Rh3AG022500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000270
Physical Location & Seq
Forward (+)
1514587 .. 1516346
1760 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG022500.1

Sequence Viewer

Length: 1635 bp
ATGACCCGTGCTGCCAAAAGAAGCCGCACTGCCCGCCAGCCACTACCATCAAAATCCCCGATCGATAATCTATCAGACCTTTTATTGGTTGAAGTTCTCTGCCGACTTCCTGACAACAAAGTAGTTTCTCAATGCAAGCGCGTCTCCAAACGTTGGTGCACTCTCCTCTCTGATCCTTATTTTGTTGGACGCTTTTTTTGCCTCCAACTTGATCAGCAAAAGCCCCATCTGAATGCTTATGCTATGATTCCCGATAGCGACCGTGCTAGGAGGCACATGACTTCAGTCCTCACTATGTCGTCCCAGCCTCCTTATTCGGTGGTCGACAAAAAAAGAAGCATCTTCTCTTTCCTCCCTTGTTTTCAAGGTCAGTCTTATGCCAACAGAGAAGATGAACTAGAAGTGGCAGGAACATATAATGACTTGGTCTTGTGCTCCCCAACTGAAGTCGCTCAACGGGATTACTACATATGCAATTTCTTCACCAATGAATGGATTCGTCTTCCTCCCACCCCTAGAGTCATCAAGTCCGGTTTAGTACCGGTAGGATTCATTTGTGATCCCTACTACAGTATTAAGGAAGACGGTAGCAACCGCTCTACCATAAAGCTTAATGCCGAGTATAGATCCAAGGTTGTGCGATTACTTCCCAAATATCTTCCCAATAGCCGAGATAAAAGGGGCTTTTCTGTGGAGATCTATTCTTCTGAGACAGGTGAATGGAGAGAGTATCAACTGTCGAAGGTACTAAACTCACAACAAAACAATATTTCTTTTACTGATTGGCGACGTAGGTGTACAGGCGTTGCTTGCAATGGGAAGTTGTACTGGTGGAATCATCATGGCTTTATTTTTGAGTTGGATCCGTTCAACATTAGAAGTACCGGCAACATTATTGATACATGTCGTTTCATTGGTGCTCCCGCCCTAAGCAGATTCAAGGCAGAGTATAGACATATAGGTGTGTGTCAAGGGCGTTTGCGGATGTGCCCGTCTTGGTTTAATGTTACTGATAAAGTCATAATTTGGGAGTTGAGAGAAAATCAAGTGGATAGCAAACAAGAATGGTGTGTGATATGCGACGGAGCTTCTCTGTCCCAGATGGTTCATAAACAACCTTTAGTCCTTGATCGAAAGAAACTTTGCATATCGCAAGTGGTAGGTTTCCACCCTAGTGATGGAGATATCCTGTATTTACAACTCCCTGGATATACAGTCATGTGCAATGTTCTTGAAAAGACGTTAGAGATGGCAACAAAAAATCCATTTCATGACAATGAATGGTCTTACAAGTCTTATAAGTCTCACCGGGAAAGTTATCCACTTGTGTTCCCATGGTGGCCGACGCCAGTTCAAAGAAGACTAGACTATCGTGAGGAGTACTTCAACATAAGAGTGACTGGGAAATACAACATTACTGTTGGGGTAGGTTGCTTGACTACTCTTAAACAATTGAAAAAAATGCTGGGAGAGGATGAATTATACTTTAATGAGCTACTTTTAGAGAAAGATGGTGATGATATGCAGCTTACGCTCCTCGGAATTGGAGAGGATTCTGAGATTCACATTGTTGAAGATTGTTGGAGAAAGCCTGCTCGGAGGAAGAGGAAGAGAAAGAGGATAGCTCAACGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

544

Amino Acids

63.49

Weight (kDa)

9.13

Isoelectric Point (pI)

52.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 109 - 422 3.2e-13 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1299
AccB7I CCANNNNNTGG 2 cut(s) 153, 492
AccBSI CCGCTC 1 cut(s) 597
AccI GTMKAC 1 cut(s) 324
