RLG00000025820

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000270
Physical Location & Seq
Forward (+)
48506772 .. 48507865
1094 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025820

Sequence Viewer

Length: 858 bp
ATGTTGTCAAAACGACACCATTTGGTATCATGGAAGGAATCACACCTTTTTTCTTTCCTGCCTGGTTTGCAAGGTCATGATGATCACAAAGCTTTTGTGCAAGGGGTTTGTAATGACCTAACCCTGTGGTGCTATCGACACGATTACTACGTCTGCAATCACTACAGCAAGTGGGTTCGTCTTCCTCCCACAATCTGGACAGGCGGACCGGTGGAGGGTTGTGAGAATCCTTCCAAATCCAATATTACTACATCGAGATCTTCTCTTCCGAGACGGGTCAATGGAGAGTGTACACGTCGGCTAATGTGTTATGCCCACAACAAGACTTCAGCTCATTCCAAGCTAGAAGTTCGGGTGTTGCTTACAATGGAAAGTTGTATTGGTGGATTCCTGACGGCTTTACTGTTGAGCTGGATCCCTTTAGTGTTGGCTCCATTCACTGTTTGGGAGTTGAAAGAAAACAAAGTAAATGGAACTTTGGAATGGTGTTTGGTATCGGACCAAATTTTTCTTCACCAGATGGTTCCCAAAAGTCGTTTAATCAGTATACGCAGAGAGCGCAATGAAGTGTTTACTGTGATAGGTTTCCATCCAGATGATGAGGATATCTTGTACCTAACAATCATTGACTATGTAGTGATGTGCAATGTTCGTGACAAGACCTTAGATATTGCTGCAGAGATTACATCTCGAGAACTAATTTGGGGCATGGCAGGCGCCTTCCCGCTGTTCCAACCAGTGGCCGACACCAGTTTCCACACTATATTACTACTCGGAATGTACACCACAGCTCAAGTGTCGCCTTTTGTGGAAGCTGTGAATGATCTTGGGAAGTTATGCAATGGAAGAGGTACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

286

Amino Acids

32.46

Weight (kDa)

7.17

Isoelectric Point (pI)

