Rroxscaffold_6G00427700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000270
Physical Location & Seq
Forward (+)
48263319 .. 48264854
1536 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00427700.1

Sequence Viewer

Length: 1536 bp
ATGTCTCACCAGCAAGTTTCCACCGCCGCCGCCGCCGCCGCCGCCGTCCCTAGTGGTGACAACTCTACCACAGGAAGGCAAAAAAGAGGTACTACTAGTCCATATCAGTCCGTCTTTAAAAAAGCCAAGAGATCATCAGACTCTGTAACTAATTCACCACCATCATTGGAAACCACGATTGATGATCTCCCTGACTTTGTACTGGTCGAAATCCTTTGTCGACTTCTTTACAATGTTAAGCTTGTTTTTCAATGCAAGTGTGTGTCTAGGCGCTGGTTTACTCTCATCTCTAATTCATATTTCATTACCCGATTTTTATGTCAGCATCATAGGCAACAAAAGTCTTTCGCGACTACTAATTATGTTATGTTCCCTTATAAGGATAACAAAATTGTACCCCTTACCTCGTCTTCCATTCTTCCAAGCTCTTTGTCATTGAGTTTCCTCCCTTGTTTTGAATCTCCTAACCAAGATAACGAGCCAATTGTGGAAGCAATTTTTGATGACTTGGTCTTGTGCTGTGCAACCAAGAACTATCAATACTATTACTACATCTGCAATCCACTCACTAGGCAATGGGTTGCTCTTCCCCCTGTCCCTCAAGTCATCAAGTTGAAAGTACCAGTTGGGTTCATTTGTGAACCCTACTGTGATCATGGAAGAGAAGAACAAAATAGTGCCGGAAGTAGTAGTAGCTCTATCATGAAGCTTAATACCGGGTATAGGTGCAGGGTTGTGCGAATACTCCCAAATACAATACGTCAACCAGAACTGGGTTTCTCTGTGGAGATCTTCTCTTCTGAGACAGGTGAATGGAGAGAGTATCAGTTGCCTAATCTAATAAAAAAGTTTGGTTGGTTCATTGCTTGGAGGCCTGGCGTTGCTTGCAATGGCAAGTTATATTGGTACAATGATGGTGGCTTTACTTTTGAGTTGGATCCGTTCAATATTAGTGCTAGCGGTTTTACTTCTAGTGCTATTATTGACAAATGTCGTTTCACTAAAACGCCGAGAAAGTGCTTCCATCTAGGTGTGTGCCAAGGGCGTTTGCGTATGTACCCATTTTCCATAATGGAAACTATTAGTATGTGGGAACTGAAAGAAAATTCAGGCAACTTGGAATGGTGTTTGATATTTGACAGAGTTCCTATGTTGGATATGGTTTCCCAAGATCCTAAGATCACTAAAGAAAAATCGGGCAAATTGGACGTGCTAGGTTTCCACCCAAGCAATGAGGATGTCGTGTATTTGAAATTTCCTGAGCATATAATCATGTGCAATCTTCGCAAAAAGACGTTAGAAAAGAGTCCGGTTGATCCCCATACAAACATTCAATTTGATTTCAGTTGCAATGTTGACGAAAAGTGGTTTTCATTTGATCGCCCTACAAATATTTATCCATATGTGCTTCCATGGTGGCCTACACCAGTTCCTAAAATCAATAAACCGAAGGTGCGCCAGATCAAGGTCTTGAACCAGTTTGAGATAATCCTACCTTCAGACAGCCTCTTAATTGTGTCGTCCAAAACTTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

511

Amino Acids

58.53

Weight (kDa)

8.79

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 140 - 478 7.5e-16 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 378
AccI GTMKAC 1 cut(s) 220
AccII CGCG 1 cut(s) 350
AciI CCGC 8 cut(s) 24, 27, 30, 33, 36, 39, 42, 960
