Rmu_ssc0000424.1_g000019

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000424.1
OG0000270
Physical Location & Seq
Reverse (-)
81952 .. 82395
444 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000424.1_g000019.1.cds

Sequence Viewer

Length: 444 bp
atgttgtactggtggagcagtaatggccttatacttgagttggatatgcccaaattcaatactagtattgctaagtaccatttcattgaaccgcctgagggttttaatagtccagcagcaggctggctaggagtaagcggagggcttttgaggttgagcatggaaggagaacttctccctcaagatcacgacgagtttctgcagccatttagagttggggagttgaaacaagttgtgaagggcagcgaaggcaaactcaaatggttagccgacagtgttcctctagcttgtaaaaacattgatgtcagcccaccgtacacatttaagatgctagctttccacccaaacaatgaggatgtcgtgtatttgactcgttaccataaaattatcacatgcaaccttcgtggaggaacgtacgctagagaaaacttcagtgttcagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

147

Amino Acids

16.68

Weight (kDa)

6.06

Isoelectric Point (pI)

52.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 92, 138
AcsI RAATTY 1 cut(s) 53
AcuI CTGAAG 1 cut(s) 415
AfaI GTAC 4 cut(s) 8, 77, 317, 416
AfiI CCNNNNNNNGG 2 cut(s) 98, 119
AgsI TTSAA 3 cut(s) 58, 89, 226
AhlI ACTAGT 1 cut(s) 62
AluBI AGCT 2 cut(s) 287, 335
AluI AGCT 2 cut(s) 287, 335
AoxI GGCC 1 cut(s) 25
ApeKI GCWGC 3 cut(s) 116, 202, 243
ApoI RAATTY 1 cut(s) 53
AsuNHI GCTAGC 1 cut(s) 331
AxyI CCTNAGG 1 cut(s) 96
BbvI GCAGC 3 cut(s) 128, 214, 255
BcuI ACTAGT 1 cut(s) 62
BfaI CTAG 5 cut(s) 63, 128, 284, 332, 420
BfmI CTRYAG 1 cut(s) 200
BisI GCNGC 3 cut(s) 117, 203, 244
BlsI GCNGC 3 cut(s) 118, 204, 245
BmsI GCATC 1 cut(s) 318
BmtI GCTAGC 1 cut(s) 335
BplI GAGNNNNNCTC 2 cut(s) 159, 191
BpuEI CTTGAG 2 cut(s) 56, 165
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 119
Bse1I ACTGG 1 cut(s) 14
Bse21I CCTNAGG 1 cut(s) 96
BseGI GGATG 1 cut(s) 361
BseLI CCNNNNNNNGG 2 cut(s) 98, 119
BseMII CTCAG 1 cut(s) 87
BseNI ACTGG 1 cut(s) 14
BseXI GCAGC 3 cut(s) 128, 214, 255
BshFI GGCC 1 cut(s) 27
BsiWI CGTACG 1 cut(s) 414
BslI CCNNNNNNNGG 2 cut(s) 98, 119
BsnI GGCC 1 cut(s) 27
Bsp143I GATC 1 cut(s) 184
BspACI CCGC 2 cut(s) 92, 138
BspANI GGCC 1 cut(s) 27
BspCNI CTCAG 1 cut(s) 88
BspMAI CTGCAG 1 cut(s) 204
BspOI GCTAGC 1 cut(s) 335
BsrI ACTGG 1 cut(s) 14
BssMI GATC 1 cut(s) 184
Bst4CI ACNGT 2 cut(s) 275, 315
BstC8I GCNNGC 3 cut(s) 121, 125, 333
BstDEI CTNAG 2 cut(s) 72, 96
BstF5I GGATG 1 cut(s) 361
BstKTI GATC 1 cut(s) 187
BstMBI GATC 1 cut(s) 184
BstMWI GCNNNNNNNGC 2 cut(s) 24, 249
BstNSI RCATGY 1 cut(s) 396
BstSFI CTRYAG 1 cut(s) 200
BstV1I GCAGC 3 cut(s) 128, 214, 255
Bsu36I CCTNAGG 1 cut(s) 96
BsuRI GGCC 1 cut(s) 27
BtsCI GGATG 1 cut(s) 361
BtsIMutI CAGTG 2 cut(s) 280, 439
Cac8I GCNNGC 3 cut(s) 121, 125, 333
Csp6I GTAC 4 cut(s) 7, 76, 316, 415
CspCI CAANNNNNGTGG 2 cut(s) 385, 420
CviAII CATG 2 cut(s) 160, 393
CviJI RGCY 9 cut(s) 27, 123, 127, 145, 205, 269, 287, 309, 335
