FvH4_6g10900

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000270
Physical Location & Seq
Reverse (-)
6534473 .. 6535220
748 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g10900.t1

Sequence Viewer

Length: 645 bp
ATGGAGAATGTTGGATGTATTTTTCCCACGAAAAAGATCAATGATTCCTGTACTAGTCTCGGTCATGGTTTCTATAACAGCCCTGTTGCTTACTATGGAAAATTGTATTGGTGGCGTGTGGATGGCTGCTATACCTTTGCTTTGGATCCCTTCACCGATAGCGGTAACCCTACTGCTAAGTGTAGTTTCAGAAAGGTTCCTGACCATGTAACTCTTTCTGGTATAGATTTAACTTATCTAGGTGTTTGTGGAGGACGCTTGAGGATGTGTGTGCTCACACCCCTGGGACGTGATGATCCATTCAGGGTTTGGGAGTTGAAAGGGGATGTAGAAGTAGAGGACAGCGCCTCCGTCGGAGGAGGCAGTGTCAAATGGCTAGCAGAGAGAATTTCTTTGCCTTGCAAAGATATTCCTTTCTTCTCCAAACAAACATGCTGCAGCATATATTGTTTGCTTACTTTGCTAGGTTTCTACCCGAATAATGAGGATATCATATATCAGAGTTTGGAAAGAGAAATTGTCGTGTGCAAGCTTTGTGGTGGTGGAACATTAGAGATGGTTAAGAAGATTCCATATACTGGCCGTGATATGGGGCAATGTGTCTTCCCAATGTTCCTCAACAACAACTGTTATAGCCTGCAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

215

Amino Acids

23.94

Weight (kDa)

6.12

Isoelectric Point (pI)

