Rh3BG022900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000270
Physical Location & Seq
Forward (+)
1498947 .. 1499602
656 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG022900.1

Sequence Viewer

Length: 408 bp
ATGTGCCCGTATTTCTTTTATTGTTCTGCTCGTTATCCTATAACTATTTGGGAGATGAAAGAAAACCAAGTGGATGGCAAACCAGAATGGTGTTTACTTCATCACATATCTTCTCTGTCAGAGATGGTTGCAAAACAACCTTTCATCACTTTAAGATTTGAAATCGTAGGTCTCCACCCTGTTCATGGGGATATAGTGTACTTACAAAATAACGATATATATAGTGAGCCAAGATACATAGTCACGTGCAATGTTCGTGAAAGAACATTAGAGATAGCTACAAAAATTCCATTTGAGAATAGTCCTGGATACGCTTGGGCCCCTGAGCAGATTTGCCACAATGTGATCCCATGGTGGCCAACACCAATTCCAACAAAGACTAAACTATCACGAGGAGTGCCTAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

135

Amino Acids

15.78

Weight (kDa)

6.95

Isoelectric Point (pI)

41.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 340
AcoI YGGCCR 1 cut(s) 356
AcsI RAATTY 1 cut(s) 285
AcvI CACGTG 1 cut(s) 246
AdeI CACNNNGTG 1 cut(s) 343
AfaI GTAC 1 cut(s) 200
AfiI CCNNNNNNNGG 1 cut(s) 185
AgsI TTSAA 1 cut(s) 161
AjnI CCWGG 1 cut(s) 304
AluBI AGCT 1 cut(s) 278
AluI AGCT 1 cut(s) 278
Alw26I GTCTC 1 cut(s) 176
AlwI GGATC 1 cut(s) 340
AoxI GGCC 2 cut(s) 318, 356
ApaI GGGCCC 1 cut(s) 322
ApoI RAATTY 1 cut(s) 285
AspS9I GGNCC 2 cut(s) 318, 319
BaeGI GKGCMC 2 cut(s) 8, 322
BalI TGGCCA 1 cut(s) 358
BanII GRGCYC 1 cut(s) 322
BauI CACGAG 1 cut(s) 390
BbrPI CACGTG 1 cut(s) 246
BccI CCATC 2 cut(s) 68, 118
BciT130I CCWGG 1 cut(s) 306
BciVI GTATCC 1 cut(s) 302
BcoDI GTCTC 1 cut(s) 176
BfuI GTATCC 1 cut(s) 302
Bme1390I CCNGG 1 cut(s) 306
BmgT120I GGNCC 2 cut(s) 318, 319
BmiI GGNNCC 2 cut(s) 320, 321
BmrFI CCNGG 1 cut(s) 306
Bpu10I CCTNAGC 1 cut(s) 324
BsaAI YACGTR 1 cut(s) 246
BsaI GGTCTC 1 cut(s) 176
BsaJI CCNNGG 1 cut(s) 350
Bsc4I CCNNNNNNNGG 1 cut(s) 185
Bse3DI GCAATG 1 cut(s) 256
BseBI CCWGG 1 cut(s) 306
BseDI CCNNGG 1 cut(s) 350
BseGI GGATG 1 cut(s) 79
BseLI CCNNNNNNNGG 1 cut(s) 185
BseMI GCAATG 1 cut(s) 256
BseMII CTCAG 1 cut(s) 315
BseRI GAGGAG 1 cut(s) 408
BseSI GKGCMC 2 cut(s) 8, 322
BshFI GGCC 2 cut(s) 320, 358
BslI CCNNNNNNNGG 1 cut(s) 185
BsmAI GTCTC 1 cut(s) 176
BsnI GGCC 2 cut(s) 320, 358
Bso31I GGTCTC 1 cut(s) 176
Bsp120I GGGCCC 1 cut(s) 318
Bsp1286I GDGCHC 2 cut(s) 8, 322
Bsp143I GATC 1 cut(s) 345
Bsp19I CCATGG 1 cut(s) 350
BspANI GGCC 2 cut(s) 320, 358
BspCNI CTCAG 1 cut(s) 316
BspLI GGNNCC 2 cut(s) 320, 321
BspPI GGATC 1 cut(s) 340
BspTNI GGTCTC 1 cut(s) 176
BsrDI GCAATG 1 cut(s) 256
BssECI CCNNGG 1 cut(s) 350
BssMI GATC 1 cut(s) 345
BssSI CACGAG 1 cut(s) 390
BssT1I CCWWGG 1 cut(s) 350
Bst2BI CACGAG 1 cut(s) 390
Bst2UI CCWGG 1 cut(s) 306
BstBAI YACGTR 1 cut(s) 246
BstDEI CTNAG 1 cut(s) 324
BstDSI CCRYGG 1 cut(s) 350
BstF5I GGATG 1 cut(s) 79
BstKTI GATC 1 cut(s) 348
BstMAI GTCTC 1 cut(s) 176
BstMBI GATC 1 cut(s) 345
BstNI CCWGG 1 cut(s) 306
