Rmu_co8268783.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8268783.1
OG0000270
Physical Location & Seq
Reverse (-)
20 .. 823
804 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8268783.1_g000001.1.cds

Sequence Viewer

Length: 804 bp
gtagggttcatttgtgatccctactactactataaggatgatcaagatggcactaatattagtgttaaggttaatgccgactgtaggtggagggttgtgagaatccttccaaatccaatattactacatggttttaacgtggagatcttctcttccgagacgggtcaatggagagtgtacaagtgggctaatgtgttatgcccacaacaagactttagctcattccaaactagaagttcaggtgttgcttacaatggaaagttgtattggtggattcatgacggctttactgttgagttagatccctttagtgttggtactagtagtaccggtgaaggaactatcaataaatgtcgtttcattgattccttcaaagagagatttaatggaccaatgcacataggtttgtgccgagggcgtttgcggatgtgccttggtcatattgctcttggtgttcatgctccattcactatttgggagttgaaagaaaacaaaggaaatggaactttggaatggtgtttggtgtcggaccaaatttttcttcaccagatggttcccaaaagtcgtttaatcagtatacgcagagagcgctatgaagtgtttactgtgataggtttccatccagatgaggaggatatcttgtactttacaatcattgactatgtagtgatgtgcaatgttcgtgagaagaccttagagattgctgcagagattccatctcgagaactaatttggggcatggcaggcgccttcccgctgttccaaccacattggccgacaccagtttccaaactagattactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

267

Amino Acids

30.91

Weight (kDa)

6.26

Isoelectric Point (pI)