AccII CGCG 1 cut(s) 141
AciI CCGC 5 cut(s) 25, 34, 595, 924, 982
AclI AACGTT 1 cut(s) 151
AclWI GGATC 5 cut(s) 167, 554, 621, 857, 870
AcoI YGGCCR 1 cut(s) 1340
AcuI CTGAAG 2 cut(s) 267, 465
AcyI GRCGYC 1 cut(s) 1346
AfaI GTAC 6 cut(s) 540, 747, 799, 827, 883, 1382
AfiI CCNNNNNNNGG 4 cut(s) 85, 153, 492, 1178
AflIII ACRYGT 1 cut(s) 902
AgeI ACCGGT 1 cut(s) 541
AgsI TTSAA 9 cut(s) 92, 365, 871, 940, 1235, 1355, 1387, 1456, 1574
AjnI CCWGG 1 cut(s) 1204
AleI CACNNNNGTG 1 cut(s) 1173
AluBI AGCT 5 cut(s) 610, 1088, 1495, 1528, 1625
AluI AGCT 5 cut(s) 610, 1088, 1495, 1528, 1625
Alw21I GWGCWC 3 cut(s) 161, 437, 922
Alw26I GTCTC 3 cut(s) 148, 704, 1308
Alw44I GTGCAC 1 cut(s) 157
AlwI GGATC 5 cut(s) 167, 554, 621, 857, 870
AoxI GGCC 1 cut(s) 1340
ApaLI GTGCAC 1 cut(s) 157
ApeKI GCWGC 2 cut(s) 11, 1525
ArsI GACNNNNNNTTYG 2 cut(s) 180, 212
AsiGI ACCGGT 1 cut(s) 541
Asp700I GAANNNNTTC 1 cut(s) 495
AspLEI GCGC 1 cut(s) 141
AsuC2I CCSGG 1 cut(s) 1310
AsuHPI GGTGA 4 cut(s) 475, 728, 1298, 1526
BaeGI GKGCMC 2 cut(s) 161, 992
BamHI GGATCC 1 cut(s) 862
BbsI GAAGAC 3 cut(s) 494, 588, 1366
Bbv12I GWGCWC 3 cut(s) 161, 437, 922
BbvI GCAGC 1 cut(s) 1537
BccI CCATC 6 cut(s) 55, 234, 1096, 1172, 1243, 1505
BciT130I CCWGG 1 cut(s) 1206
BclI TGATCA 1 cut(s) 211
BcnI CCSGG 1 cut(s) 1310
BcoDI GTCTC 3 cut(s) 148, 704, 1308
BfaI CTAG 5 cut(s) 267, 398, 516, 1173, 1364
BfmI CTRYAG 1 cut(s) 568
BglII AGATCT 1 cut(s) 696
BisI GCNGC 3 cut(s) 12, 25, 1526
BlsI GCNGC 3 cut(s) 13, 26, 1527
BmcAI AGTACT 1 cut(s) 1382
Bme1390I CCNGG 2 cut(s) 1206, 1310
BmiI GGNNCC 1 cut(s) 864
BmrFI CCNGG 2 cut(s) 1206, 1310
BmrI ACTGGG 1 cut(s) 1410
BmsI GCATC 1 cut(s) 348
BmuI ACTGGG 1 cut(s) 1410
BoxI GACNNNNGTC 1 cut(s) 284
BpiI GAAGAC 3 cut(s) 494, 588, 1366
BplI GAGNNNNNCTC 1 cut(s) 1609
Bpu10I CCTNAGC 1 cut(s) 929
BpuMI CCSGG 1 cut(s) 1310
Bsa29I ATCGAT 1 cut(s) 63
BsaHI GRCGYC 1 cut(s) 1346
BsaJI CCNNGG 4 cut(s) 630, 1204, 1334, 1537
BsaWI WCCGGW 2 cut(s) 530, 541
Bsc4I CCNNNNNNNGG 4 cut(s) 85, 153, 492, 1178
Bse118I RCCGGY 2 cut(s) 541, 884
Bse1I ACTGG 3 cut(s) 833, 1349, 1405
Bse3DI GCAATG 2 cut(s) 820, 1231
BseBI CCWGG 1 cut(s) 1206
BseCI ATCGAT 1 cut(s) 63
BseDI CCNNGG 4 cut(s) 630, 1204, 1334, 1537
