Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0000270

Physical Location & Seq

Genomic Coordinates Reverse (-)

5256811 .. 5258059

Gene Structure 1249 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G028100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGCAGCACCTAATGGGAACCAAGGGAGTGATAGTAGATCCTGTGGAAGAGATCACGGTGGCGGTGTCGGATATGATTAAGCCAACAACAGCTGAAGATAGGGGGGACAAGAATCTGTTGGAAGGAGACAAGAAGATGCAGATGCAGATTGCGAAAGACCCATCTGGGAAAGAGATCAATGCACTCGAACAACATATAAAGAACTTGTTAAATCCATCAACTCCTCTATTTTTCAACACTCTTAATGATCCATACAGAGAAGATGTAGACTTATTCCGTGGATATCCTTTTAGTTTCCGTGGGGGTGTACCTACAGCTGTTTCTCTTGGCCTGGGACTCAACATCCCTGACTATGATGCTCTACCCAGCTTGCCAATCCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005829 GO:0005911 GO:0006139 GO:0006725 GO:0006793 GO:0006807 GO:0008150 GO:0008152 GO:0009225 GO:0009506 GO:0009832 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016866 GO:0030054 GO:0033356 GO:0034641 GO:0042546 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044085 GO:0044237 GO:0044238 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0052691 GO:0055044 GO:0055086 GO:0071554 GO:0071669 GO:0071704 GO:0071840 GO:1901135 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

RGP

Protein Analysis

128

Amino Acids

14.0

Weight (kDa)

4.76

Isoelectric Point (pI)

