Rmu_sc0036096.1_g000001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0036096.1
OG0000270
Physical Location & Seq
Reverse (-)
185 .. 1201
1017 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0036096.1_g000001.1.cds

Sequence Viewer

Length: 1017 bp
atgttgtcaaaacgacaccatttggtatcatggaaggaatcacaccttttttctttcctccctggtttgcaaggtcatgatgatcacaaagcttttgtgctagggttttgtaatgacgtagccctgtggtgctatcgacacgattactacgtctgcaatcactacaacaagcagtgggtccgtcttcctcccacaatctggacaggaggacccgtagggttcatttgtgatccctactactactataaggatgatcaagatggcactaatattagtgttaaggttaatgccgactgtaggtggagggttgtgagaatccttccaaatccaatattactacatggttttaacgtggagatcttctcttccgagacgggtcaatggagagtgtacaagtgggctaatgtgttatgcccacaacaagactttagctcattccaaactagaagttcaggtgttgcttacaatggaaagttgtattggtggattcatgacggctttactgttgagttagatccctttagtgttggtactagtagtaccggtgaaggaactatcaataaatgtcgtttcattgattccttcaaagagagatttaatggaccaatgcacataggtttgtgccgagggcgtttgcggatgtgccttggtcatattgctcttggtgttcatgctccattcactatttgggagttgaaagaaaacaaaggaaatggaactttggaatggtgtttggtgtcggaccaaatttttcttcaccagatggttcccaaaagtcgtttaatcagtatacgcagagagcgctatgaagtgtttactgtgataggtttccatccagatgaggaggatatcttgtactttacaatcattgactatgtagtgatgtgcaatgttcgtgagaagaccttagagattgctgcagagattccatctcgagaactaatttggggcatggcaggcgccttcccgctgttccaaccacattggccgacaccagtttccaaactagattactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

338

Amino Acids

39.34

Weight (kDa)

6.93

Isoelectric Point (pI)