BseGI GGATG 2 cut(s) 990, 1480
BseLI CCNNNNNNNGG 4 cut(s) 85, 153, 492, 1178
BseMI GCAATG 2 cut(s) 820, 1231
BseMII CTCAG 2 cut(s) 699, 1548
BseNI ACTGG 3 cut(s) 833, 1349, 1405
BseRI GAGGAG 3 cut(s) 155, 1391, 1526
BseSI GKGCMC 2 cut(s) 161, 992
BseXI GCAGC 1 cut(s) 1537
BseYI CCCAGC 2 cut(s) 303, 1465
Bsh1236I CGCG 1 cut(s) 141
Bsh1285I CGRYCG 2 cut(s) 63, 262
BshFI GGCC 1 cut(s) 1342
BshTI ACCGGT 1 cut(s) 541
BshVI ATCGAT 1 cut(s) 63
BsiEI CGRYCG 2 cut(s) 63, 262
BsiHKAI GWGCWC 3 cut(s) 161, 437, 922
BsiSI CCGG 4 cut(s) 531, 542, 885, 1309
BslFI GGGAC 2 cut(s) 286, 1081
BslI CCNNNNNNNGG 4 cut(s) 85, 153, 492, 1178
BsmAI GTCTC 3 cut(s) 148, 704, 1308
BsmBI CGTCTC 1 cut(s) 148
BsmFI GGGAC 2 cut(s) 286, 1081
BsmI GAATGC 1 cut(s) 238
BsnI GGCC 1 cut(s) 1342
Bsp1286I GDGCHC 4 cut(s) 161, 437, 922, 992
Bsp1407I TGTACA 1 cut(s) 797
Bsp143I GATC 8 cut(s) 60, 172, 211, 559, 626, 696, 862, 1129
Bsp19I CCATGG 1 cut(s) 1334
BspACI CCGC 5 cut(s) 25, 34, 595, 924, 982
BspANI GGCC 1 cut(s) 1342
BspCNI CTCAG 2 cut(s) 700, 1549
BspDI ATCGAT 1 cut(s) 63
BspFNI CGCG 1 cut(s) 141
BspHI TCATGA 1 cut(s) 1270
BspLI GGNNCC 1 cut(s) 864
BspPI GGATC 5 cut(s) 167, 554, 621, 857, 870
BsrBI CCGCTC 1 cut(s) 597
BsrDI GCAATG 2 cut(s) 820, 1231
BsrFI RCCGGY 2 cut(s) 541, 884
BsrGI TGTACA 1 cut(s) 797
BsrI ACTGG 3 cut(s) 833, 1349, 1405
BssAI RCCGGY 2 cut(s) 541, 884
BssECI CCNNGG 4 cut(s) 630, 1204, 1334, 1537
BssMI GATC 8 cut(s) 60, 172, 211, 559, 626, 696, 862, 1129
BssNI GRCGYC 1 cut(s) 1346
BssT1I CCWWGG 2 cut(s) 630, 1334
Bst2UI CCWGG 1 cut(s) 1206
Bst4CI ACNGT 6 cut(s) 263, 572, 587, 738, 1216, 1420
Bst6I CTCTTC 2 cut(s) 1598, 1604
BstACI GRCGYC 1 cut(s) 1346
BstAUI TGTACA 1 cut(s) 797
BstC8I GCNNGC 5 cut(s) 34, 38, 137, 811, 1593
BstDEI CTNAG 3 cut(s) 708, 929, 1557
BstDSI CCRYGG 1 cut(s) 1334
BstF5I GGATG 2 cut(s) 990, 1480
BstFNI CGCG 1 cut(s) 141
BstHHI GCGC 1 cut(s) 141
BstKTI GATC 8 cut(s) 63, 175, 214, 562, 629, 699, 865, 1132
BstMAI GTCTC 3 cut(s) 148, 704, 1308
BstMBI GATC 8 cut(s) 60, 172, 211, 559, 626, 696, 862, 1129
BstMCI CGRYCG 2 cut(s) 63, 262
BstMWI GCNNNNNNNGC 4 cut(s) 33, 198, 810, 1531
BstNI CCWGG 1 cut(s) 1206
BstNSI RCATGY 1 cut(s) 906