AclWI GGATC 4 cut(s) 932, 945, 1166, 1310
AcsI RAATTY 2 cut(s) 1105, 1253
AcuI CTGAAG 1 cut(s) 1482
AfaI GTAC 6 cut(s) 91, 201, 396, 621, 908, 1058
AfiI CCNNNNNNNGG 5 cut(s) 75, 379, 723, 773, 1465
AgsI TTSAA 7 cut(s) 251, 458, 616, 946, 1252, 1334, 1474
AhlI ACTAGT 1 cut(s) 95
AjiI CACGTC 1 cut(s) 1210
AjnI CCWGG 1 cut(s) 874
AluBI AGCT 4 cut(s) 241, 426, 696, 709
AluI AGCT 4 cut(s) 241, 426, 696, 709
Alw26I GTCTC 2 cut(s) 9, 797
AlwI GGATC 4 cut(s) 932, 945, 1166, 1310
AlwNI CAGNNNCTG 1 cut(s) 143
AoxI GGCC 2 cut(s) 872, 1418
ApoI RAATTY 2 cut(s) 1105, 1253
AspLEI GCGC 2 cut(s) 273, 1458
AsuC2I CCSGG 1 cut(s) 718
AsuHPI GGTGA 3 cut(s) 68, 147, 821
AsuNHI GCTAGC 1 cut(s) 956
BamHI GGATCC 1 cut(s) 937
BbsI GAAGAC 1 cut(s) 402
BccI CCATC 3 cut(s) 169, 908, 1032
BceAI ACGGC 1 cut(s) 29
BciT130I CCWGG 1 cut(s) 876
BclI TGATCA 1 cut(s) 652
BcnI CCSGG 1 cut(s) 718
BcoDI GTCTC 2 cut(s) 9, 797
BcuI ACTAGT 1 cut(s) 95
BfaI CTAG 8 cut(s) 51, 96, 267, 570, 957, 972, 1028, 1214
BfoI RGCGCY 1 cut(s) 274
BglII AGATCT 1 cut(s) 789
BisI GCNGC 6 cut(s) 27, 30, 33, 36, 39, 42
BlsI GCNGC 6 cut(s) 28, 31, 34, 37, 40, 43
Bme1390I CCNGG 2 cut(s) 718, 876
BmgBI CACGTC 1 cut(s) 1210
BmiI GGNNCC 1 cut(s) 939
BmrFI CCNGG 2 cut(s) 718, 876
BmrI ACTGGG 1 cut(s) 782
BmsI GCATC 1 cut(s) 334
BmtI GCTAGC 1 cut(s) 960
BmuI ACTGGG 1 cut(s) 782
BoxI GACNNNNGTC 1 cut(s) 990
BpiI GAAGAC 1 cut(s) 402
BplI GAGNNNNNCTC 2 cut(s) 779, 811
Bpu10I CCTNAGC 1 cut(s) 1260
BpuEI CTTGAG 1 cut(s) 585
BpuMI CCSGG 1 cut(s) 718
BsaJI CCNNGG 2 cut(s) 1039, 1412
BsaWI WCCGGW 1 cut(s) 1309
Bsc4I CCNNNNNNNGG 5 cut(s) 75, 379, 723, 773, 1465
Bse1I ACTGG 5 cut(s) 207, 623, 777, 1427, 1477
Bse3DI GCAATG 5 cut(s) 581, 861, 895, 1237, 1357
BseBI CCWGG 1 cut(s) 876
BseDI CCNNGG 2 cut(s) 1039, 1412
BseGI GGATG 1 cut(s) 1243
BseLI CCNNNNNNNGG 5 cut(s) 75, 379, 723, 773, 1465
BseMI GCAATG 5 cut(s) 581, 861, 895, 1237, 1357
BseMII CTCAG 2 cut(s) 792, 1251
BseNI ACTGG 5 cut(s) 207, 623, 777, 1427, 1477
BsgI GTGCAG 1 cut(s) 748
Bsh1236I CGCG 1 cut(s) 350
BshFI GGCC 2 cut(s) 874, 1420
BsiSI CCGG 3 cut(s) 681, 717, 1310
