Prupe.6G075500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0000270
Physical Location & Seq
Reverse (-)
5182935 .. 5184083
1149 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G075500.1

Sequence Viewer

Length: 1149 bp
ATGAATATTGATGATCTTCCTCAACATCTGTTGGTTGAAATCCTTTGTCGACTTCCTCGCAATAAAATCGTTTTTCAATGTAAGTGTGTGTCTAAACGTTGGTCTGCTCTAATCTCGAATTCTTATTTTGTCCTCCGCTTTCTCTCTGTGCGAAAAGGTACAACTGAGGACACATTATTTTTTGAGGCAACCAAACGAAATAAACGAGATAAGGAATTTGTTACCATGTCCGCACTTTCGTCTGGGTTCAGGACCCGCAAGTTCTTTCTTAGTTTCGTCCCTGGCTTTGGTCGGCTAGCTGTGGTCGCGACGTATAATGATTTAATCTTGTGCTGCCCAGAGGATGGTCTTTCACGTGATTACTACATCTGTAATCCATACACCAAGCAATGGGTTGCTCTTCCTCCAGCACCAAGAGTTCATCGAGCAGTAGCAAAAACGGGATTCATATGCGACGGTGCCTACTATAACTGCAAGGAGCTCGACGGTGATCGTATAACTAGTAAAAATGCTGGCATCGAGCTTAATTCTGAGTATAGGTACAGAGTTGTGAACCGAATTCGTCAGCGTGGACCGAATCCCTCGCACTTCAGGGTGGAGATCTTCTCATCGGAGACTGGTGAATGGACACAGTCAGTTATACAATGCCCCCAAGACTTCCTTAACTTTGATGACATCAATCCGGTAATGCTTGCCTACAAAGGAATGTTGTATTGGTCTGCTAATGGTGGAATTCTTATGGCTTTGGATCCCTTCAACAACAACCCTAAGACCACTAGTGGTAGTGGTAGTACTAGTGCTTATATTTTTGAGAATCAATTCTGTCGTTTCACTGCATTTGATAAGCCTGCTTTTGCACCCGAAGACACTGATATATGTCTTCAGTGTCTAAGCGTGTGCCAAGGGCGTTTACGGATGTGCTACTCAGGGACCGGCAAGACTCGGAGTGTTTGGGAGTGGAAAGAAGTACAAGAGCAGTCGCATGGGGGCAAATTAATGAAATGGTTTTTGATAAAAAAGTTTTCGTGGCATCAACTGGTTACGGAGAATAATCCAGTAATTAGTATATACGCATTGTGGCGGACTAGGGTGTTAGCTTTAGACCCAAAAGATGAGGATATCTTATATGTAGCTCTGGATGGAGATATT
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

383

Amino Acids

43.98

Weight (kDa)

8.75

Isoelectric Point (pI)