42.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 959
AccB7I CCANNNNNTGG 1 cut(s) 198
AccI GTMKAC 1 cut(s) 790
AciI CCGC 2 cut(s) 637, 968
AclWI GGATC 2 cut(s) 224, 509
AcoI YGGCCR 1 cut(s) 986
AcsI RAATTY 1 cut(s) 747
AcyI GRCGYC 1 cut(s) 960
AfaI GTAC 4 cut(s) 392, 532, 541, 857
AfeI AGCGCT 1 cut(s) 803
AfiI CCNNNNNNNGG 2 cut(s) 198, 297
AgeI ACCGGT 1 cut(s) 542
AgsI TTSAA 2 cut(s) 586, 697
AhlI ACTAGT 1 cut(s) 533
AjnI CCWGG 1 cut(s) 61
AjuI GAANNNNNNNTTGG 4 cut(s) 463, 495, 738, 770
AluBI AGCT 2 cut(s) 92, 432
AluI AGCT 2 cut(s) 92, 432
Alw26I GTCTC 1 cut(s) 365
AlwI GGATC 2 cut(s) 224, 509
Ama87I CYCGRG 1 cut(s) 933
Aor51HI AGCGCT 1 cut(s) 803
AoxI GGCC 1 cut(s) 986
ApeKI GCWGC 1 cut(s) 917
ApoI RAATTY 1 cut(s) 747
AsiGI ACCGGT 1 cut(s) 542
AspLEI GCGC 2 cut(s) 804, 962
AspS9I GGNCC 4 cut(s) 178, 209, 602, 742
AsuHPI GGTGA 2 cut(s) 557, 749
AvaI CYCGRG 1 cut(s) 933
AvaII GGWCC 4 cut(s) 178, 209, 602, 742
BanI GGYRCC 1 cut(s) 959
BbsI GAAGAC 2 cut(s) 176, 908
BbvI GCAGC 1 cut(s) 904
BccI CCATC 4 cut(s) 254, 757, 840, 937
BceAI ACGGC 1 cut(s) 511
BciT130I CCWGG 1 cut(s) 63
BclI TGATCA 2 cut(s) 82, 253
BcoDI GTCTC 1 cut(s) 365
BcuI ACTAGT 1 cut(s) 533
BfaI CTAG 4 cut(s) 101, 444, 534, 1007
BfmI CTRYAG 2 cut(s) 295, 918
BfoI RGCGCY 2 cut(s) 805, 963
BglII AGATCT 1 cut(s) 357
BisI GCNGC 1 cut(s) 918
BlsI GCNGC 1 cut(s) 919
Bme1390I CCNGG 1 cut(s) 63
Bme18I GGWCC 4 cut(s) 178, 209, 602, 742
BmeT110I CYCGRG 1 cut(s) 933
BmgT120I GGNCC 4 cut(s) 178, 209, 602, 742
BmiI GGNNCC 4 cut(s) 179, 211, 768, 961
BmrFI CCNGG 1 cut(s) 63
BpiI GAAGAC 2 cut(s) 176, 908
BplI GAGNNNNNCTC 2 cut(s) 347, 379
BsaHI GRCGYC 1 cut(s) 960
BsaJI CCNNGG 3 cut(s) 61, 625, 646
BsaWI WCCGGW 1 cut(s) 542
BsaXI ACNNNNNCTCC 2 cut(s) 198, 228
Bsc4I CCNNNNNNNGG 2 cut(s) 198, 297
Bse118I RCCGGY 1 cut(s) 542
Bse1I ACTGG 1 cut(s) 995
Bse3DI GCAATG 1 cut(s) 895
BseBI CCWGG 1 cut(s) 63
BseDI CCNNGG 3 cut(s) 61, 625, 646
BseGI GGATG 3 cut(s) 256, 645, 832
BseLI CCNNNNNNNGG 2 cut(s) 198, 297
BseMI GCAATG 1 cut(s) 895
BseNI ACTGG 1 cut(s) 995
BseRI GAGGAG 1 cut(s) 857
BseXI GCAGC 1 cut(s) 904
BshFI GGCC 1 cut(s) 988
BshNI GGYRCC 1 cut(s) 959
BshTI ACCGGT 1 cut(s) 542
BsiHKCI CYCGRG 1 cut(s) 933
BsiSI CCGG 1 cut(s) 543
BslI CCNNNNNNNGG 2 cut(s) 198, 297
BsmAI GTCTC 1 cut(s) 365
BsmBI CGTCTC 1 cut(s) 365
BsnI GGCC 1 cut(s) 988
BsoBI CYCGRG 1 cut(s) 933
Bsp1407I TGTACA 1 cut(s) 390
Bsp143I GATC 5 cut(s) 82, 229, 253, 357, 514
BspACI CCGC 2 cut(s) 637, 968
BspANI GGCC 1 cut(s) 988
BspHI TCATGA 2 cut(s) 76, 490
BspLI GGNNCC 4 cut(s) 179, 211, 768, 961
BspMAI CTGCAG 1 cut(s) 922
BspPI GGATC 2 cut(s) 224, 509
BspT107I GGYRCC 1 cut(s) 959
BsrDI GCAATG 1 cut(s) 895
BsrFI RCCGGY 1 cut(s) 542
BsrGI TGTACA 1 cut(s) 390
BsrI ACTGG 1 cut(s) 995
BssAI RCCGGY 1 cut(s) 542
BssECI CCNNGG 3 cut(s) 61, 625, 646
BssMI GATC 5 cut(s) 82, 229, 253, 357, 514
BssNAI GTATAC 1 cut(s) 791
BssNI GRCGYC 1 cut(s) 960
BssT1I CCWWGG 1 cut(s) 646
Bst1107I GTATAC 1 cut(s) 791
