Rmu_sc0006867.1_g000019

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006867.1
OG0000270
Physical Location & Seq
Forward (+)
102432 .. 103217
786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006867.1_g000019.1.cds

Sequence Viewer

Length: 786 bp
atgtgtaaaacaacccgtaggttgtctcgggatttcaagctctctgattattgtttccaagacttaggctctaagaaacgacgacgtccagttgtggtagggacgcaaaatgacttggttttgtggtgcgcaagaaagaagtatcaacgccattattacatatgtaatccatacaccaagcaatgtgttgctcttcctcctacccctggactctacaaacatgcacgagtgggcttcatttgcgatccctactatatctacgagagttcttctccagtcgtcaatgagcttaatgctgattataggtgcagggttgtgcgattacttccaaagttgaggatggagaaattctcttctgagacgggtcaatggagagaaatgatgttatgcccgacagttcttggagatatctatgagctaaagccaagtttcttcaaacaaattgtgactgcgggctttgcttacaatggaaagttgtattggtgcggtggccgtatatataagtcgcctccatttacttttgagttggatccattctgtacgagtactaccactactgtcaatgccaatggtggtggtggtgatattattgatgtttttgactcgtgtcgtttcatcgaggggccattagacttgcaagacctgagcgattactgtttcccagttttaggtgtgtgccgaggtagtcctctacgggcatgtaatttcgaactttctggcattgatgatcgtataaggatttgggagttaagagaggaggttggaggtaaaagaaatggcatttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

261

Amino Acids

29.99

Weight (kDa)

8.87

Isoelectric Point (pI)