BslFI GGGAC 2 cut(s) 32, 581
BslI CCNNNNNNNGG 5 cut(s) 75, 379, 723, 773, 1465
BsmAI GTCTC 2 cut(s) 9, 797
BsmFI GGGAC 2 cut(s) 32, 581
BsnI GGCC 2 cut(s) 874, 1420
Bsp19I CCATGG 1 cut(s) 1412
Bsp68I TCGCGA 1 cut(s) 350
BspACI CCGC 8 cut(s) 24, 27, 30, 33, 36, 39, 42, 960
BspANI GGCC 2 cut(s) 874, 1420
BspCNI CTCAG 2 cut(s) 793, 1252
BspFNI CGCG 1 cut(s) 350
BspHI TCATGA 2 cut(s) 702, 1532
BspLI GGNNCC 1 cut(s) 939
BspOI GCTAGC 1 cut(s) 960
BspPI GGATC 4 cut(s) 932, 945, 1166, 1310
BspQI GCTCTTC 1 cut(s) 591
BsrDI GCAATG 5 cut(s) 581, 861, 895, 1237, 1357
BsrI ACTGG 5 cut(s) 207, 623, 777, 1427, 1477
BssECI CCNNGG 2 cut(s) 1039, 1412
BssT1I CCWWGG 2 cut(s) 1039, 1412
Bst2UI CCWGG 1 cut(s) 876
Bst4CI ACNGT 1 cut(s) 650
Bst6I CTCTTC 3 cut(s) 591, 655, 802
BstC8I GCNNGC 2 cut(s) 886, 958
BstDEI CTNAG 3 cut(s) 801, 1176, 1260
BstDSI CCRYGG 1 cut(s) 1412
BstF5I GGATG 1 cut(s) 1243
BstFNI CGCG 1 cut(s) 350
BstH2I RGCGCY 1 cut(s) 274
BstHHI GCGC 2 cut(s) 273, 1458
BstMAI GTCTC 2 cut(s) 9, 797
BstMWI GCNNNNNNNGC 7 cut(s) 32, 35, 38, 41, 331, 885, 1284
BstNI CCWGG 1 cut(s) 876
BstPAI GACNNNNGTC 1 cut(s) 990
BstSCI CCNGG 2 cut(s) 716, 874
BstUI CGCG 1 cut(s) 350
BstV2I GAAGAC 1 cut(s) 402
BstX2I RGATCY 3 cut(s) 789, 937, 1171
BstYI RGATCY 3 cut(s) 789, 937, 1171
BsuRI GGCC 2 cut(s) 874, 1420
BtgI CCRYGG 1 cut(s) 1412
BtrI CACGTC 1 cut(s) 1210
BtsCI GGATG 1 cut(s) 1243
BtuMI TCGCGA 1 cut(s) 350
Cac8I GCNNGC 2 cut(s) 886, 958
CaiI CAGNNNCTG 1 cut(s) 143
CciI TCATGA 2 cut(s) 702, 1532
CfoI GCGC 2 cut(s) 273, 1458
Csp6I GTAC 6 cut(s) 90, 200, 395, 620, 907, 1057
CspCI CAANNNNNGTGG 4 cut(s) 147, 182, 898, 933
CviAII CATG 5 cut(s) 656, 703, 1273, 1413, 1533
CviQI GTAC 6 cut(s) 90, 200, 395, 620, 907, 1057
DdeI CTNAG 3 cut(s) 801, 1176, 1260
DraI TTTAAA 1 cut(s) 118
Eam1104I CTCTTC 3 cut(s) 591, 655, 802
EarI CTCTTC 3 cut(s) 591, 655, 802
Eco130I CCWWGG 2 cut(s) 1039, 1412
Eco147I AGGCCT 1 cut(s) 874
Eco57I CTGAAG 1 cut(s) 1482
EcoRII CCWGG 1 cut(s) 874
EcoT14I CCWWGG 2 cut(s) 1039, 1412
ErhI CCWWGG 2 cut(s) 1039, 1412
FaeI CATG 5 cut(s) 659, 706, 1276, 1416, 1536
