Rorug05G0571000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000270
Physical Location & Seq
Reverse (-)
76402443 .. 76404050
1608 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0571000.1

Sequence Viewer

Length: 246 bp
ATGGGAATAGTTCTTCTGCGAATGATGCCTAACCATCCGTTCTTATCGTGCGCTGCCTATGCTTTTGCATTTGCTATTTCAAGTCCTATTGGCGTGGTCATTGGAATCATAATAGATGCGACAACCCAAGGTGCTGTGGCAGATTGGATATTTGCGATTTCGATGGGTCTGGCGTGTGGTGTGTTTATCTATGTAGATGTAAACCATTTATTGGCGAAGGGTTACACACCCGATAACTGCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

81

Amino Acids

8.59

Weight (kDa)

5.19

Isoelectric Point (pI)

27.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zip PF02535 15 - 72 2e-11 ZIP Zinc transporter
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 211
AfiI CCNNNNNNNGG 1 cut(s) 211
AgsI TTSAA 1 cut(s) 81
ApeKI GCWGC 1 cut(s) 53
AspLEI GCGC 1 cut(s) 53
BbvI GCAGC 1 cut(s) 40
BccI CCATC 2 cut(s) 42, 157
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
BmsI GCATC 2 cut(s) 15, 106
BsaJI CCNNGG 1 cut(s) 127
Bsc4I CCNNNNNNNGG 1 cut(s) 211
BseDI CCNNGG 1 cut(s) 127
BseGI GGATG 1 cut(s) 34
BseLI CCNNNNNNNGG 1 cut(s) 211
BseXI GCAGC 1 cut(s) 40
BslI CCNNNNNNNGG 1 cut(s) 211
BssECI CCNNGG 1 cut(s) 127
BssT1I CCWWGG 1 cut(s) 127
BstF5I GGATG 1 cut(s) 34
BstHHI GCGC 1 cut(s) 53
BstMWI GCNNNNNNNGC 2 cut(s) 25, 59
BstV1I GCAGC 1 cut(s) 40
BtsCI GGATG 1 cut(s) 34
CfoI GCGC 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 127
EcoT14I CCWWGG 1 cut(s) 127
ErhI CCWWGG 1 cut(s) 127
FaiI YATR 3 cut(s) 60, 110, 192
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 1 cut(s) 21
Fsp4HI GCNGC 1 cut(s) 54
GlaI GCGC 1 cut(s) 52
GluI GCNGC 1 cut(s) 54
HhaI GCGC 1 cut(s) 53
Hin6I GCGC 1 cut(s) 51
HinP1I GCGC 1 cut(s) 51
HinfI GANTC 1 cut(s) 105
Hpy166II GTNNAC 1 cut(s) 202
Hpy8I GTNNAC 1 cut(s) 202
HpyAV CCTTC 1 cut(s) 211
HpyCH4V TGCA 2 cut(s) 68, 240
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 59
HspAI GCGC 1 cut(s) 51
LpnPI CCDG 1 cut(s) 155
Lsp1109I GCAGC 1 cut(s) 40
LweI GCATC 2 cut(s) 15, 106
MaeIII GTNAC 1 cut(s) 221
MboII GAAGA 1 cut(s) 5
MwoI GCNNNNNNNGC 2 cut(s) 25, 59
PfeI GAWTC 1 cut(s) 105
PflMI CCANNNNNTGG 1 cut(s) 211
PkrI GCNGC 1 cut(s) 55
SatI GCNGC 1 cut(s) 54
SetI ASST 1 cut(s) 133
SfaNI GCATC 2 cut(s) 15, 106
SgeI CNNG 7 cut(s) 60, 93, 106, 140, 182, 186, 242
StyI CCWWGG 1 cut(s) 127
TaqI TCGA 1 cut(s) 161
TfiI GAWTC 1 cut(s) 105
TseI GCWGC 1 cut(s) 53
TspGWI ACGGA 1 cut(s) 27
Van91I CCANNNNNTGG 1 cut(s) 211
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.