43.32

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 716
AccB7I CCANNNNNTGG 2 cut(s) 195, 739
AccI GTMKAC 1 cut(s) 547
AciI CCGC 2 cut(s) 204, 725
AclWI GGATC 2 cut(s) 409, 422
AcoI YGGCCR 1 cut(s) 741
AcsI RAATTY 1 cut(s) 504
AcuI CTGAAG 1 cut(s) 312
AcyI GRCGYC 1 cut(s) 717
AfaI GTAC 4 cut(s) 292, 614, 782, 853
AfiI CCNNNNNNNGG 3 cut(s) 195, 215, 739
AflIII ACRYGT 1 cut(s) 293
AgeI ACCGGT 1 cut(s) 208
AgsI TTSAA 1 cut(s) 454
AjiI CACGTC 1 cut(s) 296
AjnI CCWGG 1 cut(s) 61
AjuI GAANNNNNNNTTGG 4 cut(s) 363, 395, 495, 527
AluBI AGCT 6 cut(s) 92, 332, 343, 411, 791, 815
AluI AGCT 6 cut(s) 92, 332, 343, 411, 791, 815
Alw26I GTCTC 1 cut(s) 265
AlwI GGATC 2 cut(s) 409, 422
Ama87I CYCGRG 1 cut(s) 690
AoxI GGCC 1 cut(s) 741
ApeKI GCWGC 1 cut(s) 674
ApoI RAATTY 1 cut(s) 504
AsiGI ACCGGT 1 cut(s) 208
AspLEI GCGC 2 cut(s) 561, 719
AspS9I GGNCC 2 cut(s) 206, 499
AsuHPI GGTGA 1 cut(s) 506
AvaI CYCGRG 1 cut(s) 690
AvaII GGWCC 2 cut(s) 206, 499
BamHI GGATCC 1 cut(s) 414
BanI GGYRCC 1 cut(s) 716
BbsI GAAGAC 1 cut(s) 173
BbvI GCAGC 1 cut(s) 661
BccI CCATC 2 cut(s) 514, 597
BceAI ACGGC 1 cut(s) 411
BciT130I CCWGG 1 cut(s) 63
BclI TGATCA 1 cut(s) 82
BcoDI GTCTC 1 cut(s) 265
BfaI CTAG 1 cut(s) 344
BfmI CTRYAG 2 cut(s) 163, 675
BfoI RGCGCY 1 cut(s) 720
BglII AGATCT 1 cut(s) 257
BisI GCNGC 1 cut(s) 675
BlsI GCNGC 1 cut(s) 676
Bme1390I CCNGG 1 cut(s) 63
Bme18I GGWCC 2 cut(s) 206, 499
BmeT110I CYCGRG 1 cut(s) 690
BmgBI CACGTC 1 cut(s) 296
BmgT120I GGNCC 2 cut(s) 206, 499
BmiI GGNNCC 4 cut(s) 416, 432, 525, 718
BmrFI CCNGG 1 cut(s) 63
BpiI GAAGAC 1 cut(s) 173
BplI GAGNNNNNCTC 2 cut(s) 247, 279
BpuEI CTTGAG 1 cut(s) 777
BsaHI GRCGYC 1 cut(s) 717
BsaWI WCCGGW 1 cut(s) 208
Bsc4I CCNNNNNNNGG 3 cut(s) 195, 215, 739
Bse118I RCCGGY 1 cut(s) 208
Bse1I ACTGG 2 cut(s) 737, 750
Bse3DI GCAATG 3 cut(s) 568, 652, 847
BseBI CCWGG 1 cut(s) 63
BseGI GGATG 1 cut(s) 589
BseLI CCNNNNNNNGG 3 cut(s) 195, 215, 739
BseMI GCAATG 3 cut(s) 568, 652, 847
BseNI ACTGG 2 cut(s) 737, 750
BseXI GCAGC 1 cut(s) 661
BshFI GGCC 1 cut(s) 743
BshNI GGYRCC 1 cut(s) 716
BshTI ACCGGT 1 cut(s) 208
BsiHKCI CYCGRG 1 cut(s) 690
BsiSI CCGG 1 cut(s) 209
BslI CCNNNNNNNGG 3 cut(s) 195, 215, 739
BsmAI GTCTC 1 cut(s) 265
BsmBI CGTCTC 1 cut(s) 265
BsnI GGCC 1 cut(s) 743
BsoBI CYCGRG 1 cut(s) 690
Bsp1407I TGTACA 2 cut(s) 290, 780
Bsp143I GATC 4 cut(s) 82, 257, 414, 823
BspACI CCGC 2 cut(s) 204, 725
BspANI GGCC 1 cut(s) 743
BspHI TCATGA 1 cut(s) 76
BspLI GGNNCC 4 cut(s) 416, 432, 525, 718
BspMAI CTGCAG 1 cut(s) 679
BspPI GGATC 2 cut(s) 409, 422
BspT107I GGYRCC 1 cut(s) 716
BsrDI GCAATG 3 cut(s) 568, 652, 847
BsrFI RCCGGY 1 cut(s) 208
BsrGI TGTACA 2 cut(s) 290, 780
BsrI ACTGG 2 cut(s) 737, 750
BssAI RCCGGY 1 cut(s) 208
BssMI GATC 4 cut(s) 82, 257, 414, 823