37.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 458
AccB7I CCANNNNNTGG 2 cut(s) 344, 390
AccI GTMKAC 1 cut(s) 49
AccII CGCG 1 cut(s) 308
AciI CCGC 4 cut(s) 136, 231, 256, 1081
AclI AACGTT 1 cut(s) 97
AclWI GGATC 2 cut(s) 743, 756
AcsI RAATTY 4 cut(s) 118, 215, 558, 732
AcuI CTGAAG 2 cut(s) 574, 866
AcvI CACGTG 1 cut(s) 356
AfaI GTAC 4 cut(s) 160, 542, 793, 969
AfiI CCNNNNNNNGG 3 cut(s) 287, 344, 390
AgsI TTSAA 3 cut(s) 38, 77, 757
AhlI ACTAGT 3 cut(s) 500, 776, 794
AjnI CCWGG 1 cut(s) 280
AjuI GAANNNNNNNTTGG 2 cut(s) 697, 729
AluBI AGCT 5 cut(s) 299, 481, 523, 1097, 1133
AluI AGCT 5 cut(s) 299, 481, 523, 1097, 1133
Alw21I GWGCWC 1 cut(s) 483
Alw26I GTCTC 1 cut(s) 608
AlwI GGATC 2 cut(s) 743, 756
ApeKI GCWGC 1 cut(s) 333
ApoI RAATTY 4 cut(s) 118, 215, 558, 732
AseI ATTAAT 1 cut(s) 995
Asp700I GAANNNNTTC 1 cut(s) 818
AspS9I GGNCC 3 cut(s) 252, 572, 930
AsuHPI GGTGA 2 cut(s) 500, 632
AsuNHI GCTAGC 1 cut(s) 295
AvaII GGWCC 3 cut(s) 252, 572, 930
BamHI GGATCC 1 cut(s) 748
BanI GGYRCC 1 cut(s) 458
BanII GRGCYC 1 cut(s) 483
BbrPI CACGTG 1 cut(s) 356
BbsI GAAGAC 2 cut(s) 870, 872
Bbv12I GWGCWC 1 cut(s) 483
BbvI GCAGC 1 cut(s) 320
BccI CCATC 2 cut(s) 338, 1133
BcgI CGANNNNNNTGC 4 cut(s) 49, 83, 463, 497
BciT130I CCWGG 1 cut(s) 282
BcoDI GTCTC 1 cut(s) 608
BcuI ACTAGT 3 cut(s) 500, 776, 794
BfaI CTAG 5 cut(s) 296, 501, 777, 795, 1086
BglII AGATCT 1 cut(s) 600
BisI GCNGC 1 cut(s) 334
BlsI GCNGC 1 cut(s) 335
BmcAI AGTACT 1 cut(s) 793
Bme1390I CCNGG 1 cut(s) 282
Bme18I GGWCC 3 cut(s) 252, 572, 930
BmgT120I GGNCC 3 cut(s) 252, 572, 930
BmiI GGNNCC 4 cut(s) 254, 460, 750, 931
BmrFI CCNGG 1 cut(s) 282
BmsI GCATC 2 cut(s) 525, 1039
BmtI GCTAGC 1 cut(s) 299
BpiI GAAGAC 2 cut(s) 870, 872
BplI GAGNNNNNCTC 2 cut(s) 590, 622
BpmI CTGGAG 1 cut(s) 390
BsaAI YACGTR 1 cut(s) 356
BsaJI CCNNGG 2 cut(s) 280, 901
BsaWI WCCGGW 1 cut(s) 682
Bsc4I CCNNNNNNNGG 3 cut(s) 287, 344, 390
Bse118I RCCGGY 1 cut(s) 932
Bse1I ACTGG 3 cut(s) 622, 1041, 1055
Bse3DI GCAATG 1 cut(s) 395
BseBI CCWGG 1 cut(s) 282
BseDI CCNNGG 2 cut(s) 280, 901
BseGI GGATG 3 cut(s) 349, 921, 1144
BseLI CCNNNNNNNGG 3 cut(s) 287, 344, 390
BseMI GCAATG 1 cut(s) 395
BseMII CTCAG 3 cut(s) 156, 522, 939
BseNI ACTGG 3 cut(s) 622, 1041, 1055
BseXI GCAGC 1 cut(s) 320
Bsh1236I CGCG 1 cut(s) 308
BshNI GGYRCC 1 cut(s) 458