BstPAI GACNNNNGTC 1 cut(s) 284
BstSCI CCNGG 2 cut(s) 1204, 1308
BstSFI CTRYAG 1 cut(s) 568
BstSLI GKGCMC 2 cut(s) 161, 992
BstUI CGCG 1 cut(s) 141
BstV1I GCAGC 1 cut(s) 1537
BstV2I GAAGAC 3 cut(s) 494, 588, 1366
BstX2I RGATCY 3 cut(s) 626, 696, 862
BstYI RGATCY 3 cut(s) 626, 696, 862
Bsu15I ATCGAT 1 cut(s) 63
BsuRI GGCC 1 cut(s) 1342
BsuTUI ATCGAT 1 cut(s) 63
BtgI CCRYGG 1 cut(s) 1334
BtsCI GGATG 2 cut(s) 990, 1480
BtsI GCAGTG 1 cut(s) 27
BtsIMutI CAGTG 1 cut(s) 27
Cac8I GCNNGC 5 cut(s) 34, 38, 137, 811, 1593
CciI TCATGA 1 cut(s) 1270
CfoI GCGC 1 cut(s) 141
Cfr10I RCCGGY 2 cut(s) 541, 884
ClaI ATCGAT 1 cut(s) 63
CseI GACGC 3 cut(s) 130, 198, 1354
Csp6I GTAC 6 cut(s) 539, 746, 798, 826, 882, 1381
CspAI ACCGGT 1 cut(s) 541
CviAII CATG 6 cut(s) 277, 842, 903, 1219, 1271, 1335
CviQI GTAC 6 cut(s) 539, 746, 798, 826, 882, 1381
DdeI CTNAG 3 cut(s) 708, 929, 1557
DpnI GATC 8 cut(s) 62, 174, 213, 561, 628, 698, 864, 1131
DpnII GATC 8 cut(s) 60, 172, 211, 559, 626, 696, 862, 1129
EaeI YGGCCR 1 cut(s) 1340
Eam1104I CTCTTC 2 cut(s) 1598, 1604
EarI CTCTTC 2 cut(s) 1598, 1604
Eco130I CCWWGG 2 cut(s) 630, 1334
Eco32I GATATC 1 cut(s) 1186
Eco57I CTGAAG 2 cut(s) 267, 465
EcoRII CCWGG 1 cut(s) 1204
EcoRV GATATC 1 cut(s) 1186
EcoT14I CCWWGG 2 cut(s) 630, 1334
ErhI CCWWGG 2 cut(s) 630, 1334
Esp3I CGTCTC 1 cut(s) 148
FaeI CATG 6 cut(s) 280, 845, 906, 1222, 1274, 1338
FaqI GGGAC 2 cut(s) 286, 1081
FatI CATG 6 cut(s) 276, 841, 902, 1218, 1270, 1334
FauI CCCGC 2 cut(s) 41, 931
FauNDI CATATG 1 cut(s) 470
FbaI TGATCA 1 cut(s) 211
FblI GTMKAC 1 cut(s) 324
Fnu4HI GCNGC 3 cut(s) 12, 25, 1526
FokI GGATG 2 cut(s) 997, 1487
Fsp4HI GCNGC 3 cut(s) 12, 25, 1526
FspBI CTAG 5 cut(s) 267, 398, 516, 1173, 1364
GlaI GCGC 1 cut(s) 140
GluI GCNGC 3 cut(s) 12, 25, 1526
GsaI CCCAGC 2 cut(s) 307, 1469
HaeIII GGCC 1 cut(s) 1342
HapII CCGG 4 cut(s) 531, 542, 885, 1309
HgaI GACGC 3 cut(s) 130, 198, 1354
HhaI GCGC 1 cut(s) 141
Hin1I GRCGYC 1 cut(s) 1346
Hin1II CATG 6 cut(s) 280, 845, 906, 1222, 1274, 1338
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HincII GTYRAC 1 cut(s) 325
HindII GTYRAC 1 cut(s) 325
HindIII AAGCTT 1 cut(s) 608
HinfI GANTC 8 cut(s) 247, 496, 519, 549, 835, 936, 1553, 1561
