FvH4_6g02021

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000270
Physical Location & Seq
Forward (+)
1163133 .. 1164794
1662 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g02021.t1

Sequence Viewer

Length: 975 bp
ATGTGTAGCACTAGTGATGTCATTGATAAATGTCGTTTCATTGATTCACCTACCCCCGACGTGCGTACTTCCAATTTCCATATAGGTGTTTGTCGAGGGCGTTTGCAGATGTGCCCGTTTTCCTTTCATAGTCGTCGTTGTGATACTATGGCTATTTGGGAGTTGAAAGAAAATGAAGTGGATGGCAAACCAGAATGGTGTTTACTTCATCAAATGTCTTCTCTGTCAGAGATGGTTCCTAAACAACCTCTCAGCATCTCAAGCTTTCACATAGTAGGTTTTCACCCAATTTATAGGGACATAGTGTATTTAGAACATAGCGACGTATATAGTGATGAGCCAAGATACATAGTCATGTGCAATGTTCGTGAAAGAACCTTAGAGATAGCAGCGAAAATTCCATTTGAGAATAGTCATGGAGTGCCTTGGGTCGCTGAGGGGATTTGCCCCTATGTGATCCCATGGTGGCCAACACCAGTTCAAGCAAGGCTGAACTATCGTGAAGAATGCCTCAACATAACTATGATTGGTGTAGACACCTTTACTGTTAAGGTCGGTTGCTTAAGTAGTGTTAAGCAATTGAAACAAAAACTTGAAGAAGAAAAAGGGCAGGGGCAGTATGAGCTGCTGCATTTTACTGGGCGAGTTTTAGAAGATGATGACAAGTGGCTTACGGATTATGGAATTAAGGACAAATCTTCTCTATCACCGTCATCTTTCAAATTGTTGATTTTCCCTCGGAAAGAAAATCAAAAGATGCAACTTTGTGTGTCACTCTCCCACGGCCATATGGCACTCAAATCTGCCGCCGATTCAACATTTCTCCTCCGGCGGCGAGGCCCCTATTCGTCGGCATTGATGGCCCATGACGGCGCCTCCTCGGAGCTTGTAAATCCCGGCGGAATCCGAGCCTCTCCGGTTGTCGACACTTTAGCTCCCGTGAGGGGCTTGGAAGCTAAATCAATGGACGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

325

Amino Acids

36.64

Weight (kDa)

6.42

Isoelectric Point (pI)

