Rh6AG512500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000270
Physical Location & Seq
Reverse (-)
68270121 .. 68270636
516 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG512500.1

Sequence Viewer

Length: 516 bp
ATGTTGTACTACTGGTGGAGCAGTAATAGCCTTATACTTGAGTTGGATATGCCCAAATTCAAATTCAATACTAGTATTGCTAAGTACCGTTTCATTGAACCGCCTGAGGGTTTTAATAGTGCAGCAGCAGGCTCGCTAGGAGTAAGCGGAGGGCGTCTGCGGTTGAGCAGGGAAGGAGACGTTCTCCCTCAAGATCACGACGAGTTTCTGCTGCCATTTAGAGTTACGGAGTTGAAACAAGTTGTGAAGGGCAGCGAATGCAAACTCAAATGGTTAGCCGACAGTGTTCCTCTACCTTGTAAAAATATTGATGTCAGCCCACCGTACACATTTAAGATGCTAGCTTTCCACCCAAACAATGAGGATGTCGTGTATTTGACTCATTACCATAAAATTATCACATGCAACCTTCGTGGAGGAACGTTAGAGAAAACTTCAGTGTCCAGTAAAGGGAATGTCGAGGAGGGAACACTGCTGCCCGTTTTCTCTCCCATGGTGGCCTTCACCGGTTCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

171

Amino Acids

19.16

Weight (kDa)

6.9

Isoelectric Point (pI)

