Rh1CG104900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0000270
Physical Location & Seq
Reverse (-)
21544049 .. 21556664
12616 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG104900.1

Sequence Viewer

Length: 813 bp
ATGGGAAAAAAGGTGGCGTCCAATGATGATCATAATGGAGATGAAGAACAAGGAACTAGTACTACTAGAACGAATTCTTTCATCTTTAATGCTGAGTATAAGTGGAAGGTTGTGCGACTAGTTCCGAATTCATCAGATCCAAACTTTCATTTCGAGATCTTCTTTTCTGAGACCCGTCAATGGAGAGAGATAGATGTAGTATGCCCTCGGCCATTTTATTCATTTGCGATTTTTGATGATTCCAATCAGATTACTGCAACAGATTACGTAGCTTACAATGAAATGTTGTACTGGCGGAGCAGAAATGGCCTTATACTTGAGTTGGATACGCCCAAATTCAATACTAGTATTGCTAAGTACCGTTTCATTGAACCGCCTGAGGGTTTTAATAGTCCACCAGCAAGAGGCTCGCTAGGAGTAAGCGGAGGGCGTCTGCAGTTGAACAGGGAAGGAGAAGACTTTCTCCCTCAAGATCACGACGAGTTTCTGCAGCCATTTAGAGTTAGGGAGTTGAGACAAGTTGTGAAGGGCAGCGAAGGCAAACTCAAATGGTTAGCCGACAGTGTTCCTCTAGCTTGTAAAAATATTGCTGTCAGCCAACCGTACACTTTTAGGATGCTAGCTTTCCACCCAAACAATGAGGATGTCGTGTATTTGGCTCATTACCATAAAATTATCACATGCAACCTTCGTGGAGGAACGTTAGAGAAAACTTCAGAGTGTCCAGTAAAGGGAAGGACGAGGGTACACTGCTACCCGTTTTCTCTCCCATGGTGGCCTACCCCGGTTCCTAGGACTCTTAGTGTAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

270

Amino Acids

31.15

Weight (kDa)

6.67

Isoelectric Point (pI)