38.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 172 - 235 1.8e-07 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 872
AccI GTMKAC 2 cut(s) 534, 924
AciI CCGC 3 cut(s) 807, 832, 900
AclWI GGATC 1 cut(s) 451
AcoI YGGCCR 2 cut(s) 467, 784
AcsI RAATTY 1 cut(s) 396
AcyI GRCGYC 1 cut(s) 873
AfaI GTAC 1 cut(s) 67
AfiI CCNNNNNNNGG 1 cut(s) 944
AflII CTTAAG 1 cut(s) 562
AgsI TTSAA 6 cut(s) 166, 482, 583, 596, 721, 816
AhlI ACTAGT 1 cut(s) 11
AjiI CACGTC 1 cut(s) 61
AluBI AGCT 5 cut(s) 264, 625, 886, 935, 956
AluI AGCT 5 cut(s) 264, 625, 886, 935, 956
AlwI GGATC 1 cut(s) 451
AoxI GGCC 4 cut(s) 467, 784, 838, 861
ApeKI GCWGC 3 cut(s) 389, 625, 628
ApoI RAATTY 1 cut(s) 396
AspLEI GCGC 1 cut(s) 875
AspS9I GGNCC 2 cut(s) 839, 862
AsuC2I CCSGG 1 cut(s) 897
AsuHPI GGTGA 3 cut(s) 39, 275, 699
BaeGI GKGCMC 1 cut(s) 116
BalI TGGCCA 1 cut(s) 469
BanI GGYRCC 1 cut(s) 872
BbsI GAAGAC 1 cut(s) 210
BbvCI CCTCAGC 1 cut(s) 435
BbvI GCAGC 3 cut(s) 401, 612, 615
BccI CCATC 3 cut(s) 176, 226, 853
BceAI ACGGC 2 cut(s) 799, 886
BcnI CCSGG 1 cut(s) 897
BcuI ACTAGT 1 cut(s) 11
BfaI CTAG 1 cut(s) 12
BfoI RGCGCY 1 cut(s) 876
BfrI CTTAAG 1 cut(s) 562
BisI GCNGC 5 cut(s) 390, 626, 629, 807, 833
BlsI GCNGC 5 cut(s) 391, 627, 630, 808, 834
Bme1390I CCNGG 1 cut(s) 897
BmgBI CACGTC 1 cut(s) 61
BmgT120I GGNCC 2 cut(s) 839, 862
BmiI GGNNCC 3 cut(s) 237, 841, 874
BmrFI CCNGG 1 cut(s) 897
BmrI ACTGGG 1 cut(s) 648
BmsI GCATC 2 cut(s) 264, 747
BmuI ACTGGG 1 cut(s) 648
BpiI GAAGAC 1 cut(s) 210
Bpu10I CCTNAGC 1 cut(s) 435
BpuEI CTTGAG 1 cut(s) 244
BpuMI CCSGG 1 cut(s) 897
BsaHI GRCGYC 1 cut(s) 873
BsaJI CCNNGG 5 cut(s) 425, 461, 737, 781, 879
BsaWI WCCGGW 1 cut(s) 916
BsaXI ACNNNNNCTCC 4 cut(s) 860, 890, 919, 949
Bsc4I CCNNNNNNNGG 1 cut(s) 944
Bse1I ACTGG 2 cut(s) 476, 643
Bse3DI GCAATG 1 cut(s) 367
BseDI CCNNGG 5 cut(s) 425, 461, 737, 781, 879
BseGI GGATG 1 cut(s) 187
BseLI CCNNNNNNNGG 1 cut(s) 944
BseMI GCAATG 1 cut(s) 367
BseMII CTCAG 2 cut(s) 265, 426
BseNI ACTGG 2 cut(s) 476, 643
BseRI GAGGAG 2 cut(s) 815, 868
BseSI GKGCMC 1 cut(s) 116
BseXI GCAGC 3 cut(s) 401, 612, 615
BshFI GGCC 4 cut(s) 469, 786, 840, 863
BshNI GGYRCC 1 cut(s) 872
BsiSI CCGG 3 cut(s) 829, 897, 917
BslFI GGGAC 1 cut(s) 311
BslI CCNNNNNNNGG 1 cut(s) 944
BsmFI GGGAC 1 cut(s) 311
BsmI GAATGC 1 cut(s) 512
BsnI GGCC 4 cut(s) 469, 786, 840, 863
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 1 cut(s) 456
Bsp19I CCATGG 1 cut(s) 461
BspACI CCGC 3 cut(s) 807, 832, 900
BspANI GGCC 4 cut(s) 469, 786, 840, 863
BspCNI CTCAG 2 cut(s) 264, 427
BspLI GGNNCC 3 cut(s) 237, 841, 874