FaqI GGGAC 2 cut(s) 32, 581
FatI CATG 5 cut(s) 655, 702, 1272, 1412, 1532
FauNDI CATATG 1 cut(s) 1402
FbaI TGATCA 1 cut(s) 652
FblI GTMKAC 1 cut(s) 220
Fnu4HI GCNGC 6 cut(s) 27, 30, 33, 36, 39, 42
FokI GGATG 1 cut(s) 1250
Fsp4HI GCNGC 6 cut(s) 27, 30, 33, 36, 39, 42
FspBI CTAG 8 cut(s) 51, 96, 267, 570, 957, 972, 1028, 1214
GlaI GCGC 2 cut(s) 272, 1457
GluI GCNGC 6 cut(s) 27, 30, 33, 36, 39, 42
HaeII RGCGCY 1 cut(s) 274
HaeIII GGCC 2 cut(s) 874, 1420
HapII CCGG 3 cut(s) 681, 717, 1310
HhaI GCGC 2 cut(s) 273, 1458
Hin1II CATG 5 cut(s) 659, 706, 1276, 1416, 1536
Hin6I GCGC 2 cut(s) 271, 1456
HinP1I GCGC 2 cut(s) 271, 1456
HincII GTYRAC 3 cut(s) 221, 764, 1357
HindII GTYRAC 3 cut(s) 221, 764, 1357
HindIII AAGCTT 2 cut(s) 239, 707
HinfI GANTC 3 cut(s) 140, 458, 1306
HpaII CCGG 3 cut(s) 681, 717, 1310
HphI GGTGA 3 cut(s) 68, 147, 821
Hpy166II GTNNAC 5 cut(s) 221, 279, 641, 764, 1357
Hpy188I TCNGA 3 cut(s) 139, 802, 1501
Hpy188III TCNNGA 5 cut(s) 349, 703, 1259, 1471, 1533
Hpy8I GTNNAC 5 cut(s) 221, 279, 641, 764, 1357
HpyAV CCTTC 3 cut(s) 69, 1444, 1506
HpyCH4III ACNGT 1 cut(s) 650
HpyCH4IV ACGT 3 cut(s) 760, 1209, 1295
HpyCH4V TGCA 7 cut(s) 255, 524, 558, 729, 888, 1278, 1350
HpyF10VI GCNNNNNNNGC 7 cut(s) 32, 35, 38, 41, 331, 885, 1284
HpyF3I CTNAG 3 cut(s) 801, 1176, 1260
HpySE526I ACGT 3 cut(s) 760, 1209, 1295
Hsp92II CATG 5 cut(s) 659, 706, 1276, 1416, 1536
HspAI GCGC 2 cut(s) 271, 1456
Ksp22I TGATCA 1 cut(s) 652
LguI GCTCTTC 1 cut(s) 591
LweI GCATC 1 cut(s) 334
MaeI CTAG 8 cut(s) 51, 96, 267, 570, 957, 972, 1028, 1214
MaeII ACGT 3 cut(s) 760, 1209, 1295
MaeIII GTNAC 2 cut(s) 56, 145
MboII GAAGA 8 cut(s) 402, 410, 578, 672, 677, 784, 789, 1274
MfeI CAATTG 1 cut(s) 483
MflI RGATCY 3 cut(s) 789, 937, 1171
MlyI GAGTC 2 cut(s) 134, 1315
MmeI TCCRAC 2 cut(s) 915, 1134
MnlI CCTC 7 cut(s) 80, 415, 455, 609, 864, 1228, 1517
MseI TTAA 4 cut(s) 117, 237, 711, 1511
MslI CAYNNNNRTG 1 cut(s) 1029
MspI CCGG 3 cut(s) 681, 717, 1310
MspR9I CCNGG 2 cut(s) 718, 876
MunI CAATTG 1 cut(s) 483
MvaI CCWGG 1 cut(s) 876
MvnI CGCG 1 cut(s) 350
MwoI GCNNNNNNNGC 7 cut(s) 32, 35, 38, 41, 331, 885, 1284
