FvH4_6g02071

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0000270
Physical Location & Seq
Forward (+)
1210714 .. 1211402
689 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g02071.t1

Sequence Viewer

Length: 408 bp
ATGTGCAATGTTCGTGAAAACACCTTGGAGATAGCATCAAATAATCCATTTTATGACACTGAATGGACTTACCAGACTCACAAGTCTCACCGGGAAAGTCACCCGATTTCGGTCCCGTGGTGGCCGACGCCACTTATTCAAAGAAGATTCTACTATCGTAAGGAGTGCTTCAACATCACTGTGACTGGGAAATACAACATTACGGTTGCGGTAAGTTGCTATAGCACTATAAAACAATTGAAAAAATTGCTTGGAGAGGATGAAGTATACTTCAATGAGAAACTTTTAGAGGAAGTTGATGATGACAAGCAGCTTACGCTCCTTGGGATCGGGGAGGATTCTGAGATCCACATTGTTGAAGATTGTTGCAGAAAGCCTGCCCGGAGGAAGAGGAAGAGAAGAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

16.07

Weight (kDa)

8.25

Isoelectric Point (pI)

59.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 82
AccI GTMKAC 1 cut(s) 267
AciI CCGC 1 cut(s) 209
AclWI GGATC 2 cut(s) 335, 340
AcoI YGGCCR 1 cut(s) 122
AcyI GRCGYC 1 cut(s) 128
AfiI CCNNNNNNNGG 1 cut(s) 109
AgsI TTSAA 5 cut(s) 140, 172, 241, 274, 359
AluBI AGCT 1 cut(s) 313
AluI AGCT 1 cut(s) 313
Alw26I GTCTC 1 cut(s) 90
AlwI GGATC 2 cut(s) 335, 340
AoxI GGCC 1 cut(s) 122
ApeKI GCWGC 1 cut(s) 310
AspS9I GGNCC 1 cut(s) 112
AsuC2I CCSGG 2 cut(s) 92, 382
AsuHPI GGTGA 2 cut(s) 80, 92
AvaII GGWCC 1 cut(s) 112
BbvI GCAGC 1 cut(s) 322
BcnI CCSGG 2 cut(s) 92, 382
BcoDI GTCTC 1 cut(s) 90
BfmI CTRYAG 1 cut(s) 220
BisI GCNGC 1 cut(s) 311
BlsI GCNGC 1 cut(s) 312
Bme1390I CCNGG 2 cut(s) 92, 382
Bme18I GGWCC 1 cut(s) 112
BmgT120I GGNCC 1 cut(s) 112
BmiI GGNNCC 1 cut(s) 114
BmrFI CCNGG 2 cut(s) 92, 382
BmrI ACTGGG 1 cut(s) 195
BmsI GCATC 1 cut(s) 44
BmuI ACTGGG 1 cut(s) 195
BpuMI CCSGG 2 cut(s) 92, 382
BsaHI GRCGYC 1 cut(s) 128
BsaJI CCNNGG 3 cut(s) 24, 116, 322
Bsc4I CCNNNNNNNGG 1 cut(s) 109
Bse1I ACTGG 1 cut(s) 190
Bse3DI GCAATG 1 cut(s) 13
BseDI CCNNGG 3 cut(s) 24, 116, 322
BseGI GGATG 1 cut(s) 265
BseLI CCNNNNNNNGG 1 cut(s) 109
BseMI GCAATG 1 cut(s) 13
BseMII CTCAG 1 cut(s) 333
BseNI ACTGG 1 cut(s) 190
BseXI GCAGC 1 cut(s) 322
BshFI GGCC 1 cut(s) 124
BsiSI CCGG 2 cut(s) 91, 382
BslFI GGGAC 1 cut(s) 98
BslI CCNNNNNNNGG 1 cut(s) 109
BsmAI GTCTC 1 cut(s) 90
BsmFI GGGAC 1 cut(s) 98
BsnI GGCC 1 cut(s) 124
Bsp143I GATC 2 cut(s) 327, 345
BspACI CCGC 1 cut(s) 209
BspANI GGCC 1 cut(s) 124
BspCNI CTCAG 1 cut(s) 334
BspLI GGNNCC 1 cut(s) 114
BspPI GGATC 2 cut(s) 335, 340
BsrDI GCAATG 1 cut(s) 13
BsrI ACTGG 1 cut(s) 190
BssECI CCNNGG 3 cut(s) 24, 116, 322
BssMI GATC 2 cut(s) 327, 345
BssNAI GTATAC 1 cut(s) 268
BssNI GRCGYC 1 cut(s) 128
BssT1I CCWWGG 2 cut(s) 24, 322
Bst1107I GTATAC 1 cut(s) 268
Bst4CI ACNGT 2 cut(s) 181, 205
Bst6I CTCTTC 3 cut(s) 383, 389, 394
BstACI GRCGYC 1 cut(s) 128
BstC8I GCNNGC 1 cut(s) 378
BstDEI CTNAG 1 cut(s) 342
BstDSI CCRYGG 1 cut(s) 116
BstF5I GGATG 1 cut(s) 265
BstKTI GATC 2 cut(s) 330, 348
BstMAI GTCTC 1 cut(s) 90
BstMBI GATC 2 cut(s) 327, 345
BstMWI GCNNNNNNNGC 1 cut(s) 316
BstSCI CCNGG 2 cut(s) 90, 380
BstSFI CTRYAG 1 cut(s) 220
BstV1I GCAGC 1 cut(s) 322
BstX2I RGATCY 1 cut(s) 345
BstYI RGATCY 1 cut(s) 345