30.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000270)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica	MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica	Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis	pycom05g22060
rosa_chinensis	RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata	RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora	Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii	Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa	Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha	Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana	Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	267
AciI	CCGC	1 cut(s)	62
AclWI	GGATC	2 cut(s)	32, 242
AcuI	CTGAAG	1 cut(s)	114
AfaI	GTAC	1 cut(s)	309
AgsI	TTSAA	1 cut(s)	235
AjnI	CCWGG	1 cut(s)	330
AluBI	AGCT	3 cut(s)	92, 317, 369
AluI	AGCT	3 cut(s)	92, 317, 369
Alw26I	GTCTC	1 cut(s)	120
AlwI	GGATC	2 cut(s)	32, 242
AoxI	GGCC	1 cut(s)	328
ApeKI	GCWGC	1 cut(s)	4
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	2 cut(s)	169, 223
BciT130I	CCWGG	1 cut(s)	332
BcoDI	GTCTC	1 cut(s)	120
BfaI	CTAG	1 cut(s)	382
BfmI	CTRYAG	1 cut(s)	312
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	1 cut(s)	332
BmiI	GGNNCC	1 cut(s)	19
BmrFI	CCNGG	1 cut(s)	332
BmsI	GCATC	3 cut(s)	126, 132, 346
BsaJI	CCNNGG	4 cut(s)	21, 277, 298, 331
BsaXI	ACNNNNNCTCC	2 cut(s)	18, 48
BseBI	CCWGG	1 cut(s)	332
BseDI	CCNNGG	4 cut(s)	21, 277, 298, 331
BseGI	GGATG	1 cut(s)	342
BseRI	GAGGAG	1 cut(s)	213
BseXI	GCAGC	1 cut(s)	16
BseYI	CCCAGC	1 cut(s)	365
BshFI	GGCC	1 cut(s)	330
BslFI	GGGAC	2 cut(s)	119, 348
BsmAI	GTCTC	1 cut(s)	120
BsmFI	GGGAC	2 cut(s)	119, 348
BsnI	GGCC	1 cut(s)	330
Bsp143I	GATC	4 cut(s)	37, 51, 174, 247
BspACI	CCGC	1 cut(s)	62
BspANI	GGCC	1 cut(s)	330
BspLI	GGNNCC	1 cut(s)	19
BspPI	GGATC	2 cut(s)	32, 242
BssECI	CCNNGG	4 cut(s)	21, 277, 298, 331
BssMI	GATC	4 cut(s)	37, 51, 174, 247
BssT1I	CCWWGG	1 cut(s)	21
Bst2UI	CCWGG	1 cut(s)	332
Bst4CI	ACNGT	1 cut(s)	58
Bst6I	CTCTTC	1 cut(s)	42
BstC8I	GCNNGC	1 cut(s)	371
BstDSI	CCRYGG	2 cut(s)	277, 298
BstF5I	GGATG	1 cut(s)	342
BstKTI	GATC	4 cut(s)	40, 54, 177, 250
BstMAI	GTCTC	1 cut(s)	120
BstMBI	GATC	4 cut(s)	37, 51, 174, 247
BstNI	CCWGG	1 cut(s)	332
BstSCI	CCNGG	1 cut(s)	330
BstSFI	CTRYAG	1 cut(s)	312
BstV1I	GCAGC	1 cut(s)	16
BstX2I	RGATCY	1 cut(s)	37
BstYI	RGATCY	1 cut(s)	37
BsuRI	GGCC	1 cut(s)	330
BtgI	CCRYGG	2 cut(s)	277, 298
BtsCI	GGATG	1 cut(s)	342
Cac8I	GCNNGC	1 cut(s)	371
Csp6I	GTAC	1 cut(s)	308
CviJI	RGCY	5 cut(s)	82, 92, 317, 330, 369
CviKI_1	RGCY	5 cut(s)	82, 92, 317, 330, 369
CviQI	GTAC	1 cut(s)	308
DpnI	GATC	4 cut(s)	39, 53, 176, 249
DpnII	GATC	4 cut(s)	37, 51, 174, 247
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Eco130I	CCWWGG	1 cut(s)	21
Eco32I	GATATC	1 cut(s)	284
Eco57I	CTGAAG	1 cut(s)	114
EcoRII	CCWGG	1 cut(s)	330
EcoRV	GATATC	1 cut(s)	284
EcoT14I	CCWWGG	1 cut(s)	21
ErhI	CCWWGG	1 cut(s)	21
FaiI	YATR	5 cut(s)	74, 195, 197, 253, 354
FaqI	GGGAC	2 cut(s)	119, 348
FblI	GTMKAC	1 cut(s)	267
Fnu4HI	GCNGC	1 cut(s)	5
FokI	GGATG	1 cut(s)	329
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	1 cut(s)	382
GluI	GCNGC	1 cut(s)	5
GsaI	CCCAGC	1 cut(s)	369
HaeIII	GGCC	1 cut(s)	330
HinfI	GANTC	2 cut(s)	112, 336
Hpy166II	GTNNAC	2 cut(s)	268, 308
Hpy188I	TCNGA	1 cut(s)	70
Hpy8I	GTNNAC	2 cut(s)	268, 308
HpyAV	CCTTC	1 cut(s)	116
HpyCH4III	ACNGT	1 cut(s)	58
HpyCH4V	TGCA	4 cut(s)	4, 139, 145, 182
Kzo9I	GATC	4 cut(s)	37, 51, 174, 247
LpnPI	CCDG	6 cut(s)	54, 150, 317, 344, 360, 379
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	3 cut(s)	126, 132, 346
MaeI	CTAG	1 cut(s)	382
MalI	GATC	4 cut(s)	39, 53, 176, 249
MboI	GATC	4 cut(s)	37, 51, 174, 247
MboII	GAAGA	4 cut(s)	59, 107, 145, 272
MflI	RGATCY	1 cut(s)	37
MlyI	GAGTC	1 cut(s)	330
MmeI	TCCRAC	2 cut(s)	48, 99
MnlI	CCTC	1 cut(s)	234
MseI	TTAA	3 cut(s)	78, 209, 243
MspA1I	CMGCKG	2 cut(s)	92, 317
MspR9I	CCNGG	1 cut(s)	332
MvaI	CCWGG	1 cut(s)	332
NdeII	GATC	4 cut(s)	37, 51, 174, 247
NlaIV	GGNNCC	1 cut(s)	19
PfeI	GAWTC	1 cut(s)	112
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	1 cut(s)	330
PpsI	GAGTC	1 cut(s)	330
Psp6I	CCWGG	1 cut(s)	330
PspFI	CCCAGC	1 cut(s)	365
PspGI	CCWGG	1 cut(s)	330
PspN4I	GGNNCC	1 cut(s)	19
PsuI	RGATCY	1 cut(s)	37
PvuII	CAGCTG	2 cut(s)	92, 317
RsaI	GTAC	1 cut(s)	309
RsaNI	GTAC	1 cut(s)	308
SaqAI	TTAA	3 cut(s)	78, 209, 243
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	4 cut(s)	37, 51, 174, 247
SchI	GAGTC	1 cut(s)	330
ScrFI	CCNGG	1 cut(s)	332
SetI	ASST	5 cut(s)	12, 94, 313, 319, 371
SfaNI	GCATC	3 cut(s)	126, 132, 346
SfcI	CTRYAG	1 cut(s)	312
SsiI	CCGC	1 cut(s)	62
SspMI	CTAG	1 cut(s)	382
StyD4I	CCNGG	1 cut(s)	330
StyI	CCWWGG	1 cut(s)	21
TaaI	ACNGT	1 cut(s)	58
TaqI	TCGA	1 cut(s)	186
TfiI	GAWTC	1 cut(s)	112
Tru1I	TTAA	3 cut(s)	78, 209, 243
Tru9I	TTAA	3 cut(s)	78, 209, 243
TseI	GCWGC	1 cut(s)	4
TspGWI	ACGGA	2 cut(s)	266, 287
XmiI	GTMKAC	1 cut(s)	267
XspI	CTAG	1 cut(s)	382

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.