51.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 101, 147, 160
AclI AACGTT 1 cut(s) 422
AcsI RAATTY 2 cut(s) 56, 62
AcuI CTGAAG 1 cut(s) 420
AcyI GRCGYC 1 cut(s) 154
AfaI GTAC 3 cut(s) 8, 86, 326
AfiI CCNNNNNNNGG 2 cut(s) 107, 450
AgeI ACCGGT 1 cut(s) 506
AgsI TTSAA 4 cut(s) 61, 67, 98, 235
AhlI ACTAGT 1 cut(s) 71
AjuI GAANNNNNNNTTGG 2 cut(s) 47, 79
AluBI AGCT 1 cut(s) 344
AluI AGCT 1 cut(s) 344
Alw26I GTCTC 1 cut(s) 171
AoxI GGCC 1 cut(s) 498
ApeKI GCWGC 5 cut(s) 122, 125, 211, 252, 475
ApoI RAATTY 2 cut(s) 56, 62
AsiGI ACCGGT 1 cut(s) 506
AsuHPI GGTGA 1 cut(s) 496
AsuNHI GCTAGC 1 cut(s) 340
AxyI CCTNAGG 1 cut(s) 105
BbvI GCAGC 5 cut(s) 134, 137, 198, 264, 462
BcgI CGANNNNNNTGC 2 cut(s) 114, 148
BcoDI GTCTC 1 cut(s) 171
BcuI ACTAGT 1 cut(s) 71
BfaI CTAG 3 cut(s) 72, 137, 341
BisI GCNGC 5 cut(s) 123, 126, 212, 253, 476
BlsI GCNGC 5 cut(s) 124, 127, 213, 254, 477
BmiI GGNNCC 1 cut(s) 511
BmsI GCATC 1 cut(s) 327
BmtI GCTAGC 1 cut(s) 344
BplI GAGNNNNNCTC 2 cut(s) 168, 200
BpuEI CTTGAG 2 cut(s) 59, 174
BsaHI GRCGYC 1 cut(s) 154
BsaJI CCNNGG 1 cut(s) 492
BsaWI WCCGGW 1 cut(s) 506
Bsc4I CCNNNNNNNGG 2 cut(s) 107, 450
Bse118I RCCGGY 1 cut(s) 506
Bse1I ACTGG 2 cut(s) 17, 444
Bse21I CCTNAGG 1 cut(s) 105
BseDI CCNNGG 1 cut(s) 492
BseGI GGATG 1 cut(s) 370
BseLI CCNNNNNNNGG 2 cut(s) 107, 450
BseMII CTCAG 1 cut(s) 96
BseNI ACTGG 2 cut(s) 17, 444
BseRI GAGGAG 1 cut(s) 476
BseXI GCAGC 5 cut(s) 134, 137, 198, 264, 462
BsgI GTGCAG 1 cut(s) 141
BshFI GGCC 1 cut(s) 500
BshTI ACCGGT 1 cut(s) 506
BsiSI CCGG 1 cut(s) 507
BslI CCNNNNNNNGG 2 cut(s) 107, 450
BsmAI GTCTC 1 cut(s) 171
BsmBI CGTCTC 1 cut(s) 171
BsmI GAATGC 1 cut(s) 263
BsnI GGCC 1 cut(s) 500
Bsp143I GATC 1 cut(s) 193
Bsp19I CCATGG 1 cut(s) 492
BspACI CCGC 3 cut(s) 101, 147, 160
BspANI GGCC 1 cut(s) 500
BspCNI CTCAG 1 cut(s) 97
BspLI GGNNCC 1 cut(s) 511
BspOI GCTAGC 1 cut(s) 344
BsrFI RCCGGY 1 cut(s) 506
BsrI ACTGG 2 cut(s) 17, 444
BssAI RCCGGY 1 cut(s) 506
BssECI CCNNGG 1 cut(s) 492
BssMI GATC 1 cut(s) 193
BssNI GRCGYC 1 cut(s) 154
BssT1I CCWWGG 1 cut(s) 492
Bst4CI ACNGT 3 cut(s) 89, 284, 324
BstACI GRCGYC 1 cut(s) 154
BstAPI GCANNNNNTGC 1 cut(s) 258
BstC8I GCNNGC 3 cut(s) 130, 134, 342
BstDEI CTNAG 2 cut(s) 81, 105
BstDSI CCRYGG 1 cut(s) 492
BstF5I GGATG 1 cut(s) 370
BstKTI GATC 1 cut(s) 196
BstMAI GTCTC 1 cut(s) 171
BstMBI GATC 1 cut(s) 193
BstMWI GCNNNNNNNGC 2 cut(s) 27, 258
BstNSI RCATGY 1 cut(s) 405
BstV1I GCAGC 5 cut(s) 134, 137, 198, 264, 462
Bsu36I CCTNAGG 1 cut(s) 105
BsuRI GGCC 1 cut(s) 500
BtgI CCRYGG 1 cut(s) 492
BtsCI GGATG 1 cut(s) 370
BtsI GCAGTG 1 cut(s) 470
BtsIMutI CAGTG 3 cut(s) 289, 444, 470
Cac8I GCNNGC 3 cut(s) 130, 134, 342
Cfr10I RCCGGY 1 cut(s) 506
CseI GACGC 1 cut(s) 143
Csp6I GTAC 3 cut(s) 7, 85, 325
CspAI ACCGGT 1 cut(s) 506
CspCI CAANNNNNGTGG 2 cut(s) 394, 429
CviAII CATG 2 cut(s) 402, 493
CviJI RGCY 6 cut(s) 30, 132, 278, 318, 344, 500
CviKI_1 RGCY 6 cut(s) 30, 132, 278, 318, 344, 500
CviQI GTAC 3 cut(s) 7, 85, 325
DdeI CTNAG 2 cut(s) 81, 105
DpnI GATC 1 cut(s) 195