BsiHKAI GWGCWC 1 cut(s) 483
BsiSI CCGG 2 cut(s) 683, 933
BslFI GGGAC 2 cut(s) 263, 943
BslI CCNNNNNNNGG 3 cut(s) 287, 344, 390
BsmAI GTCTC 1 cut(s) 608
BsmFI GGGAC 2 cut(s) 263, 943
Bsp1286I GDGCHC 1 cut(s) 483
Bsp143I GATC 4 cut(s) 13, 490, 600, 748
Bsp68I TCGCGA 1 cut(s) 308
BspACI CCGC 4 cut(s) 136, 231, 256, 1081
BspCNI CTCAG 3 cut(s) 157, 523, 938
BspFNI CGCG 1 cut(s) 308
BspLI GGNNCC 4 cut(s) 254, 460, 750, 931
BspOI GCTAGC 1 cut(s) 299
BspPI GGATC 2 cut(s) 743, 756
BspQI GCTCTTC 1 cut(s) 405
BspT107I GGYRCC 1 cut(s) 458
BsrDI GCAATG 1 cut(s) 395
BsrFI RCCGGY 1 cut(s) 932
BsrI ACTGG 3 cut(s) 622, 1041, 1055
BssAI RCCGGY 1 cut(s) 932
BssECI CCNNGG 2 cut(s) 280, 901
BssMI GATC 4 cut(s) 13, 490, 600, 748
BssT1I CCWWGG 1 cut(s) 901
Bst2UI CCWGG 1 cut(s) 282
Bst4CI ACNGT 3 cut(s) 458, 488, 633
Bst6I CTCTTC 1 cut(s) 405
BstBAI YACGTR 1 cut(s) 356
BstC8I GCNNGC 4 cut(s) 297, 514, 693, 849
BstDEI CTNAG 6 cut(s) 165, 269, 531, 768, 890, 925
BstF5I GGATG 3 cut(s) 349, 921, 1144
BstFNI CGCG 1 cut(s) 308
BstKTI GATC 4 cut(s) 16, 493, 603, 751
BstMAI GTCTC 1 cut(s) 608
BstMBI GATC 4 cut(s) 13, 490, 600, 748
BstMWI GCNNNNNNNGC 1 cut(s) 305
BstNI CCWGG 1 cut(s) 282
BstSCI CCNGG 1 cut(s) 280
BstUI CGCG 1 cut(s) 308
BstV1I GCAGC 1 cut(s) 320
BstV2I GAAGAC 2 cut(s) 870, 872
BstX2I RGATCY 2 cut(s) 600, 748
BstYI RGATCY 2 cut(s) 600, 748
BtsCI GGATG 3 cut(s) 349, 921, 1144
BtsI GCAGTG 1 cut(s) 831
BtsIMutI CAGTG 3 cut(s) 831, 867, 890
BtuMI TCGCGA 1 cut(s) 308
Cac8I GCNNGC 4 cut(s) 297, 514, 693, 849
Cfr10I RCCGGY 1 cut(s) 932
Cfr13I GGNCC 3 cut(s) 252, 572, 930
Csp6I GTAC 4 cut(s) 159, 541, 792, 968
CviAII CATG 2 cut(s) 226, 983
CviJI RGCY 9 cut(s) 285, 295, 299, 481, 523, 743, 847, 1097, 1133
CviKI_1 RGCY 9 cut(s) 285, 295, 299, 481, 523, 743, 847, 1097, 1133
CviQI GTAC 4 cut(s) 159, 541, 792, 968
DdeI CTNAG 6 cut(s) 165, 269, 531, 768, 890, 925
DpnI GATC 4 cut(s) 15, 492, 602, 750
DpnII GATC 4 cut(s) 13, 490, 600, 748
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
EciI GGCGGA 1 cut(s) 1096
Ecl136II GAGCTC 1 cut(s) 481
Eco130I CCWWGG 1 cut(s) 901
Eco24I GRGCYC 1 cut(s) 483
Eco32I GATATC 1 cut(s) 1120
Eco47I GGWCC 3 cut(s) 252, 572, 930
Eco53kI GAGCTC 1 cut(s) 481
Eco57I CTGAAG 2 cut(s) 574, 866
Eco72I CACGTG 1 cut(s) 356
EcoICRI GAGCTC 1 cut(s) 481