NciI CCSGG 1 cut(s) 718
NcoI CCATGG 1 cut(s) 1412
NdeI CATATG 1 cut(s) 1402
NheI GCTAGC 1 cut(s) 956
NlaIII CATG 5 cut(s) 659, 706, 1276, 1416, 1536
NlaIV GGNNCC 1 cut(s) 939
NmeAIII GCCGAG 1 cut(s) 1035
NmuCI GTSAC 1 cut(s) 56
NruI TCGCGA 1 cut(s) 350
PagI TCATGA 2 cut(s) 702, 1532
PceI AGGCCT 1 cut(s) 874
PciSI GCTCTTC 1 cut(s) 591
PfeI GAWTC 1 cut(s) 458
PflFI GACNNNGTC 1 cut(s) 509
PkrI GCNGC 6 cut(s) 28, 31, 34, 37, 40, 43
PleI GAGTC 2 cut(s) 134, 1314
PpsI GAGTC 2 cut(s) 134, 1314
PshAI GACNNNNGTC 1 cut(s) 990
PsiI TTATAA 1 cut(s) 378
Psp6I CCWGG 1 cut(s) 874
PspGI CCWGG 1 cut(s) 874
PspN4I GGNNCC 1 cut(s) 939
PsrI GAACNNNNNNTAC 2 cut(s) 524, 556
PstNI CAGNNNCTG 1 cut(s) 143
PsuI RGATCY 3 cut(s) 789, 937, 1171
PsyI GACNNNGTC 1 cut(s) 509
RruI TCGCGA 1 cut(s) 350
RsaI GTAC 6 cut(s) 91, 201, 396, 621, 908, 1058
RsaNI GTAC 6 cut(s) 90, 200, 395, 620, 907, 1057
RseI CAYNNNNRTG 1 cut(s) 1029
SalI GTCGAC 1 cut(s) 219
SapI GCTCTTC 1 cut(s) 591
SaqAI TTAA 4 cut(s) 117, 237, 711, 1511
SatI GCNGC 6 cut(s) 27, 30, 33, 36, 39, 42
SchI GAGTC 2 cut(s) 134, 1315
ScrFI CCNGG 2 cut(s) 718, 876
SfaNI GCATC 1 cut(s) 334
SmiMI CAYNNNNRTG 1 cut(s) 1029
SmlI CTYRAG 1 cut(s) 600
SmoI CTYRAG 1 cut(s) 600
SpeI ACTAGT 1 cut(s) 95
SseBI AGGCCT 1 cut(s) 874
SsiI CCGC 8 cut(s) 24, 27, 30, 33, 36, 39, 42, 960
SspI AATATT 2 cut(s) 949, 1393
SspMI CTAG 8 cut(s) 51, 96, 267, 570, 957, 972, 1028, 1214
StuI AGGCCT 1 cut(s) 874
StyD4I CCNGG 2 cut(s) 716, 874
StyI CCWWGG 2 cut(s) 1039, 1412
TaaI ACNGT 1 cut(s) 650
TaiI ACGT 3 cut(s) 763, 1212, 1298
TaqI TCGA 2 cut(s) 207, 220
TatI WGTACW 1 cut(s) 199
TauI GCSGC 6 cut(s) 29, 32, 35, 38, 41, 44
TfiI GAWTC 1 cut(s) 458
Tru1I TTAA 4 cut(s) 117, 237, 711, 1511
Tru9I TTAA 4 cut(s) 117, 237, 711, 1511
TseFI GTSAC 1 cut(s) 56
Tsp45I GTSAC 1 cut(s) 56
TspDTI ATGAA 7 cut(s) 285, 292, 622, 719, 850, 1362, 1521
TspGWI ACGGA 2 cut(s) 100, 930
Tth111I GACNNNGTC 1 cut(s) 509
XapI RAATTY 2 cut(s) 1105, 1253
XmiI GTMKAC 1 cut(s) 220
XspI CTAG 8 cut(s) 51, 96, 267, 570, 957, 972, 1028, 1214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.