DpnII GATC 1 cut(s) 193
Eco130I CCWWGG 1 cut(s) 492
Eco57I CTGAAG 1 cut(s) 420
Eco81I CCTNAGG 1 cut(s) 105
EcoT14I CCWWGG 1 cut(s) 492
ErhI CCWWGG 1 cut(s) 492
Esp3I CGTCTC 1 cut(s) 171
FaeI CATG 2 cut(s) 405, 496
FaiI YATR 5 cut(s) 35, 50, 390, 403, 494
FatI CATG 2 cut(s) 401, 492
Fnu4HI GCNGC 5 cut(s) 123, 126, 212, 253, 476
FokI GGATG 1 cut(s) 377
Fsp4HI GCNGC 5 cut(s) 123, 126, 212, 253, 476
FspBI CTAG 3 cut(s) 72, 137, 341
GluI GCNGC 5 cut(s) 123, 126, 212, 253, 476
HaeIII GGCC 1 cut(s) 500
HapII CCGG 1 cut(s) 507
HgaI GACGC 1 cut(s) 143
Hin1I GRCGYC 1 cut(s) 154
Hin1II CATG 2 cut(s) 405, 496
HinfI GANTC 1 cut(s) 379
HpaII CCGG 1 cut(s) 507
HphI GGTGA 1 cut(s) 496
Hpy166II GTNNAC 1 cut(s) 327
Hpy188III TCNNGA 2 cut(s) 191, 197
Hpy8I GTNNAC 1 cut(s) 327
Hpy99I CGWCG 1 cut(s) 203
HpyAV CCTTC 4 cut(s) 167, 241, 419, 511
HpyCH4III ACNGT 3 cut(s) 89, 284, 324
HpyCH4IV ACGT 2 cut(s) 180, 422
HpyCH4V TGCA 3 cut(s) 122, 261, 405
HpyF10VI GCNNNNNNNGC 2 cut(s) 27, 258
HpyF3I CTNAG 2 cut(s) 81, 105
HpySE526I ACGT 2 cut(s) 180, 422
Hsp92I GRCGYC 1 cut(s) 154
Hsp92II CATG 2 cut(s) 405, 496
Kzo9I GATC 1 cut(s) 193
LmnI GCTCC 1 cut(s) 18
LpnPI CCDG 4 cut(s) 114, 117, 154, 457
Lsp1109I GCAGC 5 cut(s) 134, 137, 198, 264, 462
LweI GCATC 1 cut(s) 327
MaeI CTAG 3 cut(s) 72, 137, 341
MaeII ACGT 2 cut(s) 180, 422
MaeIII GTNAC 1 cut(s) 223
MalI GATC 1 cut(s) 195
MboI GATC 1 cut(s) 193
MluCI AATT 3 cut(s) 56, 62, 393
MlyI GAGTC 1 cut(s) 373
MmeI TCCRAC 1 cut(s) 24
MnlI CCTC 8 cut(s) 100, 143, 198, 300, 355, 410, 454, 457
MseI TTAA 2 cut(s) 114, 333
MspI CCGG 1 cut(s) 507
Mva1269I GAATGC 1 cut(s) 263
MwoI GCNNNNNNNGC 2 cut(s) 27, 258
NcoI CCATGG 1 cut(s) 492
NdeII GATC 1 cut(s) 193
NheI GCTAGC 1 cut(s) 340
NlaIII CATG 2 cut(s) 405, 496
NlaIV GGNNCC 1 cut(s) 511
NspI RCATGY 1 cut(s) 405
PctI GAATGC 1 cut(s) 263
PinAI ACCGGT 1 cut(s) 506
PkrI GCNGC 5 cut(s) 124, 127, 213, 254, 477
PleI GAGTC 1 cut(s) 373
PpsI GAGTC 1 cut(s) 373
Psp1406I AACGTT 1 cut(s) 422
PspN4I GGNNCC 1 cut(s) 511
RsaI GTAC 3 cut(s) 8, 86, 326
RsaNI GTAC 3 cut(s) 7, 85, 325
SaqAI TTAA 2 cut(s) 114, 333
SatI GCNGC 5 cut(s) 123, 126, 212, 253, 476
Sau3AI GATC 1 cut(s) 193
SchI GAGTC 1 cut(s) 373
SetI ASST 5 cut(s) 183, 298, 346, 411, 425
SfaNI GCATC 1 cut(s) 327
SmlI CTYRAG 2 cut(s) 38, 189
SmoI CTYRAG 2 cut(s) 38, 189
SpeI ACTAGT 1 cut(s) 71
Sse9I AATT 3 cut(s) 56, 62, 393
SsiI CCGC 3 cut(s) 101, 147, 160
SspI AATATT 1 cut(s) 307
SspMI CTAG 3 cut(s) 72, 137, 341
StyI CCWWGG 1 cut(s) 492
TaaI ACNGT 3 cut(s) 89, 284, 324
TaiI ACGT 2 cut(s) 183, 425
TaqI TCGA 1 cut(s) 459
TasI AATT 3 cut(s) 56, 62, 393
TatI WGTACW 1 cut(s) 6
Tru1I TTAA 2 cut(s) 114, 333
Tru9I TTAA 2 cut(s) 114, 333
TscAI CASTG 3 cut(s) 289, 444, 477
TseI GCWGC 5 cut(s) 122, 125, 211, 252, 475
TspDTI ATGAA 1 cut(s) 82
TspGWI ACGGA 1 cut(s) 242
TspRI CASTG 3 cut(s) 289, 444, 477
XapI RAATTY 2 cut(s) 56, 62
XceI RCATGY 1 cut(s) 405
XspI CTAG 3 cut(s) 72, 137, 341
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.