EcoO109I RGGNCCY 1 cut(s) 252
EcoRI GAATTC 3 cut(s) 118, 558, 732
EcoRII CCWGG 1 cut(s) 280
EcoRV GATATC 1 cut(s) 1120
EcoT14I CCWWGG 1 cut(s) 901
EcoT38I GRGCYC 1 cut(s) 483
ErhI CCWWGG 1 cut(s) 901
FaeI CATG 2 cut(s) 229, 986
FalI AAGNNNNNCTT 2 cut(s) 645, 677
FaqI GGGAC 2 cut(s) 263, 943
FatI CATG 2 cut(s) 225, 982
FauI CCCGC 1 cut(s) 263
FauNDI CATATG 1 cut(s) 449
FblI GTMKAC 1 cut(s) 49
Fnu4HI GCNGC 1 cut(s) 334
FokI GGATG 2 cut(s) 356, 928
FriOI GRGCYC 1 cut(s) 483
Fsp4HI GCNGC 1 cut(s) 334
FspBI CTAG 5 cut(s) 296, 501, 777, 795, 1086
GluI GCNGC 1 cut(s) 334
GsuI CTGGAG 1 cut(s) 390
HapII CCGG 2 cut(s) 683, 933
Hin1II CATG 2 cut(s) 229, 986
HincII GTYRAC 1 cut(s) 50
HindII GTYRAC 1 cut(s) 50
HinfI GANTC 4 cut(s) 444, 577, 814, 940
HpaII CCGG 2 cut(s) 683, 933
HphI GGTGA 2 cut(s) 500, 632
Hpy166II GTNNAC 4 cut(s) 50, 553, 572, 911
Hpy188I TCNGA 3 cut(s) 532, 613, 945
Hpy188III TCNNGA 4 cut(s) 115, 250, 307, 1136
Hpy8I GTNNAC 4 cut(s) 50, 553, 572, 911
Hpy99I CGWCG 3 cut(s) 313, 458, 488
HpyAV CCTTC 1 cut(s) 763
HpyCH4III ACNGT 3 cut(s) 458, 488, 633
HpyCH4IV ACGT 3 cut(s) 97, 311, 355
HpyCH4V TGCA 3 cut(s) 474, 836, 857
HpyF10VI GCNNNNNNNGC 1 cut(s) 305
HpyF3I CTNAG 6 cut(s) 165, 269, 531, 768, 890, 925
HpySE526I ACGT 3 cut(s) 97, 311, 355
Hsp92II CATG 2 cut(s) 229, 986
Kzo9I GATC 4 cut(s) 13, 490, 600, 748
LguI GCTCTTC 1 cut(s) 405
LmnI GCTCC 1 cut(s) 478
Lsp1109I GCAGC 1 cut(s) 320
LweI GCATC 2 cut(s) 525, 1039
MaeI CTAG 5 cut(s) 296, 501, 777, 795, 1086
MaeII ACGT 3 cut(s) 97, 311, 355
MaeIII GTNAC 2 cut(s) 220, 1039
MalI GATC 4 cut(s) 15, 492, 602, 750
MboI GATC 4 cut(s) 13, 490, 600, 748
MboII GAAGA 5 cut(s) 8, 392, 595, 872, 875
MflI RGATCY 2 cut(s) 600, 748
MhlI GDGCHC 1 cut(s) 483
MluCI AATT 8 cut(s) 118, 215, 526, 558, 732, 818, 992, 1059
MlyI GAGTC 1 cut(s) 934
MnlI CCTC 9 cut(s) 30, 66, 143, 160, 178, 334, 414, 592, 1108
MroXI GAANNNNTTC 1 cut(s) 818
MseI TTAA 4 cut(s) 323, 525, 663, 995
MspI CCGG 2 cut(s) 683, 933
MspR9I CCNGG 1 cut(s) 282
MvaI CCWGG 1 cut(s) 282
MvnI CGCG 1 cut(s) 308
MwoI GCNNNNNNNGC 1 cut(s) 305
NdeI CATATG 1 cut(s) 449
NdeII GATC 4 cut(s) 13, 490, 600, 748
NheI GCTAGC 1 cut(s) 295
NlaIII CATG 2 cut(s) 229, 986
NlaIV GGNNCC 4 cut(s) 254, 460, 750, 931
NruI TCGCGA 1 cut(s) 308
PciSI GCTCTTC 1 cut(s) 405
