Prupe.5G070600_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0000270
Physical Location & Seq
Forward (+)
8489069 .. 8490969
1901 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G070600.1

Sequence Viewer

Length: 1221 bp
ATGATGATGAATGATAGTGTTGATGATCTCCCAGAGGTTTTATTGGTTGAAATAATTTGTCGACTTTCTTGTATTAAGTTGGTTTTTCAATGCAAGTGCGTGTCCAAGCGTTGGTGTGAACTCATCTCTAGTTCTCATTTTGTTGGGCAATATGTACGTCGCCAACGTGATTTGAAAACGCCCATTTTAGGTACAGTAGTTGTAGACAATGGAACATTCTTTCCGGTGGAAAACGAGGATGGTCTGATGAGTTTGCAGCTACCTGTTATTTCAGAAGCCGCACCAGAACAAAAATTATTTGTGGTAGGGGCGTGCAACGACTTAGTTTTGTGCTGCCCAAGCGAACTTGATCAACGTGATTATTACATTTGTAATCCATACACCAAGAAATGGGTTGCTCTTCCTCCCCCTCCTCGAATCCATAATTGCGTAAGCGTAGGGTTCATTTGTGATCCCTACTACAGCTACAACTCATCTTCCACCTTCGATGATGAGGTTTCCATTAATGCTGAATATAGGTGGAGGGTTGTGCGACTACGTCAAGAGTTCTATGTGGACATCTTCTTTTCTGAGACCGGTGAATGGAGGGAGTCCGCTAATGTGGTATGCGGCCTACGAAATTATTTTGATATCATAACTGCTGGCGTTGCTTGCAATGGGAAGTTGTATTTTTCAGGTTCCGATCATGCATCCTCCTATATTCTGGAGTTGGATCCCTTCCAAGATATCAGTAATATCAGTACTACTAATGGCAATCATATTATTGTTGACAAATGTCGGTTCAGTCTGGCACCTCTTGATATGTCGTCTGAAGTGCGGGGATATTCCATTTCGATGTATCGGGTTCTTGGTGCATGTCGAGGGCATTTGCGGGTGACCGAGTTTGTGCTCGGTAATCATTTGAGTGTCTGGGAGTTGGATGCAGGCGATGATATTTTGAAATGGCGTTTGGTGGTCGACAAAGTTCCCTTCTTCCAGATGGATTCTTCCTATCATGATGACGTTTCTATGACGCCTCTAGATGAGGTGGCAAAAACTGCGATAGGTTTCCACCCGACTATCGAGGATACCATCTACGTAGATGCTCACAAAATTGTCAGGTGGAACTTTGGTGCAGGAATGTTTGAGTTAGTTCCAAATCGTCGGGGCTCTAGTTGGTCTCCCAATTACATCCACCCATTTGTGCTCCCGTGGTGGCCCACACCGGTTCCTAGCCTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

407

Amino Acids

46.26

Weight (kDa)

5.1

Isoelectric Point (pI)

