Rmu_co8159556.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8159556.1
OG0000270
Physical Location & Seq
Reverse (-)
2 .. 651
650 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8159556.1_g000001.1.cds

Sequence Viewer

Length: 650 bp
atgtcatccgagcctcctcctcctcctctgttagaagccagcatatcaagcattttctctttcctcccttgttttcaaggccatgaatatgccgagaagggcgataagctatatgtgacagggacttataatgacttggtcttgtgctcgccaactaaaactgctcaacgtgattactacatatgcaactcctacaccaaggaatggattcgtcttcctcccccccgttatagacattattctgatgatttagcagtatcggcaggattcatttgtgatccctactgcaatattaaggaagacgatactagtagcaacagcgctatcatcaaggttaatgccgagtataggtgcaggattgtgcgaatacttcctaaccaagattacaagggatttgatgtggagatatattcttccgagactggtgaatggagggagtatccatcgtctaagatattatgccaacaacgatcctatactacttttgggtgtccaagcgttgcttgcaatggaaagctgtattggctgaatgaccaaggctctgtttttgagttggatccgttcaatatttgtactggcgatgttattgataaatgtcgtttcattgatgcaccgaccccagatgcacatgatttatgttggcatatggg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

217

Amino Acids

24.75

Weight (kDa)

4.9

Isoelectric Point (pI)