PcsI WCGNNNNNNNCGW 1 cut(s) 202
PdmI GAANNNNTTC 1 cut(s) 818
PfeI GAWTC 3 cut(s) 444, 577, 814
PflFI GACNNNGTC 1 cut(s) 631
PflMI CCANNNNNTGG 2 cut(s) 344, 390
PkrI GCNGC 1 cut(s) 335
PleI GAGTC 1 cut(s) 934
PmaCI CACGTG 1 cut(s) 356
PmlI CACGTG 1 cut(s) 356
PpsI GAGTC 1 cut(s) 934
Ppu21I YACGTR 1 cut(s) 356
PpuMI RGGWCCY 1 cut(s) 252
PshBI ATTAAT 1 cut(s) 995
Psp124BI GAGCTC 1 cut(s) 483
Psp1406I AACGTT 1 cut(s) 97
Psp5II RGGWCCY 1 cut(s) 252
Psp6I CCWGG 1 cut(s) 280
PspCI CACGTG 1 cut(s) 356
PspGI CCWGG 1 cut(s) 280
PspN4I GGNNCC 4 cut(s) 254, 460, 750, 931
PspPI GGNCC 3 cut(s) 252, 572, 930
PspPPI RGGWCCY 1 cut(s) 252
PsuI RGATCY 2 cut(s) 600, 748
PsyI GACNNNGTC 1 cut(s) 631
RruI TCGCGA 1 cut(s) 308
RsaI GTAC 4 cut(s) 160, 542, 793, 969
RsaNI GTAC 4 cut(s) 159, 541, 792, 968
SacI GAGCTC 1 cut(s) 483
SalI GTCGAC 1 cut(s) 48
SapI GCTCTTC 1 cut(s) 405
SaqAI TTAA 4 cut(s) 323, 525, 663, 995
SatI GCNGC 1 cut(s) 334
Sau3AI GATC 4 cut(s) 13, 490, 600, 748
Sau96I GGNCC 3 cut(s) 252, 572, 930
ScaI AGTACT 1 cut(s) 793
SchI GAGTC 1 cut(s) 934
ScrFI CCNGG 1 cut(s) 282
SduI GDGCHC 1 cut(s) 483
SfaNI GCATC 2 cut(s) 525, 1039
SinI GGWCC 3 cut(s) 252, 572, 930
SpeI ACTAGT 3 cut(s) 500, 776, 794
Sse9I AATT 8 cut(s) 118, 215, 526, 558, 732, 818, 992, 1059
SsiI CCGC 4 cut(s) 136, 231, 256, 1081
SspI AATATT 1 cut(s) 7
SspMI CTAG 5 cut(s) 296, 501, 777, 795, 1086
SstI GAGCTC 1 cut(s) 483
StyD4I CCNGG 1 cut(s) 280
StyI CCWWGG 1 cut(s) 901
TaaI ACNGT 3 cut(s) 458, 488, 633
TaiI ACGT 3 cut(s) 100, 314, 358
TaqI TCGA 5 cut(s) 49, 116, 424, 483, 519
TaqII GACCGA 1 cut(s) 589
TasI AATT 8 cut(s) 118, 215, 526, 558, 732, 818, 992, 1059
TatI WGTACW 2 cut(s) 791, 967
TfiI GAWTC 3 cut(s) 444, 577, 814
Tru1I TTAA 4 cut(s) 323, 525, 663, 995
Tru9I TTAA 4 cut(s) 323, 525, 663, 995
TscAI CASTG 3 cut(s) 838, 874, 890
TseI GCWGC 1 cut(s) 333
TspDTI ATGAA 4 cut(s) 17, 410, 436, 1013
TspGWI ACGGA 2 cut(s) 928, 1058
TspRI CASTG 3 cut(s) 838, 874, 890
Tth111I GACNNNGTC 1 cut(s) 631
Van91I CCANNNNNTGG 2 cut(s) 344, 390
VpaK11BI GGWCC 3 cut(s) 252, 572, 930
VspI ATTAAT 1 cut(s) 995
XapI RAATTY 4 cut(s) 118, 215, 558, 732
XmiI GTMKAC 1 cut(s) 49
XmnI GAANNNNTTC 1 cut(s) 818
XspI CTAG 5 cut(s) 296, 501, 777, 795, 1086
ZrmI AGTACT 1 cut(s) 793
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.