48.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 88
Acc16I TGCGCA 1 cut(s) 130
AciI CCGC 2 cut(s) 452, 486
AclWI GGATC 3 cut(s) 239, 524, 537
AcoI YGGCCR 1 cut(s) 490
AcsI RAATTY 1 cut(s) 347
AcyI GRCGYC 1 cut(s) 85
AfaI GTAC 2 cut(s) 541, 547
AfiI CCNNNNNNNGG 2 cut(s) 206, 668
AgsI TTSAA 2 cut(s) 37, 436
AjnI CCWGG 1 cut(s) 205
AjuI GAANNNNNNNTTGG 2 cut(s) 463, 495
AluBI AGCT 3 cut(s) 40, 289, 418
AluI AGCT 3 cut(s) 40, 289, 418
Alw26I GTCTC 2 cut(s) 30, 353
AlwI GGATC 3 cut(s) 239, 524, 537
Ama87I CYCGRG 1 cut(s) 27
AoxI GGCC 2 cut(s) 490, 623
ApoI RAATTY 1 cut(s) 347
AspLEI GCGC 1 cut(s) 131
AspS9I GGNCC 1 cut(s) 623
AsuHPI GGTGA 1 cut(s) 593
AsuII TTCGAA 1 cut(s) 708
AvaI CYCGRG 1 cut(s) 27
BamHI GGATCC 1 cut(s) 529
BauI CACGAG 2 cut(s) 225, 604
BccI CCATC 1 cut(s) 334
BceAI ACGGC 1 cut(s) 477
BciT130I CCWGG 1 cut(s) 207
BcoDI GTCTC 2 cut(s) 30, 353
BmcAI AGTACT 1 cut(s) 547
Bme1390I CCNGG 1 cut(s) 207
BmeT110I CYCGRG 1 cut(s) 27
BmgT120I GGNCC 1 cut(s) 623
BmiI GGNNCC 2 cut(s) 531, 624
BmrFI CCNGG 1 cut(s) 207
BmrI ACTGGG 1 cut(s) 656
BmuI ACTGGG 1 cut(s) 656
BoxI GACNNNNGTC 1 cut(s) 606
BplI GAGNNNNNCTC 4 cut(s) 256, 288, 335, 367
BpmI CTGGAG 1 cut(s) 258
Bpu10I CCTNAGC 1 cut(s) 644
Bpu14I TTCGAA 1 cut(s) 708
BsaHI GRCGYC 1 cut(s) 85
BsaJI CCNNGG 2 cut(s) 205, 679
Bsc4I CCNNNNNNNGG 2 cut(s) 206, 668
Bse1I ACTGG 3 cut(s) 89, 275, 662
Bse3DI GCAATG 1 cut(s) 188
BseBI CCWGG 1 cut(s) 207
BseDI CCNNGG 2 cut(s) 205, 679
BseGI GGATG 1 cut(s) 345
BseLI CCNNNNNNNGG 2 cut(s) 206, 668
BseMI GCAATG 1 cut(s) 188
BseMII CTCAG 2 cut(s) 348, 635
BseNI ACTGG 3 cut(s) 89, 275, 662
BseRI GAGGAG 1 cut(s) 770
BsgI GTGCAG 1 cut(s) 328
BshFI GGCC 2 cut(s) 492, 625
BsiHKCI CYCGRG 1 cut(s) 27
BslFI GGGAC 1 cut(s) 115
BslI CCNNNNNNNGG 2 cut(s) 206, 668
BsmAI GTCTC 2 cut(s) 30, 353
BsmBI CGTCTC 1 cut(s) 353
BsmFI GGGAC 1 cut(s) 115
BsnI GGCC 2 cut(s) 492, 625
BsoBI CYCGRG 1 cut(s) 27
Bsp119I TTCGAA 1 cut(s) 708
Bsp143I GATC 3 cut(s) 244, 529, 727
BspACI CCGC 2 cut(s) 452, 486
BspANI GGCC 2 cut(s) 492, 625
BspCNI CTCAG 2 cut(s) 349, 636
BspLI GGNNCC 2 cut(s) 531, 624
BspPI GGATC 3 cut(s) 239, 524, 537
BspQI GCTCTTC 1 cut(s) 198
BspT104I TTCGAA 1 cut(s) 708
BsrDI GCAATG 1 cut(s) 188
BsrI ACTGG 3 cut(s) 89, 275, 662
BssECI CCNNGG 2 cut(s) 205, 679
BssMI GATC 3 cut(s) 244, 529, 727
BssNI GRCGYC 1 cut(s) 85
BssSI CACGAG 2 cut(s) 225, 604
Bst2BI CACGAG 2 cut(s) 225, 604
Bst2UI CCWGG 1 cut(s) 207
Bst4CI ACNGT 3 cut(s) 397, 559, 656
Bst6I CTCTTC 2 cut(s) 198, 358
BstACI GRCGYC 1 cut(s) 85
BstBI TTCGAA 1 cut(s) 708
BstC8I GCNNGC 1 cut(s) 454
BstDEI CTNAG 4 cut(s) 64, 72, 357, 644
BstF5I GGATG 1 cut(s) 345
BstHHI GCGC 1 cut(s) 131
BstKTI GATC 3 cut(s) 247, 532, 730
BstMAI GTCTC 2 cut(s) 30, 353
BstMBI GATC 3 cut(s) 244, 529, 727
BstMWI GCNNNNNNNGC 2 cut(s) 240, 458
BstNI CCWGG 1 cut(s) 207
BstNSI RCATGY 2 cut(s) 224, 702
BstPAI GACNNNNGTC 1 cut(s) 606
BstSCI CCNGG 1 cut(s) 205
BstX2I RGATCY 1 cut(s) 529
BstYI RGATCY 1 cut(s) 529
BsuRI GGCC 2 cut(s) 492, 625
BtsCI GGATG 1 cut(s) 345
Cac8I GCNNGC 1 cut(s) 454
CfoI GCGC 1 cut(s) 131
Cfr13I GGNCC 1 cut(s) 623
CseI GACGC 1 cut(s) 112
Csp6I GTAC 2 cut(s) 540, 546
CspCI CAANNNNNGTGG 2 cut(s) 556, 591
CviAII CATG 2 cut(s) 221, 699
CviJI RGCY 9 cut(s) 40, 69, 234, 289, 418, 424, 456, 492, 625
