Rh3BG022700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000270
Physical Location & Seq
Forward (+)
1473061 .. 1473729
669 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG022700.1

Sequence Viewer

Length: 669 bp
ATGGGTCTTTGTCAAGGGCGTTTGCGGATGTGCCCGTTTTTCTTTTATTGTTCTGCTAGTTATCCTATAACTATTTGGGAGTTGAAAGAAAACCAAGTGGATGGGAAACCAGAATGGTGTTTACTTCATCAAATATCTTCCCTGTCAGAGATGGTTGCAAAACAACCTTTCATCACTTTACATTTTGCAATCGTAGATTTCCACCCAGTTCATGGGGATATAGTGTACTTACAAAATAACGATATATATAGTGAGCCAAGATACATAGTCACGTGCAATGTTCGCGAAAGAACATTAGAGATAGCTACAAAAATTCCATTTGAGAATAGTCCTGGATACGCTTGGGCCCCTGAGCAGATTTGCCACAATGTGATCCCATGGTGGCCAACACCAATTCCAAAAAGACTAAACTACCACGAGGAGTACCTAAATATCACTGTGATTAGTGTAGACATCTTTACTATTAAGGTAGGTTGCTTAAGTAATGTTAAGCAATTGAAACAAAAAATTGAAGAGAAGAAAGGGCCTGGGCAGCATGAACTACATTTTGATGGGCGAGTTTTAGAAGATGATGACAAGTGGCTTGCAGATTATGGAATCAAGGACAAATCTAAGATTTACATTGGCGAACATTGTTCAAAAGAGTGGCTTGTGTCAGAGCCTCACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

222

Amino Acids

25.91

Weight (kDa)

5.92

Isoelectric Point (pI)