BspPI GGATC 1 cut(s) 451
BspT107I GGYRCC 1 cut(s) 872
BspTI CTTAAG 1 cut(s) 562
BsrDI GCAATG 1 cut(s) 367
BsrI ACTGG 2 cut(s) 476, 643
BssECI CCNNGG 5 cut(s) 425, 461, 737, 781, 879
BssMI GATC 1 cut(s) 456
BssNI GRCGYC 1 cut(s) 873
BssT1I CCWWGG 2 cut(s) 425, 461
Bst4CI ACNGT 2 cut(s) 547, 711
BstACI GRCGYC 1 cut(s) 873
BstAFI CTTAAG 1 cut(s) 562
BstDEI CTNAG 3 cut(s) 251, 379, 435
BstDSI CCRYGG 2 cut(s) 461, 781
BstF5I GGATG 1 cut(s) 187
BstH2I RGCGCY 1 cut(s) 876
BstHHI GCGC 1 cut(s) 875
BstKTI GATC 1 cut(s) 459
BstMBI GATC 1 cut(s) 456
BstMWI GCNNNNNNNGC 3 cut(s) 261, 622, 860
BstSCI CCNGG 1 cut(s) 895
BstSLI GKGCMC 1 cut(s) 116
BstV1I GCAGC 3 cut(s) 401, 612, 615
BstV2I GAAGAC 1 cut(s) 210
BsuRI GGCC 4 cut(s) 469, 786, 840, 863
BtgI CCRYGG 2 cut(s) 461, 781
BtrI CACGTC 1 cut(s) 61
BtsCI GGATG 1 cut(s) 187
CfoI GCGC 1 cut(s) 875
Cfr13I GGNCC 2 cut(s) 839, 862
Csp6I GTAC 1 cut(s) 66
CviAII CATG 4 cut(s) 355, 416, 462, 866
CviQI GTAC 1 cut(s) 66
DdeI CTNAG 3 cut(s) 251, 379, 435
DinI GGCGCC 1 cut(s) 874
DpnI GATC 1 cut(s) 458
DpnII GATC 1 cut(s) 456
EaeI YGGCCR 2 cut(s) 467, 784
EciI GGCGGA 1 cut(s) 915
Eco130I CCWWGG 2 cut(s) 425, 461
EcoO109I RGGNCCY 1 cut(s) 839
EcoT14I CCWWGG 2 cut(s) 425, 461
EgeI GGCGCC 1 cut(s) 874
EheI GGCGCC 1 cut(s) 874
ErhI CCWWGG 2 cut(s) 425, 461
FaeI CATG 4 cut(s) 358, 419, 465, 869
FaqI GGGAC 1 cut(s) 311
FatI CATG 4 cut(s) 354, 415, 461, 865
FauNDI CATATG 1 cut(s) 789
FblI GTMKAC 2 cut(s) 534, 924
Fnu4HI GCNGC 5 cut(s) 390, 626, 629, 807, 833
FokI GGATG 1 cut(s) 194
Fsp4HI GCNGC 5 cut(s) 390, 626, 629, 807, 833
FspBI CTAG 1 cut(s) 12
GlaI GCGC 1 cut(s) 874
GluI GCNGC 5 cut(s) 390, 626, 629, 807, 833
HaeII RGCGCY 1 cut(s) 876
HaeIII GGCC 4 cut(s) 469, 786, 840, 863
HapII CCGG 3 cut(s) 829, 897, 917
HhaI GCGC 1 cut(s) 875
Hin1I GRCGYC 1 cut(s) 873
Hin1II CATG 4 cut(s) 358, 419, 465, 869
Hin6I GCGC 1 cut(s) 873
HinP1I GCGC 1 cut(s) 873
HincII GTYRAC 1 cut(s) 925
HindII GTYRAC 1 cut(s) 925
HindIII AAGCTT 1 cut(s) 262
HinfI GANTC 3 cut(s) 44, 812, 903
HpaII CCGG 3 cut(s) 829, 897, 917
HphI GGTGA 3 cut(s) 39, 275, 699
Hpy166II GTNNAC 3 cut(s) 203, 535, 925
Hpy188I TCNGA 4 cut(s) 229, 741, 883, 908
Hpy188III TCNNGA 2 cut(s) 368, 500
Hpy8I GTNNAC 3 cut(s) 203, 535, 925
Hpy99I CGWCG 4 cut(s) 62, 138, 326, 853
HpyCH4III ACNGT 2 cut(s) 547, 711
HpyCH4IV ACGT 2 cut(s) 60, 324
HpyCH4V TGCA 4 cut(s) 106, 360, 631, 760
HpyF10VI GCNNNNNNNGC 3 cut(s) 261, 622, 860
HpyF3I CTNAG 3 cut(s) 251, 379, 435
HpySE526I ACGT 2 cut(s) 60, 324
Hsp92I GRCGYC 1 cut(s) 873
Hsp92II CATG 4 cut(s) 358, 419, 465, 869