38.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 746
AccI GTMKAC 1 cut(s) 577
AciI CCGC 2 cut(s) 424, 755
AclWI GGATC 2 cut(s) 11, 296
AcoI YGGCCR 1 cut(s) 773
AcsI RAATTY 1 cut(s) 534
AcyI GRCGYC 1 cut(s) 747
AfaI GTAC 4 cut(s) 179, 319, 328, 644
AfeI AGCGCT 1 cut(s) 590
AfiI CCNNNNNNNGG 1 cut(s) 84
AgeI ACCGGT 1 cut(s) 329
AgsI TTSAA 2 cut(s) 373, 484
AhlI ACTAGT 1 cut(s) 320
AjuI GAANNNNNNNTTGG 4 cut(s) 250, 282, 525, 557
AluBI AGCT 1 cut(s) 219
AluI AGCT 1 cut(s) 219
Alw26I GTCTC 1 cut(s) 152
AlwI GGATC 2 cut(s) 11, 296
Ama87I CYCGRG 1 cut(s) 720
Aor51HI AGCGCT 1 cut(s) 590
AoxI GGCC 1 cut(s) 773
ApeKI GCWGC 1 cut(s) 704
ApoI RAATTY 1 cut(s) 534
AsiGI ACCGGT 1 cut(s) 329
AspLEI GCGC 2 cut(s) 591, 749
AspS9I GGNCC 2 cut(s) 389, 529
AsuHPI GGTGA 2 cut(s) 344, 536
AvaI CYCGRG 1 cut(s) 720
AvaII GGWCC 2 cut(s) 389, 529
BanI GGYRCC 1 cut(s) 746
BbsI GAAGAC 1 cut(s) 695
BbvI GCAGC 1 cut(s) 691
BccI CCATC 4 cut(s) 41, 544, 627, 724
BceAI ACGGC 1 cut(s) 298
BclI TGATCA 1 cut(s) 40
BcoDI GTCTC 1 cut(s) 152
BcuI ACTAGT 1 cut(s) 320
BfaI CTAG 3 cut(s) 231, 321, 794
BfmI CTRYAG 2 cut(s) 82, 705
BfoI RGCGCY 2 cut(s) 592, 750
BglII AGATCT 1 cut(s) 144
BisI GCNGC 1 cut(s) 705
BlsI GCNGC 1 cut(s) 706
Bme18I GGWCC 2 cut(s) 389, 529
BmeT110I CYCGRG 1 cut(s) 720
BmgT120I GGNCC 2 cut(s) 389, 529
BmiI GGNNCC 2 cut(s) 555, 748
BpiI GAAGAC 1 cut(s) 695
BplI GAGNNNNNCTC 2 cut(s) 134, 166
BsaHI GRCGYC 1 cut(s) 747
BsaJI CCNNGG 2 cut(s) 412, 433
BsaWI WCCGGW 1 cut(s) 329
Bsc4I CCNNNNNNNGG 1 cut(s) 84
Bse118I RCCGGY 1 cut(s) 329
Bse1I ACTGG 1 cut(s) 782
Bse3DI GCAATG 1 cut(s) 682
BseDI CCNNGG 2 cut(s) 412, 433
BseGI GGATG 3 cut(s) 43, 432, 619
BseLI CCNNNNNNNGG 1 cut(s) 84
BseMI GCAATG 1 cut(s) 682
BseNI ACTGG 1 cut(s) 782
BseRI GAGGAG 1 cut(s) 644
BseXI GCAGC 1 cut(s) 691
BshFI GGCC 1 cut(s) 775
BshNI GGYRCC 1 cut(s) 746
BshTI ACCGGT 1 cut(s) 329
BsiHKCI CYCGRG 1 cut(s) 720
BsiSI CCGG 1 cut(s) 330
BslI CCNNNNNNNGG 1 cut(s) 84
BsmAI GTCTC 1 cut(s) 152
BsmBI CGTCTC 1 cut(s) 152
BsnI GGCC 1 cut(s) 775
BsoBI CYCGRG 1 cut(s) 720
Bsp1407I TGTACA 1 cut(s) 177
Bsp143I GATC 4 cut(s) 16, 40, 144, 301
BspACI CCGC 2 cut(s) 424, 755
BspANI GGCC 1 cut(s) 775
BspHI TCATGA 1 cut(s) 277
BspLI GGNNCC 2 cut(s) 555, 748
BspMAI CTGCAG 1 cut(s) 709
BspPI GGATC 2 cut(s) 11, 296
BspT107I GGYRCC 1 cut(s) 746
BsrDI GCAATG 1 cut(s) 682
BsrFI RCCGGY 1 cut(s) 329
BsrGI TGTACA 1 cut(s) 177
BsrI ACTGG 1 cut(s) 782
BssAI RCCGGY 1 cut(s) 329
BssECI CCNNGG 2 cut(s) 412, 433
BssMI GATC 4 cut(s) 16, 40, 144, 301
BssNAI GTATAC 1 cut(s) 578