33.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ubiquitin PF00240 144 - 206 1.8e-09 Ubiquitin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 212
AccI GTMKAC 1 cut(s) 450
AccII CGCG 1 cut(s) 285
AciI CCGC 1 cut(s) 25
AclWI GGATC 1 cut(s) 367
AcoI YGGCCR 1 cut(s) 383
AcsI RAATTY 1 cut(s) 312
AcvI CACGTG 1 cut(s) 273
AdeI CACNNNGTG 1 cut(s) 370
AfaI GTAC 2 cut(s) 227, 425
AfiI CCNNNNNNNGG 1 cut(s) 212
AflII CTTAAG 1 cut(s) 478
AgsI TTSAA 4 cut(s) 85, 499, 512, 639
AjnI CCWGG 2 cut(s) 331, 526
AluBI AGCT 1 cut(s) 305
AluI AGCT 1 cut(s) 305
AlwI GGATC 1 cut(s) 367
AoxI GGCC 3 cut(s) 345, 383, 524
ApaI GGGCCC 1 cut(s) 349
ApeKI GCWGC 1 cut(s) 532
ApoI RAATTY 1 cut(s) 312
AspS9I GGNCC 3 cut(s) 345, 346, 524
BaeGI GKGCMC 2 cut(s) 35, 349
BalI TGGCCA 1 cut(s) 385
BanII GRGCYC 1 cut(s) 349
BauI CACGAG 1 cut(s) 416
BbrPI CACGTG 1 cut(s) 273
BbvI GCAGC 1 cut(s) 544
BccI CCATC 3 cut(s) 95, 145, 545
BciT130I CCWGG 2 cut(s) 333, 528
BciVI GTATCC 1 cut(s) 329
BfaI CTAG 2 cut(s) 57, 667
BfrI CTTAAG 1 cut(s) 478
BfuI GTATCC 1 cut(s) 329
BisI GCNGC 1 cut(s) 533
BlsI GCNGC 1 cut(s) 534
Bme1390I CCNGG 2 cut(s) 333, 528
BmgT120I GGNCC 3 cut(s) 345, 346, 524
BmiI GGNNCC 2 cut(s) 347, 348
BmrFI CCNGG 2 cut(s) 333, 528
BmrI ACTGGG 1 cut(s) 200
BmuI ACTGGG 1 cut(s) 200
Bpu10I CCTNAGC 1 cut(s) 351
BsaAI YACGTR 1 cut(s) 273
BsaJI CCNNGG 2 cut(s) 377, 527
Bsc4I CCNNNNNNNGG 1 cut(s) 212
Bse1I ACTGG 1 cut(s) 206
Bse3DI GCAATG 1 cut(s) 283
BseBI CCWGG 2 cut(s) 333, 528
BseDI CCNNGG 2 cut(s) 377, 527
BseGI GGATG 2 cut(s) 33, 106
BseLI CCNNNNNNNGG 1 cut(s) 212
BseMI GCAATG 1 cut(s) 283
BseMII CTCAG 1 cut(s) 342
BseNI ACTGG 1 cut(s) 206
BseRI GAGGAG 1 cut(s) 434
BseSI GKGCMC 2 cut(s) 35, 349
BseXI GCAGC 1 cut(s) 544
Bsh1236I CGCG 1 cut(s) 285
BshFI GGCC 3 cut(s) 347, 385, 526
BslI CCNNNNNNNGG 1 cut(s) 212
BsnI GGCC 3 cut(s) 347, 385, 526
Bsp120I GGGCCC 1 cut(s) 345
Bsp1286I GDGCHC 2 cut(s) 35, 349
Bsp143I GATC 1 cut(s) 372
Bsp19I CCATGG 1 cut(s) 377
Bsp68I TCGCGA 1 cut(s) 285
BspACI CCGC 1 cut(s) 25
BspANI GGCC 3 cut(s) 347, 385, 526
BspCNI CTCAG 1 cut(s) 343
BspFNI CGCG 1 cut(s) 285
BspLI GGNNCC 2 cut(s) 347, 348
BspPI GGATC 1 cut(s) 367
BspTI CTTAAG 1 cut(s) 478
BsrDI GCAATG 1 cut(s) 283
BsrI ACTGG 1 cut(s) 206
BssECI CCNNGG 2 cut(s) 377, 527
BssMI GATC 1 cut(s) 372
BssSI CACGAG 1 cut(s) 416
BssT1I CCWWGG 1 cut(s) 377
Bst2BI CACGAG 1 cut(s) 416
Bst2UI CCWGG 2 cut(s) 333, 528
Bst4CI ACNGT 1 cut(s) 439
Bst6I CTCTTC 1 cut(s) 507
BstAFI CTTAAG 1 cut(s) 478
BstBAI YACGTR 1 cut(s) 273
BstC8I GCNNGC 1 cut(s) 585
BstDEI CTNAG 2 cut(s) 351, 612
BstDSI CCRYGG 1 cut(s) 377
BstF5I GGATG 2 cut(s) 33, 106
BstFNI CGCG 1 cut(s) 285
BstKTI GATC 1 cut(s) 375
BstMBI GATC 1 cut(s) 372
BstMWI GCNNNNNNNGC 2 cut(s) 282, 532
BstNI CCWGG 2 cut(s) 333, 528
BstSCI CCNGG 2 cut(s) 331, 526
BstSLI GKGCMC 2 cut(s) 35, 349
BstUI CGCG 1 cut(s) 285
BstV1I GCAGC 1 cut(s) 544
BstXI CCANNNNNNTGG 1 cut(s) 101
BsuI GTATCC 1 cut(s) 329
BsuRI GGCC 3 cut(s) 347, 385, 526
BtgI CCRYGG 1 cut(s) 377
BtsCI GGATG 2 cut(s) 33, 106
BtsIMutI CAGTG 1 cut(s) 435
BtuMI TCGCGA 1 cut(s) 285
Cac8I GCNNGC 1 cut(s) 585
Cfr13I GGNCC 3 cut(s) 345, 346, 524
Csp6I GTAC 2 cut(s) 226, 424
CviAII CATG 3 cut(s) 212, 378, 536
CviJI RGCY 8 cut(s) 256, 305, 347, 385, 526, 583, 649, 661
CviKI_1 RGCY 8 cut(s) 256, 305, 347, 385, 526, 583, 649, 661
CviQI GTAC 2 cut(s) 226, 424
DdeI CTNAG 2 cut(s) 351, 612
DpnI GATC 1 cut(s) 374
DpnII GATC 1 cut(s) 372
DraIII CACNNNGTG 1 cut(s) 370
EaeI YGGCCR 1 cut(s) 383
