 91, 116, 137, 195, 297, 352, 407, 453
MroXI GAANNNNTTC 1 cut(s) 177
MseI TTAA 1 cut(s) 105
MspI CCGG 1 cut(s) 503
MspR9I CCNGG 1 cut(s) 503
MwoI GCNNNNNNNGC 2 cut(s) 24, 255
NciI CCSGG 1 cut(s) 503
NcoI CCATGG 1 cut(s) 488
NdeII GATC 1 cut(s) 190
NheI GCTAGC 1 cut(s) 337
NlaIII CATG 2 cut(s) 402, 492
NlaIV GGNNCC 1 cut(s) 507
NspI RCATGY 1 cut(s) 402
PdmI GAANNNNTTC 1 cut(s) 177
PkrI GCNGC 2 cut(s) 210, 251
PleI GAGTC 1 cut(s) 508
PpsI GAGTC 1 cut(s) 508
Psp1406I AACGTT 1 cut(s) 419
PspN4I GGNNCC 1 cut(s) 507
PstI CTGCAG 2 cut(s) 156, 210
RsaI GTAC 4 cut(s) 8, 77, 323, 465
RsaNI GTAC 4 cut(s) 7, 76, 322, 464
SaqAI TTAA 1 cut(s) 105
SatI GCNGC 2 cut(s) 209, 250
Sau3AI GATC 1 cut(s) 190
SchI GAGTC 1 cut(s) 508
ScrFI CCNGG 1 cut(s) 503
SetI ASST 4 cut(s) 295, 343, 408, 422
SfaNI GCATC 1 cut(s) 324
SfcI CTRYAG 2 cut(s) 152, 206
SmlI CTYRAG 2 cut(s) 35, 186
SmoI CTYRAG 2 cut(s) 35, 186
SpeI ACTAGT 1 cut(s) 62
Sse9I AATT 2 cut(s) 53, 390
SsiI CCGC 3 cut(s) 13, 92, 141
SspI AATATT 1 cut(s) 304
SspMI CTAG 5 cut(s) 63, 131, 290, 338, 510
StyD4I CCNGG 1 cut(s) 501
StyI CCWWGG 2 cut(s) 488, 509
TaaI ACNGT 3 cut(s) 80, 281, 321
TaiI ACGT 1 cut(s) 422
TasI AATT 2 cut(s) 53, 390
TatI WGTACW 1 cut(s) 6
Tru1I TTAA 1 cut(s) 105
Tru9I TTAA 1 cut(s) 105
TscAI CASTG 2 cut(s) 286, 473
TseI GCWGC 2 cut(s) 208, 249
TspDTI ATGAA 1 cut(s) 73
TspRI CASTG 2 cut(s) 286, 473
XapI RAATTY 1 cut(s) 53
XceI RCATGY 1 cut(s) 402
XmaJI CCTAGG 1 cut(s) 509
XmnI GAANNNNTTC 1 cut(s) 177
XspI CTAG 5 cut(s) 63, 131, 290, 338, 510
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.