CviKI_1 RGCY 9 cut(s) 40, 69, 234, 289, 418, 424, 456, 492, 625
CviQI GTAC 2 cut(s) 540, 546
DdeI CTNAG 4 cut(s) 64, 72, 357, 644
DpnI GATC 3 cut(s) 246, 531, 729
DpnII GATC 3 cut(s) 244, 529, 727
EaeI YGGCCR 1 cut(s) 490
Eam1104I CTCTTC 2 cut(s) 198, 358
EarI CTCTTC 2 cut(s) 198, 358
Eco32I GATATC 1 cut(s) 409
Eco88I CYCGRG 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 205
EcoRV GATATC 1 cut(s) 409
Esp3I CGTCTC 1 cut(s) 353
FaeI CATG 2 cut(s) 224, 702
FaqI GGGAC 1 cut(s) 115
FatI CATG 2 cut(s) 220, 698
FauI CCCGC 1 cut(s) 445
FauNDI CATATG 1 cut(s) 161
FokI GGATG 1 cut(s) 352
FspI TGCGCA 1 cut(s) 130
GlaI GCGC 1 cut(s) 130
GsuI CTGGAG 1 cut(s) 258
HaeIII GGCC 2 cut(s) 492, 625
HgaI GACGC 1 cut(s) 112
HhaI GCGC 1 cut(s) 131
Hin1I GRCGYC 1 cut(s) 85
Hin1II CATG 2 cut(s) 224, 702
Hin6I GCGC 1 cut(s) 129
HinP1I GCGC 1 cut(s) 129
HinfI GANTC 2 cut(s) 210, 602
HphI GGTGA 1 cut(s) 593
Hpy188I TCNGA 2 cut(s) 46, 358
Hpy188III TCNNGA 1 cut(s) 29
Hpy99I CGWCG 2 cut(s) 84, 87
HpyCH4III ACNGT 3 cut(s) 397, 559, 656
HpyCH4IV ACGT 1 cut(s) 85
HpyCH4V TGCA 3 cut(s) 224, 309, 637
HpyF10VI GCNNNNNNNGC 2 cut(s) 240, 458
HpyF3I CTNAG 4 cut(s) 64, 72, 357, 644
HpySE526I ACGT 1 cut(s) 85
Hsp92I GRCGYC 1 cut(s) 85
Hsp92II CATG 2 cut(s) 224, 702
HspAI GCGC 1 cut(s) 129
Kzo9I GATC 3 cut(s) 244, 529, 727
LguI GCTCTTC 1 cut(s) 198
LpnPI CCDG 8 cut(s) 102, 192, 219, 288, 295, 656, 675, 702
MaeII ACGT 1 cut(s) 85
MaeIII GTNAC 1 cut(s) 445
MalI GATC 3 cut(s) 246, 531, 729
MboI GATC 3 cut(s) 244, 529, 727
MboII GAAGA 4 cut(s) 185, 261, 345, 424
MflI RGATCY 1 cut(s) 529
MluCI AATT 3 cut(s) 347, 441, 703
MlyI GAGTC 2 cut(s) 204, 596
MmeI TCCRAC 2 cut(s) 507, 742
MnlI CCTC 9 cut(s) 207, 330, 519, 613, 674, 699, 748, 751, 758
MseI TTAA 2 cut(s) 291, 749
MspR9I CCNGG 1 cut(s) 207
MvaI CCWGG 1 cut(s) 207
MwoI GCNNNNNNNGC 2 cut(s) 240, 458
NdeI CATATG 1 cut(s) 161
NdeII GATC 3 cut(s) 244, 529, 727
NlaIII CATG 2 cut(s) 224, 702
NlaIV GGNNCC 2 cut(s) 531, 624
NmeAIII GCCGAG 1 cut(s) 704
NmuCI GTSAC 1 cut(s) 445
NsbI TGCGCA 1 cut(s) 130
NspI RCATGY 2 cut(s) 224, 702
NspV TTCGAA 1 cut(s) 708
PciSI GCTCTTC 1 cut(s) 198
PflFI GACNNNGTC 1 cut(s) 84
PleI GAGTC 2 cut(s) 204, 596
PpsI GAGTC 2 cut(s) 204, 596
PshAI GACNNNNGTC 1 cut(s) 606
Psp6I CCWGG 1 cut(s) 205
PspGI CCWGG 1 cut(s) 205
PspN4I GGNNCC 2 cut(s) 531, 624
PspPI GGNCC 1 cut(s) 623
PsuI RGATCY 1 cut(s) 529
PsyI GACNNNGTC 1 cut(s) 84
RsaI GTAC 2 cut(s) 541, 547
RsaNI GTAC 2 cut(s) 540, 546
SapI GCTCTTC 1 cut(s) 198
SaqAI TTAA 2 cut(s) 291, 749
Sau3AI GATC 3 cut(s) 244, 529, 727
Sau96I GGNCC 1 cut(s) 623
ScaI AGTACT 1 cut(s) 547
SchI GAGTC 2 cut(s) 204, 596
ScrFI CCNGG 1 cut(s) 207
SfuI TTCGAA 1 cut(s) 708
Sse9I AATT 3 cut(s) 347, 441, 703
SsiI CCGC 2 cut(s) 452, 486
StyD4I CCNGG 1 cut(s) 205
TaaI ACNGT 3 cut(s) 397, 559, 656
TaiI ACGT 1 cut(s) 88
TaqI TCGA 2 cut(s) 618, 708
TasI AATT 3 cut(s) 347, 441, 703
TatI WGTACW 1 cut(s) 545
Tru1I TTAA 2 cut(s) 291, 749
Tru9I TTAA 2 cut(s) 291, 749
TseFI GTSAC 1 cut(s) 445
Tsp45I GTSAC 1 cut(s) 445
TspDTI ATGAA 2 cut(s) 226, 604
Tth111I GACNNNGTC 1 cut(s) 84
XapI RAATTY 1 cut(s) 347
XceI RCATGY 2 cut(s) 224, 702
ZraI GACGTC 1 cut(s) 86
ZrmI AGTACT 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.