46.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 790
AccB7I CCANNNNNTGG 2 cut(s) 111, 390
AccI GTMKAC 3 cut(s) 61, 204, 957
AciI CCGC 5 cut(s) 279, 594, 609, 817, 871
AclWI GGATC 3 cut(s) 446, 707, 720
AcuI CTGAAG 1 cut(s) 831
AcyI GRCGYC 1 cut(s) 1013
AfaI GTAC 3 cut(s) 156, 193, 742
AfiI CCNNNNNNNGG 4 cut(s) 111, 188, 390, 582
AgeI ACCGGT 2 cut(s) 575, 1204
AgsI TTSAA 4 cut(s) 50, 89, 175, 940
AjuI GAANNNNNNNTTGG 2 cut(s) 932, 964
AloI GAACNNNNNNTCC 2 cut(s) 205, 237
AluBI AGCT 2 cut(s) 259, 465
AluI AGCT 2 cut(s) 259, 465
Alw21I GWGCWC 2 cut(s) 891, 1188
Alw26I GTCTC 2 cut(s) 566, 1164
AlwI GGATC 3 cut(s) 446, 707, 720
AoxI GGCC 2 cut(s) 610, 1196
ApeKI GCWGC 2 cut(s) 256, 333
AseI ATTAAT 1 cut(s) 504
AsiGI ACCGGT 2 cut(s) 575, 1204
AspS9I GGNCC 1 cut(s) 1197
AsuHPI GGTGA 2 cut(s) 590, 886
BaeI ACNNNNGTAYC 2 cut(s) 183, 216
BamHI GGATCC 1 cut(s) 712
BanI GGYRCC 1 cut(s) 790
BanII GRGCYC 1 cut(s) 1151
Bbv12I GWGCWC 2 cut(s) 891, 1188
BbvI GCAGC 2 cut(s) 268, 320
BccI CCATC 3 cut(s) 233, 973, 1079
BciVI GTATCC 1 cut(s) 1060
BclI TGATCA 1 cut(s) 349
BcoDI GTCTC 2 cut(s) 566, 1164
BfaI CTAG 4 cut(s) 129, 1019, 1152, 1212
BfmI CTRYAG 1 cut(s) 460
BfuI GTATCC 1 cut(s) 1060
BisI GCNGC 4 cut(s) 257, 279, 334, 610
BlsI GCNGC 4 cut(s) 258, 280, 335, 611
BmcAI AGTACT 1 cut(s) 742
BmgT120I GGNCC 1 cut(s) 1197
BmiI GGNNCC 4 cut(s) 679, 714, 792, 1209
BmsI GCATC 3 cut(s) 698, 910, 1072
BoxI GACNNNNGTC 1 cut(s) 774
BpmI CTGGAG 1 cut(s) 725
BsaAI YACGTR 1 cut(s) 1078
BsaHI GRCGYC 1 cut(s) 1013
BsaI GGTCTC 2 cut(s) 566, 1164
BsaJI CCNNGG 1 cut(s) 1190
BsaWI WCCGGW 3 cut(s) 223, 575, 1204
Bsc4I CCNNNNNNNGG 4 cut(s) 111, 188, 390, 582
Bse118I RCCGGY 2 cut(s) 575, 1204
Bse3DI GCAATG 1 cut(s) 661
BseDI CCNNGG 1 cut(s) 1190
BseGI GGATG 4 cut(s) 244, 689, 925, 1170
BseLI CCNNNNNNNGG 4 cut(s) 111, 188, 390, 582
BseMI GCAATG 1 cut(s) 661
BseMII CTCAG 1 cut(s) 561
BseRI GAGGAG 1 cut(s) 402
BseXI GCAGC 2 cut(s) 268, 320
BsgI GTGCAG 1 cut(s) 1134
BshFI GGCC 2 cut(s) 612, 1198
BshNI GGYRCC 1 cut(s) 790
BshTI ACCGGT 2 cut(s) 575, 1204
BsiHKAI GWGCWC 2 cut(s) 891, 1188
BsiSI CCGG 3 cut(s) 224, 576, 1205
BslI CCNNNNNNNGG 4 cut(s) 111, 188, 390, 582
BsmAI GTCTC 2 cut(s) 566, 1164