BstZ17I GTATAC 1 cut(s) 268
BsuRI GGCC 1 cut(s) 124
BtgI CCRYGG 1 cut(s) 116
BtsCI GGATG 1 cut(s) 265
BtsIMutI CAGTG 2 cut(s) 57, 177
Cac8I GCNNGC 1 cut(s) 378
Cfr13I GGNCC 1 cut(s) 112
CseI GACGC 1 cut(s) 136
CviJI RGCY 3 cut(s) 124, 313, 376
CviKI_1 RGCY 3 cut(s) 124, 313, 376
DdeI CTNAG 1 cut(s) 342
DpnI GATC 2 cut(s) 329, 347
DpnII GATC 2 cut(s) 327, 345
DrdI GACNNNNNNGTC 1 cut(s) 82
DseDI GACNNNNNNGTC 1 cut(s) 82
EaeI YGGCCR 1 cut(s) 122
Eam1104I CTCTTC 3 cut(s) 383, 389, 394
EarI CTCTTC 3 cut(s) 383, 389, 394
Eco130I CCWWGG 2 cut(s) 24, 322
Eco47I GGWCC 1 cut(s) 112
EcoT14I CCWWGG 2 cut(s) 24, 322
ErhI CCWWGG 2 cut(s) 24, 322
FaiI YATR 4 cut(s) 54, 222, 230, 268
FalI AAGNNNNNCTT 2 cut(s) 152, 184
FaqI GGGAC 1 cut(s) 98
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 1 cut(s) 311
FokI GGATG 1 cut(s) 272
Fsp4HI GCNGC 1 cut(s) 311
GluI GCNGC 1 cut(s) 311
HaeIII GGCC 1 cut(s) 124
HapII CCGG 2 cut(s) 91, 382
HgaI GACGC 1 cut(s) 136
Hin1I GRCGYC 1 cut(s) 128
HinfI GANTC 3 cut(s) 76, 147, 338
HpaII CCGG 2 cut(s) 91, 382
HphI GGTGA 2 cut(s) 80, 92
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 1 cut(s) 343
Hpy188III TCNNGA 1 cut(s) 14
Hpy8I GTNNAC 1 cut(s) 268
Hpy99I CGWCG 1 cut(s) 130
HpyCH4III ACNGT 2 cut(s) 181, 205
HpyCH4V TGCA 2 cut(s) 6, 369
HpyF10VI GCNNNNNNNGC 1 cut(s) 316
HpyF3I CTNAG 1 cut(s) 342
Hsp92I GRCGYC 1 cut(s) 128
Kzo9I GATC 2 cut(s) 327, 345
LmnI GCTCC 1 cut(s) 324
LpnPI CCDG 5 cut(s) 86, 104, 171, 390, 395
Lsp1109I GCAGC 1 cut(s) 322
LweI GCATC 1 cut(s) 44
MaeIII GTNAC 2 cut(s) 98, 181
MalI GATC 2 cut(s) 329, 347
MboI GATC 2 cut(s) 327, 345
MboII GAAGA 4 cut(s) 156, 371, 400, 406
MfeI CAATTG 1 cut(s) 236
MflI RGATCY 1 cut(s) 345
MluCI AATT 2 cut(s) 236, 245
MlyI GAGTC 1 cut(s) 70
MnlI CCTC 6 cut(s) 250, 283, 328, 378, 384, 395
MslI CAYNNNNRTG 1 cut(s) 179
MspI CCGG 2 cut(s) 91, 382
MspR9I CCNGG 2 cut(s) 92, 382
MunI CAATTG 1 cut(s) 236
MwoI GCNNNNNNNGC 1 cut(s) 316
NciI CCSGG 2 cut(s) 92, 382
NdeII GATC 2 cut(s) 327, 345
NlaIV GGNNCC 1 cut(s) 114
NmuCI GTSAC 2 cut(s) 98, 181
PfeI GAWTC 2 cut(s) 147, 338
PkrI GCNGC 1 cut(s) 312
PleI GAGTC 1 cut(s) 70
PpsI GAGTC 1 cut(s) 70
PspN4I GGNNCC 1 cut(s) 114
PspPI GGNCC 1 cut(s) 112
PsuI RGATCY 1 cut(s) 345
RseI CAYNNNNRTG 1 cut(s) 179
SatI GCNGC 1 cut(s) 311
Sau3AI GATC 2 cut(s) 327, 345
Sau96I GGNCC 1 cut(s) 112
SchI GAGTC 1 cut(s) 70
ScrFI CCNGG 2 cut(s) 92, 382
SetI ASST 2 cut(s) 26, 315
SfaNI GCATC 1 cut(s) 44
SfcI CTRYAG 1 cut(s) 220
SinI GGWCC 1 cut(s) 112
SmiMI CAYNNNNRTG 1 cut(s) 179
Sse9I AATT 2 cut(s) 236, 245
SsiI CCGC 1 cut(s) 209
StyD4I CCNGG 2 cut(s) 90, 380
StyI CCWWGG 2 cut(s) 24, 322
TaaI ACNGT 2 cut(s) 181, 205
TaqII GACCGA 1 cut(s) 100
TasI AATT 2 cut(s) 236, 245
TfiI GAWTC 2 cut(s) 147, 338
TscAI CASTG 2 cut(s) 64, 184
TseFI GTSAC 2 cut(s) 98, 181
TseI GCWGC 1 cut(s) 310
Tsp45I GTSAC 2 cut(s) 98, 181
TspDTI ATGAA 1 cut(s) 276
TspRI CASTG 2 cut(s) 64, 184
VpaK11BI GGWCC 1 cut(s) 112
XmiI GTMKAC 1 cut(s) 267
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.