BssNAI GTATAC 1 cut(s) 548
BssNI GRCGYC 1 cut(s) 717
Bst1107I GTATAC 1 cut(s) 548
Bst2UI CCWGG 1 cut(s) 63
Bst4CI ACNGT 3 cut(s) 405, 442, 577
Bst6I CTCTTC 2 cut(s) 270, 841
BstACI GRCGYC 1 cut(s) 717
BstAUI TGTACA 2 cut(s) 290, 780
BstC8I GCNNGC 1 cut(s) 715
BstDEI CTNAG 1 cut(s) 664
BstF5I GGATG 1 cut(s) 589
BstH2I RGCGCY 1 cut(s) 720
BstHHI GCGC 2 cut(s) 561, 719
BstKTI GATC 4 cut(s) 85, 260, 417, 826
BstMAI GTCTC 1 cut(s) 265
BstMBI GATC 4 cut(s) 82, 257, 414, 823
BstMWI GCNNNNNNNGC 3 cut(s) 67, 558, 714
BstNI CCWGG 1 cut(s) 63
BstSCI CCNGG 1 cut(s) 61
BstSFI CTRYAG 2 cut(s) 163, 675
BstV1I GCAGC 1 cut(s) 661
BstV2I GAAGAC 1 cut(s) 173
BstX2I RGATCY 2 cut(s) 257, 414
BstYI RGATCY 2 cut(s) 257, 414
BstZ17I GTATAC 1 cut(s) 548
BsuRI GGCC 1 cut(s) 743
BtrI CACGTC 1 cut(s) 296
BtsCI GGATG 1 cut(s) 589
BtsIMutI CAGTG 2 cut(s) 438, 744
Cac8I GCNNGC 1 cut(s) 715
CciI TCATGA 1 cut(s) 76
CfoI GCGC 2 cut(s) 561, 719
Cfr10I RCCGGY 1 cut(s) 208
Cfr13I GGNCC 2 cut(s) 206, 499
CpoI CGGWCCG 1 cut(s) 206
Csp6I GTAC 4 cut(s) 291, 613, 781, 852
CspAI ACCGGT 1 cut(s) 208
CspI CGGWCCG 1 cut(s) 206
CviAII CATG 3 cut(s) 30, 77, 709
CviQI GTAC 4 cut(s) 291, 613, 781, 852
DdeI CTNAG 1 cut(s) 664
DinI GGCGCC 1 cut(s) 718
DpnI GATC 4 cut(s) 84, 259, 416, 825
DpnII GATC 4 cut(s) 82, 257, 414, 823
EaeI YGGCCR 1 cut(s) 741
Eam1104I CTCTTC 2 cut(s) 270, 841
EarI CTCTTC 2 cut(s) 270, 841
EciI GGCGGA 1 cut(s) 219
Eco32I GATATC 1 cut(s) 607
Eco47I GGWCC 2 cut(s) 206, 499
Eco57I CTGAAG 1 cut(s) 312
Eco88I CYCGRG 1 cut(s) 690
EcoRII CCWGG 1 cut(s) 61
EcoRV GATATC 1 cut(s) 607
EgeI GGCGCC 1 cut(s) 718
EheI GGCGCC 1 cut(s) 718
Esp3I CGTCTC 1 cut(s) 265
FaeI CATG 3 cut(s) 33, 80, 712
FaiI YATR 9 cut(s) 31, 78, 312, 548, 633, 710, 764, 838, 856
FatI CATG 3 cut(s) 29, 76, 708
FauI CCCGC 1 cut(s) 732
FbaI TGATCA 1 cut(s) 82
FblI GTMKAC 1 cut(s) 547
Fnu4HI GCNGC 1 cut(s) 675
FokI GGATG 1 cut(s) 576
Fsp4HI GCNGC 1 cut(s) 675
FspBI CTAG 1 cut(s) 344
GlaI GCGC 2 cut(s) 560, 718
GluI GCNGC 1 cut(s) 675
HaeII RGCGCY 1 cut(s) 720
HaeIII GGCC 1 cut(s) 743
HapII CCGG 1 cut(s) 209
HhaI GCGC 2 cut(s) 561, 719
Hin1I GRCGYC 1 cut(s) 717
Hin1II CATG 3 cut(s) 33, 80, 712
Hin6I GCGC 2 cut(s) 559, 717
HinP1I GCGC 2 cut(s) 559, 717
HindIII AAGCTT 1 cut(s) 90
HinfI GANTC 3 cut(s) 38, 226, 387
HpaII CCGG 1 cut(s) 209
HphI GGTGA 1 cut(s) 506
Hpy166II GTNNAC 5 cut(s) 291, 293, 548, 573, 783
Hpy188I TCNGA 3 cut(s) 270, 499, 776
Hpy188III TCNNGA 8 cut(s) 77, 196, 255, 391, 593, 653, 690, 692
Hpy8I GTNNAC 5 cut(s) 291, 293, 548, 573, 783
Hpy99I CGWCG 1 cut(s) 300
HpyAV CCTTC 3 cut(s) 28, 240, 730
HpyCH4III ACNGT 3 cut(s) 405, 442, 577
HpyCH4IV ACGT 2 cut(s) 150, 295
HpyCH4V TGCA 6 cut(s) 70, 100, 156, 645, 677, 840
HpyF10VI GCNNNNNNNGC 3 cut(s) 67, 558, 714
