Rh6DG514700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
Physical Location & Seq
Reverse (-)
66690380 .. 66697105
6726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG514700.1

Sequence Viewer

Length: 351 bp
ATGATGAACCTCTTCAAGGAGAAGAATAAACATAGGAGAATTCATTTACAAACTTCTGACACTAAGTACCGTTTCATTAATGAACCGCCTGAGGGTTTTAATAGTCCAGCAGCAGGCTCGCTAGGAGTAAGCGGAGGGCGTCTGCGGTTCAGCAGGGAAGGAGACCTTCTCCCTCAAGATCACGACGAGTTTCTGCAGCCATTTAGAGTTGGGGAGTTGAAACAAGTTGTGAAGGGCAGCGAAGGCAAACTCAAATGGTTAGCCGACAGTGTTCCTCTAGCTTGTAAAAATATTGATGTCAGCCCACCGTACACATTTAAGATGCTAGCTTTCCACCCAAACAATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

116

Amino Acids

13.18

Weight (kDa)

9.37

Isoelectric Point (pI)

62.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 86, 132, 145
AcsI RAATTY 1 cut(s) 39
AcyI GRCGYC 1 cut(s) 139
AfaI GTAC 2 cut(s) 68, 311
AfiI CCNNNNNNNGG 3 cut(s) 16, 92, 113
AgsI TTSAA 2 cut(s) 16, 220
AluBI AGCT 2 cut(s) 281, 329
AluI AGCT 2 cut(s) 281, 329
Alw26I GTCTC 1 cut(s) 156
ApeKI GCWGC 3 cut(s) 110, 196, 237
ApoI RAATTY 1 cut(s) 39
AseI ATTAAT 1 cut(s) 78
Asp700I GAANNNNTTC 1 cut(s) 11
AsuNHI GCTAGC 1 cut(s) 325
AxyI CCTNAGG 1 cut(s) 90
BbvI GCAGC 3 cut(s) 122, 208, 249
BcgI CGANNNNNNTGC 2 cut(s) 99, 133
BcoDI GTCTC 1 cut(s) 156
BfaI CTAG 3 cut(s) 122, 278, 326
BfmI CTRYAG 1 cut(s) 194
BisI GCNGC 3 cut(s) 111, 197, 238
BlsI GCNGC 3 cut(s) 112, 198, 239
BmsI GCATC 1 cut(s) 312
BmtI GCTAGC 1 cut(s) 329
BplI GAGNNNNNCTC 2 cut(s) 153, 185
BpuEI CTTGAG 1 cut(s) 159
BsaHI GRCGYC 1 cut(s) 139
BsaI GGTCTC 1 cut(s) 156
Bsc4I CCNNNNNNNGG 3 cut(s) 16, 92, 113
Bse21I CCTNAGG 1 cut(s) 90
BseLI CCNNNNNNNGG 3 cut(s) 16, 92, 113
BseMII CTCAG 1 cut(s) 81
BseXI GCAGC 3 cut(s) 122, 208, 249
BslI CCNNNNNNNGG 3 cut(s) 16, 92, 113
BsmAI GTCTC 1 cut(s) 156
Bso31I GGTCTC 1 cut(s) 156
Bsp143I GATC 1 cut(s) 178
BspACI CCGC 3 cut(s) 86, 132, 145
BspCNI CTCAG 1 cut(s) 82
BspMAI CTGCAG 1 cut(s) 198
BspOI GCTAGC 1 cut(s) 329
BspTNI GGTCTC 1 cut(s) 156
BssMI GATC 1 cut(s) 178
BssNI GRCGYC 1 cut(s) 139
Bst4CI ACNGT 3 cut(s) 71, 269, 309
Bst6I CTCTTC 1 cut(s) 17
BstACI GRCGYC 1 cut(s) 139
BstC8I GCNNGC 3 cut(s) 115, 119, 327
BstDEI CTNAG 2 cut(s) 63, 90
BstENI CCTNNNNNAGG 1 cut(s) 14
BstKTI GATC 1 cut(s) 181
BstMAI GTCTC 1 cut(s) 156
BstMBI GATC 1 cut(s) 178
BstMWI GCNNNNNNNGC 1 cut(s) 243
BstSFI CTRYAG 1 cut(s) 194
BstV1I GCAGC 3 cut(s) 122, 208, 249
Bsu36I CCTNAGG 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 274