30.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 578
AciI CCGC 1 cut(s) 162
AclWI GGATC 3 cut(s) 140, 153, 290
AcoI YGGCCR 1 cut(s) 580
AcsI RAATTY 1 cut(s) 387
AfaI GTAC 1 cut(s) 52
AfiI CCNNNNNNNGG 2 cut(s) 578, 589
AgsI TTSAA 1 cut(s) 319
AhlI ACTAGT 1 cut(s) 53
AjiI CACGTC 1 cut(s) 290
AjnI CCWGG 1 cut(s) 282
AjuI GAANNNNNNNTTGG 2 cut(s) 91, 123
AluBI AGCT 1 cut(s) 532
AluI AGCT 1 cut(s) 532
Alw21I GWGCWC 1 cut(s) 276
Alw26I GTCTC 1 cut(s) 62
AlwI GGATC 3 cut(s) 140, 153, 290
AoxI GGCC 1 cut(s) 580
ApeKI GCWGC 3 cut(s) 126, 435, 438
ApoI RAATTY 1 cut(s) 387
AspLEI GCGC 1 cut(s) 347
AsuHPI GGTGA 1 cut(s) 145
AsuNHI GCTAGC 1 cut(s) 376
BamHI GGATCC 1 cut(s) 145
BbsI GAAGAC 1 cut(s) 595
Bbv12I GWGCWC 1 cut(s) 276
BbvI GCAGC 3 cut(s) 113, 422, 450
BccI CCATC 2 cut(s) 116, 550
BceAI ACGGC 1 cut(s) 567
BciT130I CCWGG 1 cut(s) 284
BcoDI GTCTC 1 cut(s) 62
BcuI ACTAGT 1 cut(s) 53
BfaI CTAG 4 cut(s) 54, 239, 377, 464
BfmI CTRYAG 2 cut(s) 436, 638
BfoI RGCGCY 1 cut(s) 348
BisI GCNGC 3 cut(s) 127, 436, 439
BlsI GCNGC 3 cut(s) 128, 437, 440
Bme1390I CCNGG 1 cut(s) 284
BmgBI CACGTC 1 cut(s) 290
BmiI GGNNCC 2 cut(s) 147, 198
BmrFI CCNGG 1 cut(s) 284
BmtI GCTAGC 1 cut(s) 380
BpiI GAAGAC 1 cut(s) 595
BpuEI CTTGAG 1 cut(s) 280
BsaJI CCNNGG 2 cut(s) 282, 283
BsaXI ACNNNNNCTCC 4 cut(s) 332, 351, 362, 381
Bsc4I CCNNNNNNNGG 2 cut(s) 578, 589
Bse1I ACTGG 1 cut(s) 583
Bse3DI GCAATG 1 cut(s) 602
BseBI CCWGG 1 cut(s) 284
BseDI CCNNGG 2 cut(s) 282, 283
BseGI GGATG 4 cut(s) 20, 127, 270, 331
BseLI CCNNNNNNNGG 2 cut(s) 578, 589
BseMI GCAATG 1 cut(s) 602
BseNI ACTGG 1 cut(s) 583
BseRI GAGGAG 1 cut(s) 372
BseXI GCAGC 3 cut(s) 113, 422, 450
BshFI GGCC 1 cut(s) 582
BsiHKAI GWGCWC 1 cut(s) 276
BslFI GGGAC 1 cut(s) 300
BslI CCNNNNNNNGG 2 cut(s) 578, 589
BsmAI GTCTC 1 cut(s) 62
BsmFI GGGAC 1 cut(s) 300
BsnI GGCC 1 cut(s) 582
Bsp1286I GDGCHC 1 cut(s) 276
Bsp143I GATC 3 cut(s) 36, 145, 295
BspACI CCGC 1 cut(s) 162
BspANI GGCC 1 cut(s) 582
BspLI GGNNCC 2 cut(s) 147, 198
BspMAI CTGCAG 2 cut(s) 440, 642
BspOI GCTAGC 1 cut(s) 380
BspPI GGATC 3 cut(s) 140, 153, 290
BsrDI GCAATG 1 cut(s) 602
BsrI ACTGG 1 cut(s) 583
BssECI CCNNGG 2 cut(s) 282, 283
BssMI GATC 3 cut(s) 36, 145, 295
Bst2UI CCWGG 1 cut(s) 284
Bst4CI ACNGT 1 cut(s) 629
BstC8I GCNNGC 3 cut(s) 378, 530, 638
BstDEI CTNAG 1 cut(s) 177
BstEII GGTNACC 1 cut(s) 164
BstF5I GGATG 4 cut(s) 20, 127, 270, 331
BstH2I RGCGCY 1 cut(s) 348
BstHHI GCGC 1 cut(s) 347
BstKTI GATC 3 cut(s) 39, 148, 298
BstMAI GTCTC 1 cut(s) 62
BstMBI GATC 3 cut(s) 36, 145, 295
BstMWI GCNNNNNNNGC 1 cut(s) 460
BstNI CCWGG 1 cut(s) 284
BstNSI RCATGY 1 cut(s) 435
BstPI GGTNACC 1 cut(s) 164
BstSCI CCNGG 1 cut(s) 282
BstSFI CTRYAG 2 cut(s) 436, 638
BstV1I GCAGC 3 cut(s) 113, 422, 450
BstV2I GAAGAC 1 cut(s) 595
BstX2I RGATCY 1 cut(s) 145
BstYI RGATCY 1 cut(s) 145
BsuRI GGCC 1 cut(s) 582
BtrI CACGTC 1 cut(s) 290
BtsCI GGATG 4 cut(s) 20, 127, 270, 331
BtsI GCAGTG 1 cut(s) 370
BtsIMutI CAGTG 1 cut(s) 370
Cac8I GCNNGC 3 cut(s) 378, 530, 638
CfoI GCGC 1 cut(s) 347
CseI GACGC 1 cut(s) 264
Csp6I GTAC 1 cut(s) 51
CspCI CAANNNNNGTGG 2 cut(s) 517, 552
CviAII CATG 3 cut(s) 65, 206, 432
CviJI RGCY 6 cut(s) 81, 126, 376, 532, 582, 636
CviKI_1 RGCY 6 cut(s) 81, 126, 376, 532, 582, 636