48.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 295, 374, 423
AclI AACGTT 1 cut(s) 701
AclWI GGATC 1 cut(s) 131
AcoI YGGCCR 1 cut(s) 209
AcsI RAATTY 3 cut(s) 73, 127, 335
AcuI CTGAAG 1 cut(s) 699
AcyI GRCGYC 2 cut(s) 17, 430
AfaI GTAC 5 cut(s) 61, 290, 359, 605, 747
AfiI CCNNNNNNNGG 4 cut(s) 180, 380, 404, 731
AgsI TTSAA 3 cut(s) 340, 371, 442
AhlI ACTAGT 3 cut(s) 56, 118, 344
AluBI AGCT 3 cut(s) 272, 575, 623
AluI AGCT 3 cut(s) 272, 575, 623
Alw26I GTCTC 2 cut(s) 164, 508
AlwI GGATC 1 cut(s) 131
AoxI GGCC 3 cut(s) 209, 307, 776
ApeKI GCWGC 2 cut(s) 490, 531
ApoI RAATTY 3 cut(s) 73, 127, 335
Asp700I GAANNNNTTC 3 cut(s) 73, 77, 459
AspA2I CCTAGG 1 cut(s) 791
AsuC2I CCSGG 1 cut(s) 785
AsuNHI GCTAGC 1 cut(s) 619
AvrII CCTAGG 1 cut(s) 791
AxyI CCTNAGG 1 cut(s) 378
BbsI GAAGAC 1 cut(s) 462
BbvI GCAGC 2 cut(s) 502, 543
BcgI CGANNNNNNTGC 2 cut(s) 390, 424
BciVI GTATCC 1 cut(s) 319
BclI TGATCA 1 cut(s) 28
BcnI CCSGG 1 cut(s) 785
BcoDI GTCTC 2 cut(s) 164, 508
BcuI ACTAGT 3 cut(s) 56, 118, 344
BfaI CTAG 8 cut(s) 57, 66, 119, 345, 413, 572, 620, 792
BfmI CTRYAG 2 cut(s) 434, 488
BfuI GTATCC 1 cut(s) 319
BglII AGATCT 1 cut(s) 156
BisI GCNGC 2 cut(s) 491, 532
BlnI CCTAGG 1 cut(s) 791
BlsI GCNGC 2 cut(s) 492, 533
BmcAI AGTACT 1 cut(s) 61
Bme1390I CCNGG 1 cut(s) 785
BmiI GGNNCC 1 cut(s) 789
BmrFI CCNGG 1 cut(s) 785
BmsI GCATC 1 cut(s) 606
BmtI GCTAGC 1 cut(s) 623
BpiI GAAGAC 1 cut(s) 462
BpuEI CTTGAG 2 cut(s) 338, 453
BpuMI CCSGG 1 cut(s) 785
BsaAI YACGTR 1 cut(s) 268
BsaBI GATNNNNATC 1 cut(s) 243
BsaHI GRCGYC 2 cut(s) 17, 430
BsaI GGTCTC 1 cut(s) 164
BsaJI CCNNGG 4 cut(s) 206, 770, 783, 791
Bsc4I CCNNNNNNNGG 4 cut(s) 180, 380, 404, 731
Bse1I ACTGG 2 cut(s) 296, 725
Bse21I CCTNAGG 1 cut(s) 378
Bse8I GATNNNNATC 1 cut(s) 243
BseDI CCNNGG 4 cut(s) 206, 770, 783, 791
BseGI GGATG 2 cut(s) 621, 649
BseJI GATNNNNATC 1 cut(s) 243
BseLI CCNNNNNNNGG 4 cut(s) 180, 380, 404, 731
BseMII CTCAG 3 cut(s) 84, 159, 369
BseNI ACTGG 2 cut(s) 296, 725
BseXI GCAGC 2 cut(s) 502, 543
BshFI GGCC 3 cut(s) 211, 309, 778
BsiSI CCGG 1 cut(s) 785
BslI CCNNNNNNNGG 4 cut(s) 180, 380, 404, 731
BsmAI GTCTC 2 cut(s) 164, 508
BsnI GGCC 3 cut(s) 211, 309, 778
Bso31I GGTCTC 1 cut(s) 164
Bsp143I GATC 4 cut(s) 28, 136, 156, 472
Bsp19I CCATGG 1 cut(s) 770
BspACI CCGC 3 cut(s) 295, 374, 423
BspANI GGCC 3 cut(s) 211, 309, 778
BspCNI CTCAG 3 cut(s) 85, 160, 370
BspLI GGNNCC 1 cut(s) 789
BspMAI CTGCAG 2 cut(s) 438, 492
BspOI GCTAGC 1 cut(s) 623
BspPI GGATC 1 cut(s) 131
BspTNI GGTCTC 1 cut(s) 164
BsrI ACTGG 2 cut(s) 296, 725
BssECI CCNNGG 4 cut(s) 206, 770, 783, 791