HspAI GCGC 1 cut(s) 873
KasI GGCGCC 1 cut(s) 872
Kzo9I GATC 1 cut(s) 456
LmnI GCTCC 2 cut(s) 883, 940
LpnPI CCDG 7 cut(s) 204, 489, 596, 624, 842, 910, 930
Lsp1109I GCAGC 3 cut(s) 401, 612, 615
LweI GCATC 2 cut(s) 264, 747
MaeI CTAG 1 cut(s) 12
MaeII ACGT 2 cut(s) 60, 324
MaeIII GTNAC 1 cut(s) 771
MalI GATC 1 cut(s) 458
MboI GATC 1 cut(s) 456
MboII GAAGA 6 cut(s) 210, 515, 608, 611, 665, 690
MfeI CAATTG 1 cut(s) 578
MhlI GDGCHC 1 cut(s) 116
MlsI TGGCCA 1 cut(s) 469
MluCI AATT 6 cut(s) 73, 288, 396, 578, 684, 722
MluNI TGGCCA 1 cut(s) 469
Mly113I GGCGCC 1 cut(s) 873
Mox20I TGGCCA 1 cut(s) 469
MscI TGGCCA 1 cut(s) 469
MseI TTAA 4 cut(s) 549, 563, 573, 687
MslI CAYNNNNRTG 3 cut(s) 84, 353, 521
Msp20I TGGCCA 1 cut(s) 469
MspCI CTTAAG 1 cut(s) 562
MspI CCGG 3 cut(s) 829, 897, 917
MspR9I CCNGG 1 cut(s) 897
MunI CAATTG 1 cut(s) 578
Mva1269I GAATGC 1 cut(s) 512
MwoI GCNNNNNNNGC 3 cut(s) 261, 622, 860
NarI GGCGCC 1 cut(s) 873
NciI CCSGG 1 cut(s) 897
NcoI CCATGG 1 cut(s) 461
NdeI CATATG 1 cut(s) 789
NdeII GATC 1 cut(s) 456
NlaIII CATG 4 cut(s) 358, 419, 465, 869
NlaIV GGNNCC 3 cut(s) 237, 841, 874
NmuCI GTSAC 1 cut(s) 771
PctI GAATGC 1 cut(s) 512
PfeI GAWTC 3 cut(s) 44, 812, 903
PkrI GCNGC 5 cut(s) 391, 627, 630, 808, 834
PluTI GGCGCC 1 cut(s) 876
PspN4I GGNNCC 3 cut(s) 237, 841, 874
PspPI GGNCC 2 cut(s) 839, 862
RsaI GTAC 1 cut(s) 67
RsaNI GTAC 1 cut(s) 66
RseI CAYNNNNRTG 3 cut(s) 84, 353, 521
SalI GTCGAC 1 cut(s) 923
SaqAI TTAA 4 cut(s) 549, 563, 573, 687
SatI GCNGC 5 cut(s) 390, 626, 629, 807, 833
Sau3AI GATC 1 cut(s) 456
Sau96I GGNCC 2 cut(s) 839, 862
ScrFI CCNGG 1 cut(s) 897
SduI GDGCHC 1 cut(s) 116
SfaNI GCATC 2 cut(s) 264, 747
SfoI GGCGCC 1 cut(s) 874
SmiMI CAYNNNNRTG 3 cut(s) 84, 353, 521
SmlI CTYRAG 2 cut(s) 259, 562
SmoI CTYRAG 2 cut(s) 259, 562
SpeI ACTAGT 1 cut(s) 11
Sse9I AATT 6 cut(s) 73, 288, 396, 578, 684, 722
SsiI CCGC 3 cut(s) 807, 832, 900
SspDI GGCGCC 1 cut(s) 872
SspMI CTAG 1 cut(s) 12
StyD4I CCNGG 1 cut(s) 895
StyI CCWWGG 2 cut(s) 425, 461
TaaI ACNGT 2 cut(s) 547, 711
TaiI ACGT 2 cut(s) 63, 327
TaqI TCGA 2 cut(s) 94, 924
TasI AATT 6 cut(s) 73, 288, 396, 578, 684, 722
TauI GCSGC 2 cut(s) 809, 835
TfiI GAWTC 3 cut(s) 44, 812, 903
Tru1I TTAA 4 cut(s) 549, 563, 573, 687
Tru9I TTAA 4 cut(s) 549, 563, 573, 687
TseFI GTSAC 1 cut(s) 771
TseI GCWGC 3 cut(s) 389, 625, 628
Tsp45I GTSAC 1 cut(s) 771
TspDTI ATGAA 4 cut(s) 28, 116, 189, 197
TspGWI ACGGA 1 cut(s) 689
Vha464I CTTAAG 1 cut(s) 562
XapI RAATTY 1 cut(s) 396
XmiI GTMKAC 2 cut(s) 534, 924
XspI CTAG 1 cut(s) 12
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.