HpyF3I CTNAG 1 cut(s) 664
HpySE526I ACGT 2 cut(s) 150, 295
Hsp92I GRCGYC 1 cut(s) 717
Hsp92II CATG 3 cut(s) 33, 80, 712
HspAI GCGC 2 cut(s) 559, 717
KasI GGCGCC 1 cut(s) 716
Ksp22I TGATCA 1 cut(s) 82
Kzo9I GATC 4 cut(s) 82, 257, 414, 823
LmnI GCTCC 1 cut(s) 436
Lsp1109I GCAGC 1 cut(s) 661
MaeI CTAG 1 cut(s) 344
MaeII ACGT 2 cut(s) 150, 295
MaeIII GTNAC 1 cut(s) 653
MalI GATC 4 cut(s) 84, 259, 416, 825
MboI GATC 4 cut(s) 82, 257, 414, 823
MboII GAAGA 5 cut(s) 173, 252, 257, 503, 858
MflI RGATCY 2 cut(s) 257, 414
MluCI AATT 2 cut(s) 504, 699
Mly113I GGCGCC 1 cut(s) 717
MmeI TCCRAC 1 cut(s) 757
MnlI CCTC 4 cut(s) 195, 208, 595, 842
MseI TTAA 1 cut(s) 539
MslI CAYNNNNRTG 1 cut(s) 594
MspA1I CMGCKG 1 cut(s) 727
MspI CCGG 1 cut(s) 209
MspR9I CCNGG 1 cut(s) 63
MvaI CCWGG 1 cut(s) 63
MwoI GCNNNNNNNGC 3 cut(s) 67, 558, 714
NarI GGCGCC 1 cut(s) 717
NdeII GATC 4 cut(s) 82, 257, 414, 823
NlaIII CATG 3 cut(s) 33, 80, 712
NlaIV GGNNCC 4 cut(s) 416, 432, 525, 718
NmuCI GTSAC 1 cut(s) 653
PaeR7I CTCGAG 1 cut(s) 690
PagI TCATGA 1 cut(s) 76
PcsI WCGNNNNNNNCGW 1 cut(s) 147
PfeI GAWTC 3 cut(s) 38, 226, 387
PflMI CCANNNNNTGG 2 cut(s) 195, 739
PinAI ACCGGT 1 cut(s) 208
PkrI GCNGC 1 cut(s) 676
PluTI GGCGCC 1 cut(s) 720
Psp6I CCWGG 1 cut(s) 61
PspGI CCWGG 1 cut(s) 61
PspN4I GGNNCC 4 cut(s) 416, 432, 525, 718
PspPI GGNCC 2 cut(s) 206, 499
PstI CTGCAG 1 cut(s) 679
PsuI RGATCY 2 cut(s) 257, 414
RsaI GTAC 4 cut(s) 292, 614, 782, 853
RsaNI GTAC 4 cut(s) 291, 613, 781, 852
RseI CAYNNNNRTG 1 cut(s) 594
Rsr2I CGGWCCG 1 cut(s) 206
RsrII CGGWCCG 1 cut(s) 206
SaqAI TTAA 1 cut(s) 539
SatI GCNGC 1 cut(s) 675
Sau3AI GATC 4 cut(s) 82, 257, 414, 823
Sau96I GGNCC 2 cut(s) 206, 499
ScrFI CCNGG 1 cut(s) 63
SfcI CTRYAG 2 cut(s) 163, 675
SfoI GGCGCC 1 cut(s) 718
Sfr274I CTCGAG 1 cut(s) 690
SinI GGWCC 2 cut(s) 206, 499
SlaI CTCGAG 1 cut(s) 690
SmiMI CAYNNNNRTG 1 cut(s) 594
SmlI CTYRAG 2 cut(s) 690, 792
SmoI CTYRAG 2 cut(s) 690, 792
Sse9I AATT 2 cut(s) 504, 699
SsiI CCGC 2 cut(s) 204, 725
SspDI GGCGCC 1 cut(s) 716
SspI AATATT 1 cut(s) 244
SspMI CTAG 1 cut(s) 344
StyD4I CCNGG 1 cut(s) 61
TaaI ACNGT 3 cut(s) 405, 442, 577
TaiI ACGT 2 cut(s) 153, 298
TaqI TCGA 3 cut(s) 136, 254, 691
TasI AATT 2 cut(s) 504, 699
TatI WGTACW 2 cut(s) 290, 780
TfiI GAWTC 3 cut(s) 38, 226, 387
Tru1I TTAA 1 cut(s) 539
Tru9I TTAA 1 cut(s) 539
TscAI CASTG 2 cut(s) 445, 744
TseFI GTSAC 1 cut(s) 653
TseI GCWGC 1 cut(s) 674
Tsp45I GTSAC 1 cut(s) 653
TspDTI ATGAA 1 cut(s) 579
TspRI CASTG 2 cut(s) 445, 744
Van91I CCANNNNNTGG 2 cut(s) 195, 739
VpaK11BI GGWCC 2 cut(s) 206, 499
XapI RAATTY 1 cut(s) 504
XcmI CCANNNNNNNNNTGG 1 cut(s) 441
XhoI CTCGAG 1 cut(s) 690
XmiI GTMKAC 1 cut(s) 547
XspI CTAG 1 cut(s) 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.