BssNI GRCGYC 1 cut(s) 747
BssT1I CCWWGG 1 cut(s) 433
Bst1107I GTATAC 1 cut(s) 578
Bst4CI ACNGT 3 cut(s) 83, 292, 607
Bst6I CTCTTC 1 cut(s) 157
BstACI GRCGYC 1 cut(s) 747
BstAUI TGTACA 1 cut(s) 177
BstC8I GCNNGC 1 cut(s) 745
BstDEI CTNAG 1 cut(s) 694
BstF5I GGATG 3 cut(s) 43, 432, 619
BstH2I RGCGCY 2 cut(s) 592, 750
BstHHI GCGC 2 cut(s) 591, 749
BstKTI GATC 4 cut(s) 19, 43, 147, 304
BstMAI GTCTC 1 cut(s) 152
BstMBI GATC 4 cut(s) 16, 40, 144, 301
BstMWI GCNNNNNNNGC 2 cut(s) 588, 744
BstSFI CTRYAG 2 cut(s) 82, 705
BstV1I GCAGC 1 cut(s) 691
BstV2I GAAGAC 1 cut(s) 695
BstX2I RGATCY 2 cut(s) 144, 301
BstYI RGATCY 2 cut(s) 144, 301
BstZ17I GTATAC 1 cut(s) 578
BsuRI GGCC 1 cut(s) 775
BtsCI GGATG 3 cut(s) 43, 432, 619
Cac8I GCNNGC 1 cut(s) 745
CciI TCATGA 1 cut(s) 277
CfoI GCGC 2 cut(s) 591, 749
Cfr10I RCCGGY 1 cut(s) 329
Cfr13I GGNCC 2 cut(s) 389, 529
Csp6I GTAC 4 cut(s) 178, 318, 327, 643
CspAI ACCGGT 1 cut(s) 329
CviAII CATG 4 cut(s) 128, 278, 458, 739
CviJI RGCY 4 cut(s) 188, 219, 285, 775
CviKI_1 RGCY 4 cut(s) 188, 219, 285, 775
CviQI GTAC 4 cut(s) 178, 318, 327, 643
DdeI CTNAG 1 cut(s) 694
DinI GGCGCC 1 cut(s) 748
DpnI GATC 4 cut(s) 18, 42, 146, 303
DpnII GATC 4 cut(s) 16, 40, 144, 301
EaeI YGGCCR 1 cut(s) 773
Eam1104I CTCTTC 1 cut(s) 157
EarI CTCTTC 1 cut(s) 157
Eco130I CCWWGG 1 cut(s) 433
Eco32I GATATC 1 cut(s) 637
Eco47I GGWCC 2 cut(s) 389, 529
Eco47III AGCGCT 1 cut(s) 590
Eco88I CYCGRG 1 cut(s) 720
EcoRV GATATC 1 cut(s) 637
EcoT14I CCWWGG 1 cut(s) 433
EgeI GGCGCC 1 cut(s) 748
EheI GGCGCC 1 cut(s) 748
ErhI CCWWGG 1 cut(s) 433
Esp3I CGTCTC 1 cut(s) 152
FaeI CATG 4 cut(s) 131, 281, 461, 742
FatI CATG 4 cut(s) 127, 277, 457, 738
FauI CCCGC 1 cut(s) 762
FbaI TGATCA 1 cut(s) 40
FblI GTMKAC 1 cut(s) 577
Fnu4HI GCNGC 1 cut(s) 705
FokI GGATG 3 cut(s) 50, 439, 606
Fsp4HI GCNGC 1 cut(s) 705
FspBI CTAG 3 cut(s) 231, 321, 794
GlaI GCGC 2 cut(s) 590, 748
GluI GCNGC 1 cut(s) 705
HaeII RGCGCY 2 cut(s) 592, 750
HaeIII GGCC 1 cut(s) 775
HapII CCGG 1 cut(s) 330
HhaI GCGC 2 cut(s) 591, 749
Hin1I GRCGYC 1 cut(s) 747
Hin1II CATG 4 cut(s) 131, 281, 461, 742
Hin6I GCGC 2 cut(s) 589, 747
HinP1I GCGC 2 cut(s) 589, 747
HinfI GANTC 4 cut(s) 102, 274, 365, 712
HpaII CCGG 1 cut(s) 330
HphI GGTGA 2 cut(s) 344, 536
Hpy166II GTNNAC 3 cut(s) 178, 578, 603
Hpy188I TCNGA 2 cut(s) 157, 529
Hpy188III TCNNGA 6 cut(s) 44, 278, 623, 683, 720, 722
Hpy8I GTNNAC 3 cut(s) 178, 578, 603
HpyAV CCTTC 4 cut(s) 116, 329, 379, 760
HpyCH4III ACNGT 3 cut(s) 83, 292, 607
HpyCH4IV ACGT 1 cut(s) 138
HpyCH4V TGCA 3 cut(s) 397, 675, 707
HpyF10VI GCNNNNNNNGC 2 cut(s) 588, 744