HpaII CCGG 4 cut(s) 531, 542, 885, 1309
HphI GGTGA 4 cut(s) 475, 728, 1298, 1526
Hpy166II GTNNAC 3 cut(s) 159, 325, 798
Hpy188I TCNGA 7 cut(s) 76, 172, 231, 709, 1541, 1558, 1599
Hpy188III TCNNGA 5 cut(s) 110, 251, 1232, 1271, 1373
Hpy8I GTNNAC 3 cut(s) 159, 325, 798
Hpy99I CGWCG 3 cut(s) 792, 1085, 1348
HpyAV CCTTC 1 cut(s) 736
HpyCH4III ACNGT 6 cut(s) 263, 572, 587, 738, 1216, 1420
HpyCH4IV ACGT 3 cut(s) 151, 790, 1241
HpyCH4V TGCA 7 cut(s) 135, 159, 474, 813, 1146, 1224, 1525
HpyF10VI GCNNNNNNNGC 4 cut(s) 33, 198, 810, 1531
HpyF3I CTNAG 3 cut(s) 708, 929, 1557
HpySE526I ACGT 3 cut(s) 151, 790, 1241
Hsp92I GRCGYC 1 cut(s) 1346
Hsp92II CATG 6 cut(s) 280, 845, 906, 1222, 1274, 1338
HspAI GCGC 1 cut(s) 139
Ksp22I TGATCA 1 cut(s) 211
Kzo9I GATC 8 cut(s) 60, 172, 211, 559, 626, 696, 862, 1129
LmnI GCTCC 4 cut(s) 440, 925, 1085, 1539
Lsp1109I GCAGC 1 cut(s) 1537
LweI GCATC 1 cut(s) 348
MaeI CTAG 5 cut(s) 267, 398, 516, 1173, 1364
MaeII ACGT 3 cut(s) 151, 790, 1241
MaeIII GTNAC 2 cut(s) 1006, 1396
MalI GATC 8 cut(s) 62, 174, 213, 561, 628, 698, 864, 1131
MbiI CCGCTC 1 cut(s) 597
MboI GATC 8 cut(s) 60, 172, 211, 559, 626, 696, 862, 1129
MfeI CAATTG 1 cut(s) 1451
MflI RGATCY 3 cut(s) 626, 696, 862
MhlI GDGCHC 4 cut(s) 161, 437, 922, 992
MluCI AATT 5 cut(s) 475, 1023, 1451, 1478, 1542
MlyI GAGTC 1 cut(s) 528
MmeI TCCRAC 4 cut(s) 166, 229, 840, 1562
MroXI GAANNNNTTC 1 cut(s) 495
MseI TTAA 5 cut(s) 576, 612, 1002, 1446, 1488
MslI CAYNNNNRTG 5 cut(s) 231, 960, 1173, 1275, 1394
MspI CCGG 4 cut(s) 531, 542, 885, 1309
MspR9I CCNGG 2 cut(s) 1206, 1310
MunI CAATTG 1 cut(s) 1451
Mva1269I GAATGC 1 cut(s) 238
MvaI CCWGG 1 cut(s) 1206
MvnI CGCG 1 cut(s) 141
MwoI GCNNNNNNNGC 4 cut(s) 33, 198, 810, 1531
NciI CCSGG 1 cut(s) 1310
NcoI CCATGG 1 cut(s) 1334
NdeI CATATG 1 cut(s) 470
NdeII GATC 8 cut(s) 60, 172, 211, 559, 626, 696, 862, 1129
NlaIII CATG 6 cut(s) 280, 845, 906, 1222, 1274, 1338
NlaIV GGNNCC 1 cut(s) 864
NmeAIII GCCGAG 2 cut(s) 643, 695
NmuCI GTSAC 1 cut(s) 1396
NspI RCATGY 1 cut(s) 906
OliI CACNNNNGTG 1 cut(s) 1173
PagI TCATGA 1 cut(s) 1270
PciI ACATGT 1 cut(s) 902
PctI GAATGC 1 cut(s) 238
PdmI GAANNNNTTC 1 cut(s) 495
PfeI GAWTC 7 cut(s) 247, 496, 549, 835, 936, 1553, 1561