BsnI GGCC 2 cut(s) 612, 1198
Bso31I GGTCTC 2 cut(s) 566, 1164
Bsp1286I GDGCHC 3 cut(s) 891, 1151, 1188
Bsp143I GATC 5 cut(s) 25, 349, 451, 682, 712
BspACI CCGC 5 cut(s) 279, 594, 609, 817, 871
BspANI GGCC 2 cut(s) 612, 1198
BspCNI CTCAG 1 cut(s) 562
BspHI TCATGA 1 cut(s) 994
BspLI GGNNCC 4 cut(s) 679, 714, 792, 1209
BspPI GGATC 3 cut(s) 446, 707, 720
BspQI GCTCTTC 1 cut(s) 405
BspT107I GGYRCC 1 cut(s) 790
BspTNI GGTCTC 2 cut(s) 566, 1164
BsrDI GCAATG 1 cut(s) 661
BsrFI RCCGGY 2 cut(s) 575, 1204
BssAI RCCGGY 2 cut(s) 575, 1204
BssECI CCNNGG 1 cut(s) 1190
BssMI GATC 5 cut(s) 25, 349, 451, 682, 712
BssNI GRCGYC 1 cut(s) 1013
Bst4CI ACNGT 1 cut(s) 196
Bst6I CTCTTC 1 cut(s) 405
BstACI GRCGYC 1 cut(s) 1013
BstAPI GCANNNNNTGC 1 cut(s) 1037
BstBAI YACGTR 1 cut(s) 1078
BstC8I GCNNGC 4 cut(s) 313, 643, 652, 925
BstDEI CTNAG 2 cut(s) 322, 570
BstDSI CCRYGG 1 cut(s) 1190
BstEII GGTNACC 1 cut(s) 874
BstF5I GGATG 4 cut(s) 244, 689, 925, 1170
BstKTI GATC 5 cut(s) 28, 352, 454, 685, 715
BstMAI GTCTC 2 cut(s) 566, 1164
BstMBI GATC 5 cut(s) 25, 349, 451, 682, 712
BstMWI GCNNNNNNNGC 4 cut(s) 339, 647, 651, 1037
BstNSI RCATGY 1 cut(s) 858
BstPAI GACNNNNGTC 1 cut(s) 774
BstPI GGTNACC 1 cut(s) 874
BstSFI CTRYAG 1 cut(s) 460
BstSNI TACGTA 1 cut(s) 1078
BstV1I GCAGC 2 cut(s) 268, 320
BstX2I RGATCY 1 cut(s) 712
BstYI RGATCY 1 cut(s) 712
BsuI GTATCC 1 cut(s) 1060
BsuRI GGCC 2 cut(s) 612, 1198
BtgI CCRYGG 1 cut(s) 1190
BtgZI GCGATG 1 cut(s) 942
BtsCI GGATG 4 cut(s) 244, 689, 925, 1170
Cac8I GCNNGC 4 cut(s) 313, 643, 652, 925
CciI TCATGA 1 cut(s) 994
Cfr10I RCCGGY 2 cut(s) 575, 1204
Cfr13I GGNCC 1 cut(s) 1197
CseI GACGC 1 cut(s) 1021
Csp6I GTAC 3 cut(s) 155, 192, 741
CspAI ACCGGT 2 cut(s) 575, 1204
CviAII CATG 3 cut(s) 686, 855, 995
CviJI RGCY 7 cut(s) 259, 278, 465, 612, 1149, 1198, 1215
CviKI_1 RGCY 7 cut(s) 259, 278, 465, 612, 1149, 1198, 1215
CviQI GTAC 3 cut(s) 155, 192, 741
DdeI CTNAG 2 cut(s) 322, 570
DpnI GATC 5 cut(s) 27, 351, 453, 684, 714
DpnII GATC 5 cut(s) 25, 349, 451, 682, 712
Eam1104I CTCTTC 1 cut(s) 405
EarI CTCTTC 1 cut(s) 405
Eco105I TACGTA 1 cut(s) 1078
Eco24I GRGCYC 1 cut(s) 1151
Eco31I GGTCTC 2 cut(s) 566, 1164
Eco32I GATATC 2 cut(s) 631, 727
Eco57I CTGAAG 1 cut(s) 831