HpyF3I CTNAG 1 cut(s) 694
HpySE526I ACGT 1 cut(s) 138
Hsp92I GRCGYC 1 cut(s) 747
Hsp92II CATG 4 cut(s) 131, 281, 461, 742
HspAI GCGC 2 cut(s) 589, 747
KasI GGCGCC 1 cut(s) 746
Ksp22I TGATCA 1 cut(s) 40
Kzo9I GATC 4 cut(s) 16, 40, 144, 301
LmnI GCTCC 1 cut(s) 466
LpnPI CCDG 6 cut(s) 225, 343, 560, 636, 729, 795
Lsp1109I GCAGC 1 cut(s) 691
MaeI CTAG 3 cut(s) 231, 321, 794
MaeII ACGT 1 cut(s) 138
MalI GATC 4 cut(s) 18, 42, 146, 303
MboI GATC 4 cut(s) 16, 40, 144, 301
MboII GAAGA 4 cut(s) 139, 144, 533, 700
MflI RGATCY 2 cut(s) 144, 301
MluCI AATT 2 cut(s) 534, 729
Mly113I GGCGCC 1 cut(s) 747
MmeI TCCRAC 2 cut(s) 507, 787
MnlI CCTC 4 cut(s) 84, 407, 622, 625
MseI TTAA 5 cut(s) 66, 72, 135, 384, 569
MslI CAYNNNNRTG 1 cut(s) 624
MspA1I CMGCKG 1 cut(s) 757
MspI CCGG 1 cut(s) 330
MwoI GCNNNNNNNGC 2 cut(s) 588, 744
NarI GGCGCC 1 cut(s) 747
NdeII GATC 4 cut(s) 16, 40, 144, 301
NlaIII CATG 4 cut(s) 131, 281, 461, 742
NlaIV GGNNCC 2 cut(s) 555, 748
NmeAIII GCCGAG 1 cut(s) 437
PaeR7I CTCGAG 1 cut(s) 720
PagI TCATGA 1 cut(s) 277
PfeI GAWTC 4 cut(s) 102, 274, 365, 712
PinAI ACCGGT 1 cut(s) 329
PkrI GCNGC 1 cut(s) 706
PluTI GGCGCC 1 cut(s) 750
PspN4I GGNNCC 2 cut(s) 555, 748
PspPI GGNCC 2 cut(s) 389, 529
PstI CTGCAG 1 cut(s) 709
PsuI RGATCY 2 cut(s) 144, 301
RsaI GTAC 4 cut(s) 179, 319, 328, 644
RsaNI GTAC 4 cut(s) 178, 318, 327, 643
RseI CAYNNNNRTG 1 cut(s) 624
SaqAI TTAA 5 cut(s) 66, 72, 135, 384, 569
SatI GCNGC 1 cut(s) 705
Sau3AI GATC 4 cut(s) 16, 40, 144, 301
Sau96I GGNCC 2 cut(s) 389, 529
SetI ASST 8 cut(s) 72, 89, 141, 221, 244, 406, 616, 695
SfcI CTRYAG 2 cut(s) 82, 705
SfoI GGCGCC 1 cut(s) 748
Sfr274I CTCGAG 1 cut(s) 720
SinI GGWCC 2 cut(s) 389, 529
SlaI CTCGAG 1 cut(s) 720
SmiMI CAYNNNNRTG 1 cut(s) 624
SmlI CTYRAG 1 cut(s) 720
SmoI CTYRAG 1 cut(s) 720
SpeI ACTAGT 1 cut(s) 320
Sse9I AATT 2 cut(s) 534, 729
SsiI CCGC 2 cut(s) 424, 755
SspDI GGCGCC 1 cut(s) 746
SspI AATATT 2 cut(s) 58, 120
SspMI CTAG 3 cut(s) 231, 321, 794
StyI CCWWGG 1 cut(s) 433
TaaI ACNGT 3 cut(s) 83, 292, 607
TaiI ACGT 1 cut(s) 141
TaqI TCGA 1 cut(s) 721
TasI AATT 2 cut(s) 534, 729
TatI WGTACW 2 cut(s) 177, 642
TfiI GAWTC 4 cut(s) 102, 274, 365, 712
Tru1I TTAA 5 cut(s) 66, 72, 135, 384, 569
Tru9I TTAA 5 cut(s) 66, 72, 135, 384, 569
TseI GCWGC 1 cut(s) 704
TspDTI ATGAA 4 cut(s) 266, 349, 446, 609
VpaK11BI GGWCC 2 cut(s) 389, 529
XapI RAATTY 1 cut(s) 534
XcmI CCANNNNNNNNNTGG 1 cut(s) 471
XhoI CTCGAG 1 cut(s) 720
XmiI GTMKAC 1 cut(s) 577
XspI CTAG 3 cut(s) 231, 321, 794
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.