Bst2UI CCWGG 1 cut(s) 63
Bst4CI ACNGT 3 cut(s) 296, 505, 820
Bst6I CTCTTC 1 cut(s) 370
BstACI GRCGYC 1 cut(s) 960
BstAUI TGTACA 1 cut(s) 390
BstC8I GCNNGC 1 cut(s) 958
BstDEI CTNAG 1 cut(s) 907
BstF5I GGATG 3 cut(s) 256, 645, 832
BstH2I RGCGCY 2 cut(s) 805, 963
BstHHI GCGC 2 cut(s) 804, 962
BstKTI GATC 5 cut(s) 85, 232, 256, 360, 517
BstMAI GTCTC 1 cut(s) 365
BstMBI GATC 5 cut(s) 82, 229, 253, 357, 514
BstMWI GCNNNNNNNGC 2 cut(s) 801, 957
BstNI CCWGG 1 cut(s) 63
BstSCI CCNGG 1 cut(s) 61
BstSFI CTRYAG 2 cut(s) 295, 918
BstV1I GCAGC 1 cut(s) 904
BstV2I GAAGAC 2 cut(s) 176, 908
BstX2I RGATCY 2 cut(s) 357, 514
BstYI RGATCY 2 cut(s) 357, 514
BstZ17I GTATAC 1 cut(s) 791
BsuRI GGCC 1 cut(s) 988
BtsCI GGATG 3 cut(s) 256, 645, 832
BtsI GCAGTG 1 cut(s) 179
BtsIMutI CAGTG 1 cut(s) 179
Cac8I GCNNGC 1 cut(s) 958
CciI TCATGA 2 cut(s) 76, 490
CfoI GCGC 2 cut(s) 804, 962
Cfr10I RCCGGY 1 cut(s) 542
Cfr13I GGNCC 4 cut(s) 178, 209, 602, 742
Csp6I GTAC 4 cut(s) 391, 531, 540, 856
CspAI ACCGGT 1 cut(s) 542
CviAII CATG 6 cut(s) 30, 77, 341, 491, 671, 952
CviJI RGCY 6 cut(s) 92, 122, 401, 432, 498, 988
CviKI_1 RGCY 6 cut(s) 92, 122, 401, 432, 498, 988
CviQI GTAC 4 cut(s) 391, 531, 540, 856
DdeI CTNAG 1 cut(s) 907
DinI GGCGCC 1 cut(s) 961
DpnI GATC 5 cut(s) 84, 231, 255, 359, 516
DpnII GATC 5 cut(s) 82, 229, 253, 357, 514
EaeI YGGCCR 1 cut(s) 986
Eam1104I CTCTTC 1 cut(s) 370
EarI CTCTTC 1 cut(s) 370
Eco130I CCWWGG 1 cut(s) 646
Eco32I GATATC 1 cut(s) 850
Eco47I GGWCC 4 cut(s) 178, 209, 602, 742
Eco47III AGCGCT 1 cut(s) 803
Eco88I CYCGRG 1 cut(s) 933
EcoO109I RGGNCCY 1 cut(s) 209
EcoRII CCWGG 1 cut(s) 61
EcoRV GATATC 1 cut(s) 850
EcoT14I CCWWGG 1 cut(s) 646
EgeI GGCGCC 1 cut(s) 961
EheI GGCGCC 1 cut(s) 961
ErhI CCWWGG 1 cut(s) 646
Esp3I CGTCTC 1 cut(s) 365
FaeI CATG 6 cut(s) 33, 80, 344, 494, 674, 955
FatI CATG 6 cut(s) 29, 76, 340, 490, 670, 951
FauI CCCGC 1 cut(s) 975
FbaI TGATCA 2 cut(s) 82, 253
FblI GTMKAC 1 cut(s) 790
Fnu4HI GCNGC 1 cut(s) 918
FokI GGATG 3 cut(s) 263, 652, 819
Fsp4HI GCNGC 1 cut(s) 918
FspBI CTAG 4 cut(s) 101, 444, 534, 1007
GlaI GCGC 2 cut(s) 803, 961
GluI GCNGC 1 cut(s) 918
HaeII RGCGCY 2 cut(s) 805, 963
HaeIII GGCC 1 cut(s) 988
HapII CCGG 1 cut(s) 543
HhaI GCGC 2 cut(s) 804, 962
Hin1I GRCGYC 1 cut(s) 960
Hin1II CATG 6 cut(s) 33, 80, 344, 494, 674, 955
Hin6I GCGC 2 cut(s) 802, 960
HinP1I GCGC 2 cut(s) 802, 960
HindIII AAGCTT 1 cut(s) 90
HinfI GANTC 5 cut(s) 38, 315, 487, 578, 925
HpaII CCGG 1 cut(s) 543
HphI GGTGA 2 cut(s) 557, 749
Hpy166II GTNNAC 3 cut(s) 391, 791, 816
Hpy188I TCNGA 2 cut(s) 370, 742
Hpy188III TCNNGA 8 cut(s) 77, 199, 257, 491, 836, 896, 933, 935
Hpy8I GTNNAC 3 cut(s) 391, 791, 816
HpyAV CCTTC 5 cut(s) 28, 329, 542, 592, 973
HpyCH4III ACNGT 3 cut(s) 296, 505, 820
HpyCH4IV ACGT 3 cut(s) 117, 150, 351
HpyCH4V TGCA 5 cut(s) 70, 156, 610, 888, 920
HpyF10VI GCNNNNNNNGC 2 cut(s) 801, 957
HpyF3I CTNAG 1 cut(s) 907
HpySE526I ACGT 3 cut(s) 117, 150, 351
Hsp92I GRCGYC 1 cut(s) 960