CviQI GTAC 1 cut(s) 51
DdeI CTNAG 1 cut(s) 177
DpnI GATC 3 cut(s) 38, 147, 297
DpnII GATC 3 cut(s) 36, 145, 295
EaeI YGGCCR 1 cut(s) 580
Eco32I GATATC 1 cut(s) 490
Eco91I GGTNACC 1 cut(s) 164
EcoO65I GGTNACC 1 cut(s) 164
EcoRII CCWGG 1 cut(s) 282
EcoRV GATATC 1 cut(s) 490
FaeI CATG 3 cut(s) 68, 209, 435
FaqI GGGAC 1 cut(s) 300
FatI CATG 3 cut(s) 64, 205, 431
Fnu4HI GCNGC 3 cut(s) 127, 436, 439
FokI GGATG 4 cut(s) 27, 134, 277, 338
Fsp4HI GCNGC 3 cut(s) 127, 436, 439
FspBI CTAG 4 cut(s) 54, 239, 377, 464
GlaI GCGC 1 cut(s) 346
GluI GCNGC 3 cut(s) 127, 436, 439
HaeII RGCGCY 1 cut(s) 348
HaeIII GGCC 1 cut(s) 582
HgaI GACGC 1 cut(s) 264
HhaI GCGC 1 cut(s) 347
Hin1II CATG 3 cut(s) 68, 209, 435
Hin6I GCGC 1 cut(s) 345
HinP1I GCGC 1 cut(s) 345
HindIII AAGCTT 1 cut(s) 530
HinfI GANTC 2 cut(s) 44, 568
HphI GGTGA 1 cut(s) 145
Hpy188I TCNGA 3 cut(s) 191, 356, 501
Hpy188III TCNNGA 1 cut(s) 200
Hpy99I CGWCG 1 cut(s) 356
HpyAV CCTTC 1 cut(s) 160
HpyCH4III ACNGT 1 cut(s) 629
HpyCH4IV ACGT 1 cut(s) 289
HpyCH4V TGCA 4 cut(s) 402, 438, 528, 640
HpyF10VI GCNNNNNNNGC 1 cut(s) 460
HpyF3I CTNAG 1 cut(s) 177
HpySE526I ACGT 1 cut(s) 289
Hsp92II CATG 3 cut(s) 68, 209, 435
HspAI GCGC 1 cut(s) 345
Kzo9I GATC 3 cut(s) 36, 145, 295
LpnPI CCDG 8 cut(s) 61, 96, 204, 213, 269, 289, 296, 564
Lsp1109I GCAGC 3 cut(s) 113, 422, 450
MaeI CTAG 4 cut(s) 54, 239, 377, 464
MaeII ACGT 1 cut(s) 289
MaeIII GTNAC 2 cut(s) 164, 208
MalI GATC 3 cut(s) 38, 147, 297
MboI GATC 3 cut(s) 36, 145, 295
MboII GAAGA 3 cut(s) 409, 577, 595
MflI RGATCY 1 cut(s) 145
MhlI GDGCHC 1 cut(s) 276
MluCI AATT 3 cut(s) 101, 387, 516
MmeI TCCRAC 1 cut(s) 334
MnlI CCTC 8 cut(s) 245, 255, 331, 350, 353, 358, 478, 626
MseI TTAA 2 cut(s) 230, 561
MspR9I CCNGG 1 cut(s) 284
MvaI CCWGG 1 cut(s) 284
MwoI GCNNNNNNNGC 1 cut(s) 460
NdeII GATC 3 cut(s) 36, 145, 295
NheI GCTAGC 1 cut(s) 376
NlaIII CATG 3 cut(s) 68, 209, 435
NlaIV GGNNCC 2 cut(s) 147, 198
NspI RCATGY 1 cut(s) 435
PasI CCCWGGG 1 cut(s) 283
PfeI GAWTC 2 cut(s) 44, 568
PflMI CCANNNNNTGG 1 cut(s) 578
PkrI GCNGC 3 cut(s) 128, 437, 440
Psp6I CCWGG 1 cut(s) 282
PspEI GGTNACC 1 cut(s) 164
PspGI CCWGG 1 cut(s) 282
PspN4I GGNNCC 2 cut(s) 147, 198
PstI CTGCAG 2 cut(s) 440, 642
PsuI RGATCY 1 cut(s) 145
RsaI GTAC 1 cut(s) 52
RsaNI GTAC 1 cut(s) 51
SaqAI TTAA 2 cut(s) 230, 561
SatI GCNGC 3 cut(s) 127, 436, 439
Sau3AI GATC 3 cut(s) 36, 145, 295
ScrFI CCNGG 1 cut(s) 284
SduI GDGCHC 1 cut(s) 276
SetI ASST 6 cut(s) 137, 198, 244, 292, 469, 534
SfcI CTRYAG 2 cut(s) 436, 638
SmlI CTYRAG 1 cut(s) 259
SmoI CTYRAG 1 cut(s) 259
SpeI ACTAGT 1 cut(s) 53
Sse9I AATT 3 cut(s) 101, 387, 516
SsiI CCGC 1 cut(s) 162
SspMI CTAG 4 cut(s) 54, 239, 377, 464
StyD4I CCNGG 1 cut(s) 282
TaaI ACNGT 1 cut(s) 629
TaiI ACGT 1 cut(s) 292
TaqII GACCGA 1 cut(s) 50
TasI AATT 3 cut(s) 101, 387, 516
TatI WGTACW 1 cut(s) 50
TfiI GAWTC 2 cut(s) 44, 568
Tru1I TTAA 2 cut(s) 230, 561
Tru9I TTAA 2 cut(s) 230, 561
TscAI CASTG 1 cut(s) 370
TseI GCWGC 3 cut(s) 126, 435, 438
TspGWI ACGGA 1 cut(s) 340
TspRI CASTG 1 cut(s) 370
Van91I CCANNNNNTGG 1 cut(s) 578
XapI RAATTY 1 cut(s) 387
XceI RCATGY 1 cut(s) 435
XcmI CCANNNNNNNNNTGG 1 cut(s) 306
XspI CTAG 4 cut(s) 54, 239, 377, 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.