BssMI GATC 4 cut(s) 28, 136, 156, 472
BssNI GRCGYC 2 cut(s) 17, 430
BssT1I CCWWGG 2 cut(s) 770, 791
Bst4CI ACNGT 3 cut(s) 362, 563, 603
BstACI GRCGYC 2 cut(s) 17, 430
BstBAI YACGTR 1 cut(s) 268
BstC8I GCNNGC 2 cut(s) 410, 621
BstDEI CTNAG 5 cut(s) 93, 168, 354, 378, 800
BstDSI CCRYGG 1 cut(s) 770
BstF5I GGATG 2 cut(s) 621, 649
BstKTI GATC 4 cut(s) 31, 139, 159, 475
BstMAI GTCTC 2 cut(s) 164, 508
BstMBI GATC 4 cut(s) 28, 136, 156, 472
BstMWI GCNNNNNNNGC 2 cut(s) 306, 537
BstNSI RCATGY 1 cut(s) 684
BstSCI CCNGG 1 cut(s) 783
BstSFI CTRYAG 2 cut(s) 434, 488
BstSNI TACGTA 1 cut(s) 268
BstV1I GCAGC 2 cut(s) 502, 543
BstV2I GAAGAC 1 cut(s) 462
BstX2I RGATCY 2 cut(s) 136, 156
BstYI RGATCY 2 cut(s) 136, 156
Bsu36I CCTNAGG 1 cut(s) 378
BsuI GTATCC 1 cut(s) 319
BsuRI GGCC 3 cut(s) 211, 309, 778
BtgI CCRYGG 1 cut(s) 770
BtsCI GGATG 2 cut(s) 621, 649
BtsI GCAGTG 1 cut(s) 748
BtsIMutI CAGTG 2 cut(s) 568, 748
Cac8I GCNNGC 2 cut(s) 410, 621
CseI GACGC 2 cut(s) 6, 419
Csp6I GTAC 5 cut(s) 60, 289, 358, 604, 746
CspCI CAANNNNNGTGG 2 cut(s) 673, 708
CviAII CATG 2 cut(s) 681, 771
CviQI GTAC 5 cut(s) 60, 289, 358, 604, 746
DdeI CTNAG 5 cut(s) 93, 168, 354, 378, 800
DpnI GATC 4 cut(s) 30, 138, 158, 474
DpnII GATC 4 cut(s) 28, 136, 156, 472
EaeI YGGCCR 1 cut(s) 209
EciI GGCGGA 1 cut(s) 310
Eco105I TACGTA 1 cut(s) 268
Eco130I CCWWGG 2 cut(s) 770, 791
Eco31I GGTCTC 1 cut(s) 164
Eco57I CTGAAG 1 cut(s) 699
Eco81I CCTNAGG 1 cut(s) 378
EcoRI GAATTC 2 cut(s) 73, 127
EcoT14I CCWWGG 2 cut(s) 770, 791
ErhI CCWWGG 2 cut(s) 770, 791
FaeI CATG 2 cut(s) 684, 774
FaiI YATR 7 cut(s) 33, 99, 202, 314, 669, 682, 772
FatI CATG 2 cut(s) 680, 770
FbaI TGATCA 1 cut(s) 28
Fnu4HI GCNGC 2 cut(s) 491, 532
FokI GGATG 2 cut(s) 628, 656
Fsp4HI GCNGC 2 cut(s) 491, 532
FspBI CTAG 8 cut(s) 57, 66, 119, 345, 413, 572, 620, 792
GluI GCNGC 2 cut(s) 491, 532
HaeIII GGCC 3 cut(s) 211, 309, 778
HapII CCGG 1 cut(s) 785
HgaI GACGC 2 cut(s) 6, 419
Hin1I GRCGYC 2 cut(s) 17, 430
Hin1II CATG 2 cut(s) 684, 774
HinfI GANTC 2 cut(s) 239, 796
HpaII CCGG 1 cut(s) 785
Hpy166II GTNNAC 3 cut(s) 395, 606, 748
Hpy188I TCNGA 5 cut(s) 126, 136, 169, 249, 718
Hpy188III TCNNGA 3 cut(s) 154, 470, 476
Hpy8I GTNNAC 3 cut(s) 395, 606, 748
Hpy99I CGWCG 1 cut(s) 482
HpyAV CCTTC 6 cut(s) 100, 443, 520, 530, 698, 729
HpyCH4III ACNGT 3 cut(s) 362, 563, 603
HpyCH4IV ACGT 2 cut(s) 267, 701
HpyCH4V TGCA 4 cut(s) 257, 436, 490, 684
HpyF10VI GCNNNNNNNGC 2 cut(s) 306, 537
HpyF3I CTNAG 5 cut(s) 93, 168, 354, 378, 800
HpySE526I ACGT 2 cut(s) 267, 701
Hsp92I GRCGYC 2 cut(s) 17, 430
Hsp92II CATG 2 cut(s) 684, 774