BstSCI CCNGG 1 cut(s) 304
BstSLI GKGCMC 2 cut(s) 8, 322
BstXI CCANNNNNNTGG 1 cut(s) 74
BsuI GTATCC 1 cut(s) 302
BsuRI GGCC 2 cut(s) 320, 358
BtgI CCRYGG 1 cut(s) 350
BtsCI GGATG 1 cut(s) 79
Cfr13I GGNCC 2 cut(s) 318, 319
Csp6I GTAC 1 cut(s) 199
CviAII CATG 2 cut(s) 185, 351
CviJI RGCY 4 cut(s) 229, 278, 320, 358
CviKI_1 RGCY 4 cut(s) 229, 278, 320, 358
CviQI GTAC 1 cut(s) 199
DdeI CTNAG 1 cut(s) 324
DpnI GATC 1 cut(s) 347
DpnII GATC 1 cut(s) 345
DraIII CACNNNGTG 1 cut(s) 343
EaeI YGGCCR 1 cut(s) 356
Eco130I CCWWGG 1 cut(s) 350
Eco24I GRGCYC 1 cut(s) 322
Eco31I GGTCTC 1 cut(s) 176
Eco72I CACGTG 1 cut(s) 246
EcoO109I RGGNCCY 1 cut(s) 319
EcoRII CCWGG 1 cut(s) 304
EcoT14I CCWWGG 1 cut(s) 350
EcoT38I GRGCYC 1 cut(s) 322
ErhI CCWWGG 1 cut(s) 350
FaeI CATG 2 cut(s) 188, 354
FaiI YATR 9 cut(s) 41, 107, 186, 194, 218, 220, 222, 239, 352
FatI CATG 2 cut(s) 184, 350
FokI GGATG 1 cut(s) 86
FriOI GRGCYC 1 cut(s) 322
HaeIII GGCC 2 cut(s) 320, 358
Hin1II CATG 2 cut(s) 188, 354
Hpy166II GTNNAC 2 cut(s) 95, 199
Hpy188I TCNGA 1 cut(s) 121
Hpy188III TCNNGA 2 cut(s) 257, 390
Hpy8I GTNNAC 2 cut(s) 95, 199
HpyCH4IV ACGT 1 cut(s) 245
HpyCH4V TGCA 2 cut(s) 131, 249
HpyF3I CTNAG 1 cut(s) 324
HpySE526I ACGT 1 cut(s) 245
Hsp92II CATG 2 cut(s) 188, 354
Kzo9I GATC 1 cut(s) 345
LpnPI CCDG 5 cut(s) 96, 192, 291, 318, 336
MaeII ACGT 1 cut(s) 245
MaeIII GTNAC 1 cut(s) 241
MalI GATC 1 cut(s) 347
MboI GATC 1 cut(s) 345
MboII GAAGA 1 cut(s) 102
MhlI GDGCHC 2 cut(s) 8, 322
MlsI TGGCCA 1 cut(s) 358
MluCI AATT 2 cut(s) 285, 366
MluNI TGGCCA 1 cut(s) 358
MmeI TCCRAC 1 cut(s) 395
MnlI CCTC 1 cut(s) 386
Mox20I TGGCCA 1 cut(s) 358
MscI TGGCCA 1 cut(s) 358
MseI TTAA 1 cut(s) 152
Msp20I TGGCCA 1 cut(s) 358
MspR9I CCNGG 1 cut(s) 306
MvaI CCWGG 1 cut(s) 306
NcoI CCATGG 1 cut(s) 350
NdeII GATC 1 cut(s) 345
NlaIII CATG 2 cut(s) 188, 354
NlaIV GGNNCC 2 cut(s) 320, 321
NmuCI GTSAC 1 cut(s) 241
PfoI TCCNGGA 1 cut(s) 304
PmaCI CACGTG 1 cut(s) 246
PmlI CACGTG 1 cut(s) 246
Ppu21I YACGTR 1 cut(s) 246
Psp6I CCWGG 1 cut(s) 304
PspCI CACGTG 1 cut(s) 246
PspGI CCWGG 1 cut(s) 304
PspN4I GGNNCC 2 cut(s) 320, 321
PspOMI GGGCCC 1 cut(s) 318
PspPI GGNCC 2 cut(s) 318, 319
RsaI GTAC 1 cut(s) 200
RsaNI GTAC 1 cut(s) 199
SaqAI TTAA 1 cut(s) 152
Sau3AI GATC 1 cut(s) 345
Sau96I GGNCC 2 cut(s) 318, 319
ScrFI CCNGG 1 cut(s) 306
SduI GDGCHC 2 cut(s) 8, 322
SetI ASST 4 cut(s) 142, 172, 248, 280
Sse9I AATT 2 cut(s) 285, 366
StyD4I CCNGG 1 cut(s) 304
StyI CCWWGG 1 cut(s) 350
TaiI ACGT 1 cut(s) 248
TasI AATT 2 cut(s) 285, 366
TatI WGTACW 1 cut(s) 198
Tru1I TTAA 1 cut(s) 152
Tru9I TTAA 1 cut(s) 152
TseFI GTSAC 1 cut(s) 241
Tsp45I GTSAC 1 cut(s) 241
TspDTI ATGAA 4 cut(s) 71, 89, 133, 173
XapI RAATTY 1 cut(s) 285
XcmI CCANNNNNNNNNTGG 1 cut(s) 182
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.