Eco91I GGTNACC 1 cut(s) 874
EcoO65I GGTNACC 1 cut(s) 874
EcoRV GATATC 2 cut(s) 631, 727
EcoT22I ATGCAT 1 cut(s) 691
EcoT38I GRGCYC 1 cut(s) 1151
FaeI CATG 3 cut(s) 689, 858, 998
FatI CATG 3 cut(s) 685, 854, 994
FauI CCCGC 2 cut(s) 810, 864
FbaI TGATCA 1 cut(s) 349
FblI GTMKAC 3 cut(s) 61, 204, 957
Fnu4HI GCNGC 4 cut(s) 257, 279, 334, 610
FokI GGATG 4 cut(s) 251, 676, 932, 1157
FriOI GRGCYC 1 cut(s) 1151
Fsp4HI GCNGC 4 cut(s) 257, 279, 334, 610
FspBI CTAG 4 cut(s) 129, 1019, 1152, 1212
GluI GCNGC 4 cut(s) 257, 279, 334, 610
GsuI CTGGAG 1 cut(s) 725
HaeIII GGCC 2 cut(s) 612, 1198
HapII CCGG 3 cut(s) 224, 576, 1205
HgaI GACGC 1 cut(s) 1021
Hin1I GRCGYC 1 cut(s) 1013
Hin1II CATG 3 cut(s) 689, 858, 998
HincII GTYRAC 3 cut(s) 62, 769, 958
HindII GTYRAC 3 cut(s) 62, 769, 958
HinfI GANTC 3 cut(s) 417, 590, 983
HpaII CCGG 3 cut(s) 224, 576, 1205
HphI GGTGA 2 cut(s) 590, 886
Hpy166II GTNNAC 6 cut(s) 62, 119, 205, 556, 769, 958
Hpy188I TCNGA 5 cut(s) 246, 274, 571, 682, 811
Hpy188III TCNNGA 6 cut(s) 542, 704, 797, 976, 995, 1019
Hpy8I GTNNAC 6 cut(s) 62, 119, 205, 556, 769, 958
Hpy99I CGWCG 2 cut(s) 162, 1146
HpyAV CCTTC 3 cut(s) 493, 727, 979
HpyCH4III ACNGT 1 cut(s) 196
HpyCH4IV ACGT 6 cut(s) 157, 166, 355, 538, 1002, 1077
HpyCH4V TGCA 8 cut(s) 93, 256, 315, 654, 689, 854, 923, 1115
HpyF10VI GCNNNNNNNGC 4 cut(s) 339, 647, 651, 1037
HpyF3I CTNAG 2 cut(s) 322, 570
HpySE526I ACGT 6 cut(s) 157, 166, 355, 538, 1002, 1077
Hsp92I GRCGYC 1 cut(s) 1013
Hsp92II CATG 3 cut(s) 689, 858, 998
Ksp22I TGATCA 1 cut(s) 349
Kzo9I GATC 5 cut(s) 25, 349, 451, 682, 712
LguI GCTCTTC 1 cut(s) 405
LmnI GCTCC 1 cut(s) 1191
Lsp1109I GCAGC 2 cut(s) 268, 320
LweI GCATC 3 cut(s) 698, 910, 1072
MaeI CTAG 4 cut(s) 129, 1019, 1152, 1212
MaeII ACGT 6 cut(s) 157, 166, 355, 538, 1002, 1077
MaeIII GTNAC 1 cut(s) 874
MalI GATC 5 cut(s) 27, 351, 453, 684, 714
MboI GATC 5 cut(s) 25, 349, 451, 682, 712
MboII GAAGA 5 cut(s) 392, 468, 553, 964, 978
MflI RGATCY 1 cut(s) 712
MhlI GDGCHC 3 cut(s) 891, 1151, 1188
MluCI AATT 6 cut(s) 54, 293, 424, 619, 1092, 1165
MlyI GAGTC 1 cut(s) 599
MmeI TCCRAC 2 cut(s) 690, 897
Mph1103I ATGCAT 1 cut(s) 691
MseI TTAA 2 cut(s) 75, 504
MslI CAYNNNNRTG 2 cut(s) 833, 903