CviKI_1 RGCY 9 cut(s) 27, 123, 127, 145, 205, 269, 287, 309, 335
CviQI GTAC 4 cut(s) 7, 76, 316, 415
DdeI CTNAG 2 cut(s) 72, 96
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
Eco57I CTGAAG 1 cut(s) 415
Eco81I CCTNAGG 1 cut(s) 96
FaeI CATG 2 cut(s) 163, 396
FaiI YATR 5 cut(s) 32, 47, 161, 381, 394
FalI AAGNNNNNCTT 2 cut(s) 156, 188
FatI CATG 2 cut(s) 159, 392
Fnu4HI GCNGC 3 cut(s) 117, 203, 244
FokI GGATG 1 cut(s) 368
Fsp4HI GCNGC 3 cut(s) 117, 203, 244
FspBI CTAG 5 cut(s) 63, 128, 284, 332, 420
GluI GCNGC 3 cut(s) 117, 203, 244
HaeIII GGCC 1 cut(s) 27
Hin1II CATG 2 cut(s) 163, 396
HinfI GANTC 1 cut(s) 370
Hpy166II GTNNAC 1 cut(s) 318
Hpy188III TCNNGA 2 cut(s) 182, 188
Hpy8I GTNNAC 1 cut(s) 318
Hpy99I CGWCG 1 cut(s) 194
HpyAV CCTTC 4 cut(s) 158, 232, 242, 410
HpyCH4III ACNGT 2 cut(s) 275, 315
HpyCH4IV ACGT 1 cut(s) 413
HpyCH4V TGCA 2 cut(s) 202, 396
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 249
HpyF3I CTNAG 2 cut(s) 72, 96
HpySE526I ACGT 1 cut(s) 413
Hsp92II CATG 2 cut(s) 163, 396
Kzo9I GATC 1 cut(s) 184
LmnI GCTCC 1 cut(s) 15
LpnPI CCDG 4 cut(s) 105, 108, 109, 126
Lsp1109I GCAGC 3 cut(s) 128, 214, 255
LweI GCATC 1 cut(s) 318
MaeI CTAG 5 cut(s) 63, 128, 284, 332, 420
MaeII ACGT 1 cut(s) 413
MaeIII GTNAC 1 cut(s) 374
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MluCI AATT 2 cut(s) 53, 384
MlyI GAGTC 1 cut(s) 364
MmeI TCCRAC 1 cut(s) 21
MnlI CCTC 7 cut(s) 91, 134, 144, 189, 291, 346, 401
MseI TTAA 2 cut(s) 105, 324
MwoI GCNNNNNNNGC 2 cut(s) 24, 249
NdeII GATC 1 cut(s) 184
NheI GCTAGC 1 cut(s) 331
NlaIII CATG 2 cut(s) 163, 396
NspI RCATGY 1 cut(s) 396
Pfl23II CGTACG 1 cut(s) 414
PkrI GCNGC 3 cut(s) 118, 204, 245
PleI GAGTC 1 cut(s) 364
PpsI GAGTC 1 cut(s) 364
PspLI CGTACG 1 cut(s) 414
PstI CTGCAG 1 cut(s) 204
RsaI GTAC 4 cut(s) 8, 77, 317, 416
RsaNI GTAC 4 cut(s) 7, 76, 316, 415
SaqAI TTAA 2 cut(s) 105, 324
SatI GCNGC 3 cut(s) 117, 203, 244
Sau3AI GATC 1 cut(s) 184
SchI GAGTC 1 cut(s) 364
SetI ASST 5 cut(s) 155, 289, 337, 402, 416
SfaNI GCATC 1 cut(s) 318
SfcI CTRYAG 1 cut(s) 200
SmlI CTYRAG 2 cut(s) 35, 180
SmoI CTYRAG 2 cut(s) 35, 180
SpeI ACTAGT 1 cut(s) 62
Sse9I AATT 2 cut(s) 53, 384
SsiI CCGC 2 cut(s) 92, 138
SspMI CTAG 5 cut(s) 63, 128, 284, 332, 420
TaaI ACNGT 2 cut(s) 275, 315
TaiI ACGT 1 cut(s) 416
TasI AATT 2 cut(s) 53, 384
TatI WGTACW 1 cut(s) 6
Tru1I TTAA 2 cut(s) 105, 324
Tru9I TTAA 2 cut(s) 105, 324
TscAI CASTG 2 cut(s) 280, 439
TseI GCWGC 3 cut(s) 116, 202, 243
TspDTI ATGAA 1 cut(s) 73
TspRI CASTG 2 cut(s) 280, 439
XapI RAATTY 1 cut(s) 53
XceI RCATGY 1 cut(s) 396
XcmI CCANNNNNNNNNTGG 1 cut(s) 120
XspI CTAG 5 cut(s) 63, 128, 284, 332, 420
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.