PflFI GACNNNGTC 1 cut(s) 425
PflMI CCANNNNNTGG 2 cut(s) 153, 492
PinAI ACCGGT 1 cut(s) 541
PkrI GCNGC 3 cut(s) 13, 26, 1527
Ple19I CGATCG 1 cut(s) 63
PleI GAGTC 1 cut(s) 527
PpsI GAGTC 1 cut(s) 527
PscI ACATGT 1 cut(s) 902
PshAI GACNNNNGTC 1 cut(s) 284
PsiI TTATAA 1 cut(s) 1299
Psp1406I AACGTT 1 cut(s) 151
Psp6I CCWGG 1 cut(s) 1204
PspFI CCCAGC 2 cut(s) 303, 1465
PspGI CCWGG 1 cut(s) 1204
PspN4I GGNNCC 1 cut(s) 864
PsuI RGATCY 3 cut(s) 626, 696, 862
PsyI GACNNNGTC 1 cut(s) 425
PvuI CGATCG 1 cut(s) 63
RsaI GTAC 6 cut(s) 540, 747, 799, 827, 883, 1382
RsaNI GTAC 6 cut(s) 539, 746, 798, 826, 882, 1381
RseI CAYNNNNRTG 5 cut(s) 231, 960, 1173, 1275, 1394
SalI GTCGAC 1 cut(s) 323
SaqAI TTAA 5 cut(s) 576, 612, 1002, 1446, 1488
SatI GCNGC 3 cut(s) 12, 25, 1526
Sau3AI GATC 8 cut(s) 60, 172, 211, 559, 626, 696, 862, 1129
ScaI AGTACT 1 cut(s) 1382
SchI GAGTC 1 cut(s) 528
ScrFI CCNGG 2 cut(s) 1206, 1310
SduI GDGCHC 4 cut(s) 161, 437, 922, 992
SfaNI GCATC 1 cut(s) 348
SfcI CTRYAG 1 cut(s) 568
SmiMI CAYNNNNRTG 5 cut(s) 231, 960, 1173, 1275, 1394
Sse9I AATT 5 cut(s) 475, 1023, 1451, 1478, 1542
SsiI CCGC 5 cut(s) 25, 34, 595, 924, 982
SspI AATATT 1 cut(s) 769
SspMI CTAG 5 cut(s) 267, 398, 516, 1173, 1364
StyD4I CCNGG 2 cut(s) 1204, 1308
StyI CCWWGG 2 cut(s) 630, 1334
TaaI ACNGT 6 cut(s) 263, 572, 587, 738, 1216, 1420
TaiI ACGT 3 cut(s) 154, 793, 1244
TaqI TCGA 4 cut(s) 63, 324, 740, 1132
TasI AATT 5 cut(s) 475, 1023, 1451, 1478, 1542
TatI WGTACW 3 cut(s) 797, 825, 1380
TauI GCSGC 1 cut(s) 27
TfiI GAWTC 7 cut(s) 247, 496, 549, 835, 936, 1553, 1561
Tru1I TTAA 5 cut(s) 576, 612, 1002, 1446, 1488
Tru9I TTAA 5 cut(s) 576, 612, 1002, 1446, 1488
TscAI CASTG 1 cut(s) 34
TseFI GTSAC 1 cut(s) 1396
TseI GCWGC 2 cut(s) 11, 1525
Tsp45I GTSAC 1 cut(s) 1396
TspDTI ATGAA 8 cut(s) 408, 504, 541, 901, 1097, 1259, 1293, 1491
TspGWI ACGGA 2 cut(s) 855, 1098
TspRI CASTG 1 cut(s) 34
Tth111I GACNNNGTC 1 cut(s) 425
Van91I CCANNNNNTGG 2 cut(s) 153, 492
VneI GTGCAC 1 cut(s) 157
XceI RCATGY 1 cut(s) 906
XcmI CCANNNNNNNNNTGG 1 cut(s) 1175
XmiI GTMKAC 1 cut(s) 324
XmnI GAANNNNTTC 1 cut(s) 495
XspI CTAG 5 cut(s) 267, 398, 516, 1173, 1364
ZrmI AGTACT 1 cut(s) 1382
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.