MspI CCGG 3 cut(s) 224, 576, 1205
MwoI GCNNNNNNNGC 4 cut(s) 339, 647, 651, 1037
NdeII GATC 5 cut(s) 25, 349, 451, 682, 712
NlaIII CATG 3 cut(s) 689, 858, 998
NlaIV GGNNCC 4 cut(s) 679, 714, 792, 1209
NmuCI GTSAC 1 cut(s) 874
NsiI ATGCAT 1 cut(s) 691
NspI RCATGY 1 cut(s) 858
PagI TCATGA 1 cut(s) 994
PciSI GCTCTTC 1 cut(s) 405
PcsI WCGNNNNNNNCGW 1 cut(s) 163
PfeI GAWTC 2 cut(s) 417, 983
PflFI GACNNNGTC 1 cut(s) 537
PflMI CCANNNNNTGG 2 cut(s) 111, 390
PinAI ACCGGT 2 cut(s) 575, 1204
PkrI GCNGC 4 cut(s) 258, 280, 335, 611
PleI GAGTC 1 cut(s) 598
PpsI GAGTC 1 cut(s) 598
Ppu21I YACGTR 1 cut(s) 1078
PshAI GACNNNNGTC 1 cut(s) 774
PshBI ATTAAT 1 cut(s) 504
PspEI GGTNACC 1 cut(s) 874
PspN4I GGNNCC 4 cut(s) 679, 714, 792, 1209
PspPI GGNCC 1 cut(s) 1197
PsuI RGATCY 1 cut(s) 712
PsyI GACNNNGTC 1 cut(s) 537
RsaI GTAC 3 cut(s) 156, 193, 742
RsaNI GTAC 3 cut(s) 155, 192, 741
RseI CAYNNNNRTG 2 cut(s) 833, 903
SalI GTCGAC 2 cut(s) 60, 956
SapI GCTCTTC 1 cut(s) 405
SaqAI TTAA 2 cut(s) 75, 504
SatI GCNGC 4 cut(s) 257, 279, 334, 610
Sau3AI GATC 5 cut(s) 25, 349, 451, 682, 712
Sau96I GGNCC 1 cut(s) 1197
ScaI AGTACT 1 cut(s) 742
SchI GAGTC 1 cut(s) 599
SduI GDGCHC 3 cut(s) 891, 1151, 1188
SfaNI GCATC 3 cut(s) 698, 910, 1072
SfcI CTRYAG 1 cut(s) 460
SmiMI CAYNNNNRTG 2 cut(s) 833, 903
SnaBI TACGTA 1 cut(s) 1078
Sse9I AATT 6 cut(s) 54, 293, 424, 619, 1092, 1165
SsiI CCGC 5 cut(s) 279, 594, 609, 817, 871
SspMI CTAG 4 cut(s) 129, 1019, 1152, 1212
TaaI ACNGT 1 cut(s) 196
TaiI ACGT 6 cut(s) 160, 169, 358, 541, 1005, 1080
TaqI TCGA 7 cut(s) 61, 415, 486, 833, 859, 957, 1062
TaqII GACCGA 1 cut(s) 893
TasI AATT 6 cut(s) 54, 293, 424, 619, 1092, 1165
TatI WGTACW 1 cut(s) 740
TauI GCSGC 2 cut(s) 281, 612
TfiI GAWTC 2 cut(s) 417, 983
Tru1I TTAA 2 cut(s) 75, 504
Tru9I TTAA 2 cut(s) 75, 504
TseFI GTSAC 1 cut(s) 874
TseI GCWGC 2 cut(s) 256, 333
Tsp45I GTSAC 1 cut(s) 874
TspDTI ATGAA 2 cut(s) 23, 433
Tth111I GACNNNGTC 1 cut(s) 537
Van91I CCANNNNNTGG 2 cut(s) 111, 390
VspI ATTAAT 1 cut(s) 504
XbaI TCTAGA 1 cut(s) 1018
XceI RCATGY 1 cut(s) 858
XmiI GTMKAC 3 cut(s) 61, 204, 957
XspI CTAG 4 cut(s) 129, 1019, 1152, 1212
ZrmI AGTACT 1 cut(s) 742
Zsp2I ATGCAT 1 cut(s) 691
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.