Hsp92II CATG 6 cut(s) 33, 80, 344, 494, 674, 955
HspAI GCGC 2 cut(s) 802, 960
KasI GGCGCC 1 cut(s) 959
Ksp22I TGATCA 2 cut(s) 82, 253
Kzo9I GATC 5 cut(s) 82, 229, 253, 357, 514
LmnI GCTCC 1 cut(s) 679
Lsp1109I GCAGC 1 cut(s) 904
MaeI CTAG 4 cut(s) 101, 444, 534, 1007
MaeII ACGT 3 cut(s) 117, 150, 351
MalI GATC 5 cut(s) 84, 231, 255, 359, 516
MboI GATC 5 cut(s) 82, 229, 253, 357, 514
MboII GAAGA 5 cut(s) 176, 352, 357, 746, 913
MflI RGATCY 2 cut(s) 357, 514
MluCI AATT 2 cut(s) 747, 942
Mly113I GGCGCC 1 cut(s) 960
MmeI TCCRAC 2 cut(s) 720, 1000
MnlI CCTC 7 cut(s) 68, 198, 200, 297, 620, 835, 838
MseI TTAA 5 cut(s) 279, 285, 348, 597, 782
MslI CAYNNNNRTG 1 cut(s) 837
MspA1I CMGCKG 1 cut(s) 970
MspI CCGG 1 cut(s) 543
MspR9I CCNGG 1 cut(s) 63
MvaI CCWGG 1 cut(s) 63
MwoI GCNNNNNNNGC 2 cut(s) 801, 957
NarI GGCGCC 1 cut(s) 960
NdeII GATC 5 cut(s) 82, 229, 253, 357, 514
NlaIII CATG 6 cut(s) 33, 80, 344, 494, 674, 955
NlaIV GGNNCC 4 cut(s) 179, 211, 768, 961
NmeAIII GCCGAG 1 cut(s) 650
PaeR7I CTCGAG 1 cut(s) 933
PagI TCATGA 2 cut(s) 76, 490
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PfeI GAWTC 5 cut(s) 38, 315, 487, 578, 925
PflMI CCANNNNNTGG 1 cut(s) 198
PinAI ACCGGT 1 cut(s) 542
PkrI GCNGC 1 cut(s) 919
PluTI GGCGCC 1 cut(s) 963
PpuMI RGGWCCY 1 cut(s) 209
Psp5II RGGWCCY 1 cut(s) 209
Psp6I CCWGG 1 cut(s) 61
PspGI CCWGG 1 cut(s) 61
PspN4I GGNNCC 4 cut(s) 179, 211, 768, 961
PspPI GGNCC 4 cut(s) 178, 209, 602, 742
PspPPI RGGWCCY 1 cut(s) 209
PstI CTGCAG 1 cut(s) 922
PsuI RGATCY 2 cut(s) 357, 514
RsaI GTAC 4 cut(s) 392, 532, 541, 857
RsaNI GTAC 4 cut(s) 391, 531, 540, 856
RseI CAYNNNNRTG 1 cut(s) 837
SaqAI TTAA 5 cut(s) 279, 285, 348, 597, 782
SatI GCNGC 1 cut(s) 918
Sau3AI GATC 5 cut(s) 82, 229, 253, 357, 514
Sau96I GGNCC 4 cut(s) 178, 209, 602, 742
ScrFI CCNGG 1 cut(s) 63
SfcI CTRYAG 2 cut(s) 295, 918
SfoI GGCGCC 1 cut(s) 961
Sfr274I CTCGAG 1 cut(s) 933
SinI GGWCC 4 cut(s) 178, 209, 602, 742
SlaI CTCGAG 1 cut(s) 933
SmiMI CAYNNNNRTG 1 cut(s) 837
SmlI CTYRAG 1 cut(s) 933
SmoI CTYRAG 1 cut(s) 933
SpeI ACTAGT 1 cut(s) 533
Sse9I AATT 2 cut(s) 747, 942
SsiI CCGC 2 cut(s) 637, 968
SspDI GGCGCC 1 cut(s) 959
SspI AATATT 2 cut(s) 271, 333
SspMI CTAG 4 cut(s) 101, 444, 534, 1007
StyD4I CCNGG 1 cut(s) 61
StyI CCWWGG 1 cut(s) 646
TaaI ACNGT 3 cut(s) 296, 505, 820
TaiI ACGT 3 cut(s) 120, 153, 354
TaqI TCGA 2 cut(s) 136, 934
TasI AATT 2 cut(s) 747, 942
TatI WGTACW 2 cut(s) 390, 855
TfiI GAWTC 5 cut(s) 38, 315, 487, 578, 925
Tru1I TTAA 5 cut(s) 279, 285, 348, 597, 782
Tru9I TTAA 5 cut(s) 279, 285, 348, 597, 782
TscAI CASTG 1 cut(s) 179
TseI GCWGC 1 cut(s) 917
TspDTI ATGAA 5 cut(s) 211, 479, 562, 659, 822
TspGWI ACGGA 1 cut(s) 170
TspRI CASTG 1 cut(s) 179
Van91I CCANNNNNTGG 1 cut(s) 198
VpaK11BI GGWCC 4 cut(s) 178, 209, 602, 742
XapI RAATTY 1 cut(s) 747
XcmI CCANNNNNNNNNTGG 1 cut(s) 684
XhoI CTCGAG 1 cut(s) 933
XmiI GTMKAC 1 cut(s) 790
XspI CTAG 4 cut(s) 101, 444, 534, 1007
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.