43.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 129
AccB7I CCANNNNNTGG 1 cut(s) 204
AclWI GGATC 4 cut(s) 272, 465, 551, 564
AfaI GTAC 1 cut(s) 574
AfeI AGCGCT 1 cut(s) 322
AfiI CCNNNNNNNGG 2 cut(s) 204, 348
AgsI TTSAA 2 cut(s) 77, 565
AhlI ACTAGT 1 cut(s) 308
AjuI GAANNNNNNNTTGG 2 cut(s) 505, 537
AluBI AGCT 2 cut(s) 109, 517
AluI AGCT 2 cut(s) 109, 517
Alw21I GWGCWC 1 cut(s) 149
Alw26I GTCTC 1 cut(s) 413
AlwI GGATC 4 cut(s) 272, 465, 551, 564
Aor51HI AGCGCT 1 cut(s) 322
AoxI GGCC 1 cut(s) 79
Asp700I GAANNNNTTC 1 cut(s) 207
AspLEI GCGC 1 cut(s) 323
AsuHPI GGTGA 1 cut(s) 437
BamHI GGATCC 1 cut(s) 556
BbsI GAAGAC 2 cut(s) 206, 306
Bbv12I GWGCWC 1 cut(s) 149
BccI CCATC 1 cut(s) 451
BciVI GTATCC 1 cut(s) 450
BcoDI GTCTC 1 cut(s) 413
BcuI ACTAGT 1 cut(s) 308
BfaI CTAG 1 cut(s) 309
BfoI RGCGCY 1 cut(s) 324
BfuI GTATCC 1 cut(s) 450
BmiI GGNNCC 1 cut(s) 558
BmsI GCATC 2 cut(s) 598, 613
BpiI GAAGAC 2 cut(s) 206, 306
BsaJI CCNNGG 2 cut(s) 198, 535
Bsc4I CCNNNNNNNGG 2 cut(s) 204, 348
Bse1I ACTGG 2 cut(s) 427, 580
Bse3DI GCAATG 1 cut(s) 514
BseDI CCNNGG 2 cut(s) 198, 535
BseGI GGATG 1 cut(s) 5
BseLI CCNNNNNNNGG 2 cut(s) 204, 348
BseMI GCAATG 1 cut(s) 514
BseNI ACTGG 2 cut(s) 427, 580
BseRI GAGGAG 4 cut(s) 6, 9, 12, 15
BsgI GTGCAG 1 cut(s) 373
BshFI GGCC 1 cut(s) 81
BsiHKAI GWGCWC 1 cut(s) 149
BslFI GGGAC 1 cut(s) 136
BslI CCNNNNNNNGG 2 cut(s) 204, 348
BsmAI GTCTC 1 cut(s) 413
BsmFI GGGAC 1 cut(s) 136
BsnI GGCC 1 cut(s) 81
Bsp1286I GDGCHC 1 cut(s) 149
Bsp143I GATC 3 cut(s) 277, 470, 556
BspANI GGCC 1 cut(s) 81
BspLI GGNNCC 1 cut(s) 558
BspPI GGATC 4 cut(s) 272, 465, 551, 564
BsrDI GCAATG 1 cut(s) 514
BsrI ACTGG 2 cut(s) 427, 580
BssECI CCNNGG 2 cut(s) 198, 535
BssMI GATC 3 cut(s) 277, 470, 556
BssT1I CCWWGG 2 cut(s) 198, 535
BstC8I GCNNGC 3 cut(s) 40, 149, 505
BstDEI CTNAG 1 cut(s) 450
BstF5I GGATG 1 cut(s) 5
BstH2I RGCGCY 1 cut(s) 324
BstHHI GCGC 1 cut(s) 323
BstKTI GATC 3 cut(s) 280, 473, 559
BstMAI GTCTC 1 cut(s) 413
BstMBI GATC 3 cut(s) 277, 470, 556
BstMWI GCNNNNNNNGC 4 cut(s) 48, 260, 504, 523
BstV2I GAAGAC 2 cut(s) 206, 306
BstX2I RGATCY 1 cut(s) 556
BstYI RGATCY 1 cut(s) 556
BsuI GTATCC 1 cut(s) 450
BsuRI GGCC 1 cut(s) 81
BtgZI GCGATG 1 cut(s) 594
BtsCI GGATG 1 cut(s) 5
Cac8I GCNNGC 3 cut(s) 40, 149, 505
CfoI GCGC 1 cut(s) 323
Csp6I GTAC 1 cut(s) 573
CviAII CATG 2 cut(s) 83, 629
CviJI RGCY 7 cut(s) 13, 38, 81, 109, 517, 526, 540
CviKI_1 RGCY 7 cut(s) 13, 38, 81, 109, 517, 526, 540
CviQI GTAC 1 cut(s) 573
DdeI CTNAG 1 cut(s) 450
DpnI GATC 3 cut(s) 279, 472, 558
DpnII GATC 3 cut(s) 277, 470, 556
Eco130I CCWWGG 2 cut(s) 198, 535
Eco47III AGCGCT 1 cut(s) 322
EcoT14I CCWWGG 2 cut(s) 198, 535
ErhI CCWWGG 2 cut(s) 198, 535
FaeI CATG 2 cut(s) 86, 632
FalI AAGNNNNNCTT 2 cut(s) 487, 519
FaqI GGGAC 1 cut(s) 136
FatI CATG 2 cut(s) 82, 628
FauNDI CATATG 2 cut(s) 182, 645
FspBI CTAG 1 cut(s) 309
GlaI GCGC 1 cut(s) 322
HaeII RGCGCY 1 cut(s) 324
HaeIII GGCC 1 cut(s) 81
HhaI GCGC 1 cut(s) 323
Hin1II CATG 2 cut(s) 86, 632
Hin6I GCGC 1 cut(s) 321
HinP1I GCGC 1 cut(s) 321
HinfI GANTC 2 cut(s) 208, 267
HphI GGTGA 1 cut(s) 437
Hpy188I TCNGA 3 cut(s) 10, 244, 418
HpyAV CCTTC 1 cut(s) 91
HpyCH4IV ACGT 1 cut(s) 169
HpyCH4V TGCA 6 cut(s) 186, 288, 354, 507, 611, 626
HpyF10VI GCNNNNNNNGC 4 cut(s) 48, 260, 504, 523
HpyF3I CTNAG 1 cut(s) 450
HpySE526I ACGT 1 cut(s) 169
Hsp92II CATG 2 cut(s) 86, 632
HspAI GCGC 1 cut(s) 321
Kzo9I GATC 3 cut(s) 277, 470, 556
LpnPI CCDG 7 cut(s) 52, 105, 249, 340, 408, 561, 633
LweI GCATC 2 cut(s) 598, 613
MaeI CTAG 1 cut(s) 309
MaeII ACGT 1 cut(s) 169
MaeIII GTNAC 1 cut(s) 115
MalI GATC 3 cut(s) 279, 472, 558
MboI GATC 3 cut(s) 277, 470, 556
MboII GAAGA 3 cut(s) 206, 311, 405
MflI RGATCY 1 cut(s) 556
MhlI GDGCHC 1 cut(s) 149
MmeI TCCRAC 1 cut(s) 534
MnlI CCTC 8 cut(s) 24, 27, 30, 33, 36, 74, 228, 426
MroXI GAANNNNTTC 1 cut(s) 207
MseI TTAA 2 cut(s) 294, 336
MslI CAYNNNNRTG 1 cut(s) 87
MwoI GCNNNNNNNGC 4 cut(s) 48, 260, 504, 523
NdeI CATATG 2 cut(s) 182, 645
NdeII GATC 3 cut(s) 277, 470, 556
NlaIII CATG 2 cut(s) 86, 632
NlaIV GGNNCC 1 cut(s) 558
NmeAIII GCCGAG 2 cut(s) 118, 367
NmuCI GTSAC 1 cut(s) 115
PdmI GAANNNNTTC 1 cut(s) 207
PfeI GAWTC 2 cut(s) 208, 267
PflFI GACNNNGTC 1 cut(s) 137
PflMI CCANNNNNTGG 1 cut(s) 204
PsiI TTATAA 1 cut(s) 129
PspN4I GGNNCC 1 cut(s) 558
PsuI RGATCY 1 cut(s) 556
PsyI GACNNNGTC 1 cut(s) 137
RsaI GTAC 1 cut(s) 574
RsaNI GTAC 1 cut(s) 573
RseI CAYNNNNRTG 1 cut(s) 87
SaqAI TTAA 2 cut(s) 294, 336
Sau3AI GATC 3 cut(s) 277, 470, 556
SduI GDGCHC 1 cut(s) 149
SetI ASST 5 cut(s) 111, 172, 336, 353, 519
SfaNI GCATC 2 cut(s) 598, 613
SmiMI CAYNNNNRTG 1 cut(s) 87
SpeI ACTAGT 1 cut(s) 308
SspI AATATT 2 cut(s) 292, 568
SspMI CTAG 1 cut(s) 309
StyI CCWWGG 2 cut(s) 198, 535
TaiI ACGT 1 cut(s) 172
TatI WGTACW 1 cut(s) 572
TfiI GAWTC 2 cut(s) 208, 267
Tru1I TTAA 2 cut(s) 294, 336
Tru9I TTAA 2 cut(s) 294, 336
TseFI GTSAC 1 cut(s) 115
Tsp45I GTSAC 1 cut(s) 115
TspDTI ATGAA 3 cut(s) 99, 259, 592
TspGWI ACGGA 1 cut(s) 549
Tth111I GACNNNGTC 1 cut(s) 137
Van91I CCANNNNNTGG 1 cut(s) 204
XmnI GAANNNNTTC 1 cut(s) 207
XspI CTAG 1 cut(s) 309
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.