Eam1104I CTCTTC 1 cut(s) 507
EarI CTCTTC 1 cut(s) 507
Eco130I CCWWGG 1 cut(s) 377
Eco24I GRGCYC 1 cut(s) 349
Eco72I CACGTG 1 cut(s) 273
EcoO109I RGGNCCY 2 cut(s) 346, 524
EcoRII CCWGG 2 cut(s) 331, 526
EcoT14I CCWWGG 1 cut(s) 377
EcoT38I GRGCYC 1 cut(s) 349
ErhI CCWWGG 1 cut(s) 377
FaeI CATG 3 cut(s) 215, 381, 539
FalI AAGNNNNNCTT 2 cut(s) 633, 665
FatI CATG 3 cut(s) 211, 377, 535
FblI GTMKAC 1 cut(s) 450
Fnu4HI GCNGC 1 cut(s) 533
FokI GGATG 2 cut(s) 40, 113
FriOI GRGCYC 1 cut(s) 349
Fsp4HI GCNGC 1 cut(s) 533
FspBI CTAG 2 cut(s) 57, 667
GluI GCNGC 1 cut(s) 533
HaeIII GGCC 3 cut(s) 347, 385, 526
Hin1II CATG 3 cut(s) 215, 381, 539
HinfI GANTC 1 cut(s) 597
Hpy166II GTNNAC 3 cut(s) 122, 226, 451
Hpy188I TCNGA 2 cut(s) 148, 658
Hpy188III TCNNGA 1 cut(s) 284
Hpy8I GTNNAC 3 cut(s) 122, 226, 451
HpyCH4III ACNGT 1 cut(s) 439
HpyCH4IV ACGT 1 cut(s) 272
HpyCH4V TGCA 4 cut(s) 158, 188, 276, 587
HpyF10VI GCNNNNNNNGC 2 cut(s) 282, 532
HpyF3I CTNAG 2 cut(s) 351, 612
HpySE526I ACGT 1 cut(s) 272
Hsp92II CATG 3 cut(s) 215, 381, 539
Kzo9I GATC 1 cut(s) 372
LpnPI CCDG 8 cut(s) 123, 155, 219, 318, 345, 363, 513, 540
Lsp1109I GCAGC 1 cut(s) 544
MaeI CTAG 2 cut(s) 57, 667
MaeII ACGT 1 cut(s) 272
MaeIII GTNAC 1 cut(s) 268
MalI GATC 1 cut(s) 374
MboI GATC 1 cut(s) 372
MboII GAAGA 4 cut(s) 129, 524, 529, 578
MfeI CAATTG 1 cut(s) 494
MhlI GDGCHC 2 cut(s) 35, 349
MlsI TGGCCA 1 cut(s) 385
MluCI AATT 4 cut(s) 312, 393, 494, 507
MluNI TGGCCA 1 cut(s) 385
MnlI CCTC 1 cut(s) 412
Mox20I TGGCCA 1 cut(s) 385
MscI TGGCCA 1 cut(s) 385
MseI TTAA 3 cut(s) 465, 479, 489
MslI CAYNNNNRTG 1 cut(s) 549
Msp20I TGGCCA 1 cut(s) 385
MspCI CTTAAG 1 cut(s) 478
MspR9I CCNGG 2 cut(s) 333, 528
MunI CAATTG 1 cut(s) 494
MvaI CCWGG 2 cut(s) 333, 528
MvnI CGCG 1 cut(s) 285
MwoI GCNNNNNNNGC 2 cut(s) 282, 532
NcoI CCATGG 1 cut(s) 377
NdeII GATC 1 cut(s) 372
NlaIII CATG 3 cut(s) 215, 381, 539
NlaIV GGNNCC 2 cut(s) 347, 348
NmuCI GTSAC 1 cut(s) 268
NruI TCGCGA 1 cut(s) 285
PfeI GAWTC 1 cut(s) 597
PflMI CCANNNNNTGG 1 cut(s) 212
PfoI TCCNGGA 1 cut(s) 331
PkrI GCNGC 1 cut(s) 534
PmaCI CACGTG 1 cut(s) 273
PmlI CACGTG 1 cut(s) 273
Ppu21I YACGTR 1 cut(s) 273
Psp6I CCWGG 2 cut(s) 331, 526
PspCI CACGTG 1 cut(s) 273
PspGI CCWGG 2 cut(s) 331, 526
PspN4I GGNNCC 2 cut(s) 347, 348
PspOMI GGGCCC 1 cut(s) 345
PspPI GGNCC 3 cut(s) 345, 346, 524
RruI TCGCGA 1 cut(s) 285
RsaI GTAC 2 cut(s) 227, 425
RsaNI GTAC 2 cut(s) 226, 424
RseI CAYNNNNRTG 1 cut(s) 549
SaqAI TTAA 3 cut(s) 465, 479, 489
SatI GCNGC 1 cut(s) 533
Sau3AI GATC 1 cut(s) 372
Sau96I GGNCC 3 cut(s) 345, 346, 524
ScrFI CCNGG 2 cut(s) 333, 528
SduI GDGCHC 2 cut(s) 35, 349
SetI ASST 6 cut(s) 169, 275, 307, 429, 471, 475
SmiMI CAYNNNNRTG 1 cut(s) 549
SmlI CTYRAG 1 cut(s) 478
SmoI CTYRAG 1 cut(s) 478
Sse9I AATT 4 cut(s) 312, 393, 494, 507
SsiI CCGC 1 cut(s) 25
SspMI CTAG 2 cut(s) 57, 667
StyD4I CCNGG 2 cut(s) 331, 526
StyI CCWWGG 1 cut(s) 377
TaaI ACNGT 1 cut(s) 439
TaiI ACGT 1 cut(s) 275
TasI AATT 4 cut(s) 312, 393, 494, 507
TatI WGTACW 1 cut(s) 225
TfiI GAWTC 1 cut(s) 597
Tru1I TTAA 3 cut(s) 465, 479, 489
Tru9I TTAA 3 cut(s) 465, 479, 489
TscAI CASTG 1 cut(s) 442
TseFI GTSAC 1 cut(s) 268
TseI GCWGC 1 cut(s) 532
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 4 cut(s) 116, 160, 200, 552
TspRI CASTG 1 cut(s) 442
Van91I CCANNNNNTGG 1 cut(s) 212
Vha464I CTTAAG 1 cut(s) 478
XapI RAATTY 1 cut(s) 312
XcmI CCANNNNNNNNNTGG 1 cut(s) 209
XmiI GTMKAC 1 cut(s) 450
XspI CTAG 2 cut(s) 57, 667
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.