Cac8I GCNNGC 3 cut(s) 115, 119, 327
CseI GACGC 1 cut(s) 128
Csp6I GTAC 2 cut(s) 67, 310
CviJI RGCY 6 cut(s) 117, 199, 263, 281, 303, 329
CviKI_1 RGCY 6 cut(s) 117, 199, 263, 281, 303, 329
CviQI GTAC 2 cut(s) 67, 310
DdeI CTNAG 2 cut(s) 63, 90
DpnI GATC 1 cut(s) 180
DpnII GATC 1 cut(s) 178
Eam1104I CTCTTC 1 cut(s) 17
EarI CTCTTC 1 cut(s) 17
Eco31I GGTCTC 1 cut(s) 156
Eco81I CCTNAGG 1 cut(s) 90
EcoNI CCTNNNNNAGG 1 cut(s) 14
EcoRI GAATTC 1 cut(s) 39
FaiI YATR 3 cut(s) 33, 347, 349
FalI AAGNNNNNCTT 2 cut(s) 150, 182
Fnu4HI GCNGC 3 cut(s) 111, 197, 238
Fsp4HI GCNGC 3 cut(s) 111, 197, 238
FspBI CTAG 3 cut(s) 122, 278, 326
GluI GCNGC 3 cut(s) 111, 197, 238
HgaI GACGC 1 cut(s) 128
Hin1I GRCGYC 1 cut(s) 139
Hpy166II GTNNAC 1 cut(s) 312
Hpy188I TCNGA 1 cut(s) 58
Hpy188III TCNNGA 2 cut(s) 176, 182
Hpy8I GTNNAC 1 cut(s) 312
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 4 cut(s) 152, 176, 226, 236
HpyCH4III ACNGT 3 cut(s) 71, 269, 309
HpyCH4V TGCA 1 cut(s) 196
HpyF10VI GCNNNNNNNGC 1 cut(s) 243
HpyF3I CTNAG 2 cut(s) 63, 90
Hsp92I GRCGYC 1 cut(s) 139
Kzo9I GATC 1 cut(s) 178
LpnPI CCDG 4 cut(s) 99, 102, 120, 139
Lsp1109I GCAGC 3 cut(s) 122, 208, 249
LweI GCATC 1 cut(s) 312
MaeI CTAG 3 cut(s) 122, 278, 326
MalI GATC 1 cut(s) 180
MboI GATC 1 cut(s) 178
MboII GAAGA 2 cut(s) 4, 34
MluCI AATT 1 cut(s) 39
MnlI CCTC 5 cut(s) 20, 85, 128, 183, 285
MroXI GAANNNNTTC 1 cut(s) 11
MseI TTAA 3 cut(s) 78, 99, 318
MwoI GCNNNNNNNGC 1 cut(s) 243
NdeII GATC 1 cut(s) 178
NheI GCTAGC 1 cut(s) 325
PdmI GAANNNNTTC 1 cut(s) 11
PkrI GCNGC 3 cut(s) 112, 198, 239
PshBI ATTAAT 1 cut(s) 78
PstI CTGCAG 1 cut(s) 198
RsaI GTAC 2 cut(s) 68, 311
RsaNI GTAC 2 cut(s) 67, 310
SaqAI TTAA 3 cut(s) 78, 99, 318
SatI GCNGC 3 cut(s) 111, 197, 238
Sau3AI GATC 1 cut(s) 178
SetI ASST 4 cut(s) 12, 168, 283, 331
SfaNI GCATC 1 cut(s) 312
SfcI CTRYAG 1 cut(s) 194
SmlI CTYRAG 1 cut(s) 174
SmoI CTYRAG 1 cut(s) 174
Sse9I AATT 1 cut(s) 39
SsiI CCGC 3 cut(s) 86, 132, 145
SspI AATATT 1 cut(s) 292
SspMI CTAG 3 cut(s) 122, 278, 326
TaaI ACNGT 3 cut(s) 71, 269, 309
TasI AATT 1 cut(s) 39
Tru1I TTAA 3 cut(s) 78, 99, 318
Tru9I TTAA 3 cut(s) 78, 99, 318
TscAI CASTG 1 cut(s) 274
TseI GCWGC 3 cut(s) 110, 196, 237
TspDTI ATGAA 4 cut(s) 20, 32, 64, 96
TspRI CASTG 1 cut(s) 274
VspI ATTAAT 1 cut(s) 78
XagI CCTNNNNNAGG 1 cut(s) 14
XapI RAATTY 1 cut(s) 39
XmnI GAANNNNTTC 1 cut(s) 11
XspI CTAG 3 cut(s) 122, 278, 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.