Ksp22I TGATCA 1 cut(s) 28
Kzo9I GATC 4 cut(s) 28, 136, 156, 472
LmnI GCTCC 1 cut(s) 297
LpnPI CCDG 6 cut(s) 277, 390, 411, 430, 738, 798
Lsp1109I GCAGC 2 cut(s) 502, 543
LweI GCATC 1 cut(s) 606
MaeI CTAG 8 cut(s) 57, 66, 119, 345, 413, 572, 620, 792
MaeII ACGT 2 cut(s) 267, 701
MalI GATC 4 cut(s) 30, 138, 158, 474
MboI GATC 4 cut(s) 28, 136, 156, 472
MboII GAAGA 3 cut(s) 56, 151, 467
MflI RGATCY 2 cut(s) 136, 156
MluCI AATT 4 cut(s) 73, 127, 335, 672
MlyI GAGTC 1 cut(s) 790
MmeI TCCRAC 1 cut(s) 303
MnlI CCTC 9 cut(s) 216, 373, 398, 419, 477, 579, 634, 689, 735
MroXI GAANNNNTTC 3 cut(s) 73, 77, 459
MseI TTAA 2 cut(s) 87, 387
MspI CCGG 1 cut(s) 785
MspR9I CCNGG 1 cut(s) 785
MwoI GCNNNNNNNGC 2 cut(s) 306, 537
NciI CCSGG 1 cut(s) 785
NcoI CCATGG 1 cut(s) 770
NdeII GATC 4 cut(s) 28, 136, 156, 472
NheI GCTAGC 1 cut(s) 619
NlaIII CATG 2 cut(s) 684, 774
NlaIV GGNNCC 1 cut(s) 789
NmeAIII GCCGAG 1 cut(s) 187
NspI RCATGY 1 cut(s) 684
PdmI GAANNNNTTC 3 cut(s) 73, 77, 459
PfeI GAWTC 1 cut(s) 239
PkrI GCNGC 2 cut(s) 492, 533
PleI GAGTC 1 cut(s) 790
PpsI GAGTC 1 cut(s) 790
Ppu21I YACGTR 1 cut(s) 268
Psp1406I AACGTT 1 cut(s) 701
PspN4I GGNNCC 1 cut(s) 789
PsrI GAACNNNNNNTAC 2 cut(s) 46, 78
PstI CTGCAG 2 cut(s) 438, 492
PsuI RGATCY 2 cut(s) 136, 156
RsaI GTAC 5 cut(s) 61, 290, 359, 605, 747
RsaNI GTAC 5 cut(s) 60, 289, 358, 604, 746
SaqAI TTAA 2 cut(s) 87, 387
SatI GCNGC 2 cut(s) 491, 532
Sau3AI GATC 4 cut(s) 28, 136, 156, 472
ScaI AGTACT 1 cut(s) 61
SchI GAGTC 1 cut(s) 790
ScrFI CCNGG 1 cut(s) 785
SetI ASST 8 cut(s) 15, 111, 270, 274, 577, 625, 690, 704
SfaNI GCATC 1 cut(s) 606
SfcI CTRYAG 2 cut(s) 434, 488
SmlI CTYRAG 2 cut(s) 317, 468
SmoI CTYRAG 2 cut(s) 317, 468
SnaBI TACGTA 1 cut(s) 268
SpeI ACTAGT 3 cut(s) 56, 118, 344
Sse9I AATT 4 cut(s) 73, 127, 335, 672
SsiI CCGC 3 cut(s) 295, 374, 423
SspI AATATT 1 cut(s) 586
SspMI CTAG 8 cut(s) 57, 66, 119, 345, 413, 572, 620, 792
StyD4I CCNGG 1 cut(s) 783
StyI CCWWGG 2 cut(s) 770, 791
TaaI ACNGT 3 cut(s) 362, 563, 603
TaiI ACGT 2 cut(s) 270, 704
TaqI TCGA 1 cut(s) 153
TasI AATT 4 cut(s) 73, 127, 335, 672
TatI WGTACW 2 cut(s) 59, 288
TfiI GAWTC 1 cut(s) 239
Tru1I TTAA 2 cut(s) 87, 387
Tru9I TTAA 2 cut(s) 87, 387
TscAI CASTG 2 cut(s) 568, 755
TseI GCWGC 2 cut(s) 490, 531
TspDTI ATGAA 7 cut(s) 57, 70, 120, 137, 210, 294, 355
TspRI CASTG 2 cut(s) 568, 755
XapI RAATTY 3 cut(s) 73, 127, 335
XceI RCATGY 1 cut(s) 684
XmaJI CCTAGG 1 cut(s) 791
XmnI GAANNNNTTC 3 cut(s) 73, 77, 459
XspI CTAG 8 cut(s) 57, 66, 119, 345, 413, 572, 620, 792
ZrmI AGTACT 1 cut(s) 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.