Rh3BG023200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0000270
Physical Location & Seq
Forward (+)
1515593 .. 1516346
754 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG023200.1

Sequence Viewer

Length: 651 bp
ATGTGCCCGTCTTGGTTTAATGTTACTGATAAAGTCATAATTTGGGAGTTGAGAGAAAATCAAGTGGATAGCAAACAAGAATGGTGTGTGATATGCGACGGAGCTTCTCTGTCCCAGATGGTTCATAAACAACCTTTAGTCCTTGATCGAAAGAAACTTTGCATATCGCAAGTGGTAGGTTTCCACCCTAGTGATGGAGATATCCTGTATTTACAACTCCCTGGATATACAGTCATGTGCAATGTTCTTGAAAAGACGTTAGAGATGGCAACAAAAAATCCATTTCATGACAATGAATGGTCTTACAAGTCTTATAAGTCTCACCGGGAAAGTTATCCACTTGTGTTCCCATGGTGGCCGACGCCAGTTCAAAGAAGACTAGACTATCGTGAGGAGTACTTCAACATAAGAGTGACTGGGAAATACAACATTACTGTTGGGGTAGGTTGCTTGACTACTCTTAAACAATTGAAAAAAATGCTGGGAGAGGATGAATTATACTTTAATGAGCTACTTTTAGAGAAAGATGGTGATGATATGCAGCTTACGCTCCTCGGAATTGGAGAGGATTCTGAGATTCACATTGTTGAAGATTGTTGGAGAAAGCCTGCTCGGAGGAAGAGGAAGAGAAAGAGGATAGCTCAACGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

216

Amino Acids

25.52

Weight (kDa)

8.1

Isoelectric Point (pI)

45.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 315
AcoI YGGCCR 1 cut(s) 356
AcyI GRCGYC 1 cut(s) 362
AfaI GTAC 1 cut(s) 398
AfiI CCNNNNNNNGG 1 cut(s) 194
AgsI TTSAA 5 cut(s) 251, 371, 403, 472, 590
AjnI CCWGG 1 cut(s) 220
AleI CACNNNNGTG 1 cut(s) 189
AluBI AGCT 4 cut(s) 104, 511, 544, 641
AluI AGCT 4 cut(s) 104, 511, 544, 641
Alw26I GTCTC 1 cut(s) 324
AoxI GGCC 1 cut(s) 356
ApeKI GCWGC 1 cut(s) 541
AsuC2I CCSGG 1 cut(s) 326
AsuHPI GGTGA 2 cut(s) 314, 542
BaeGI GKGCMC 1 cut(s) 8
BbsI GAAGAC 1 cut(s) 382
BbvI GCAGC 1 cut(s) 553
BccI CCATC 4 cut(s) 112, 188, 259, 521
BciT130I CCWGG 1 cut(s) 222
BcnI CCSGG 1 cut(s) 326
BcoDI GTCTC 1 cut(s) 324
BfaI CTAG 2 cut(s) 189, 380
BisI GCNGC 1 cut(s) 542
BlsI GCNGC 1 cut(s) 543
BmcAI AGTACT 1 cut(s) 398
Bme1390I CCNGG 2 cut(s) 222, 326
BmrFI CCNGG 2 cut(s) 222, 326
BmrI ACTGGG 1 cut(s) 426
BmuI ACTGGG 1 cut(s) 426
BpiI GAAGAC 1 cut(s) 382
BplI GAGNNNNNCTC 1 cut(s) 625
BpuMI CCSGG 1 cut(s) 326
BsaHI GRCGYC 1 cut(s) 362
BsaJI CCNNGG 3 cut(s) 220, 350, 553
Bsc4I CCNNNNNNNGG 1 cut(s) 194
Bse1I ACTGG 2 cut(s) 365, 421
Bse3DI GCAATG 1 cut(s) 247
BseBI CCWGG 1 cut(s) 222
BseDI CCNNGG 3 cut(s) 220, 350, 553
BseGI GGATG 1 cut(s) 496
BseLI CCNNNNNNNGG 1 cut(s) 194
BseMI GCAATG 1 cut(s) 247
BseMII CTCAG 1 cut(s) 564
BseNI ACTGG 2 cut(s) 365, 421
BseRI GAGGAG 2 cut(s) 407, 542
BseSI GKGCMC 1 cut(s) 8
BseXI GCAGC 1 cut(s) 553
BseYI CCCAGC 1 cut(s) 481
BshFI GGCC 1 cut(s) 358
BsiSI CCGG 1 cut(s) 325
BslFI GGGAC 1 cut(s) 97
BslI CCNNNNNNNGG 1 cut(s) 194
BsmAI GTCTC 1 cut(s) 324
BsmFI GGGAC 1 cut(s) 97
BsnI GGCC 1 cut(s) 358
Bsp1286I GDGCHC 1 cut(s) 8
Bsp143I GATC 1 cut(s) 145
Bsp19I CCATGG 1 cut(s) 350
BspANI GGCC 1 cut(s) 358
BspCNI CTCAG 1 cut(s) 565
BspHI TCATGA 1 cut(s) 286
BsrDI GCAATG 1 cut(s) 247
BsrI ACTGG 2 cut(s) 365, 421
BssECI CCNNGG 3 cut(s) 220, 350, 553
BssMI GATC 1 cut(s) 145
BssNI GRCGYC 1 cut(s) 362
BssT1I CCWWGG 1 cut(s) 350
Bst2UI CCWGG 1 cut(s) 222
Bst4CI ACNGT 2 cut(s) 232, 436
Bst6I CTCTTC 2 cut(s) 614, 620
BstACI GRCGYC 1 cut(s) 362
BstC8I GCNNGC 1 cut(s) 609
BstDEI CTNAG 1 cut(s) 573
BstDSI CCRYGG 1 cut(s) 350
BstF5I GGATG 1 cut(s) 496
BstKTI GATC 1 cut(s) 148
BstMAI GTCTC 1 cut(s) 324
BstMBI GATC 1 cut(s) 145
BstMWI GCNNNNNNNGC 1 cut(s) 547
BstNI CCWGG 1 cut(s) 222
BstSCI CCNGG 2 cut(s) 220, 324
BstSLI GKGCMC 1 cut(s) 8
BstV1I GCAGC 1 cut(s) 553
BstV2I GAAGAC 1 cut(s) 382
BsuRI GGCC 1 cut(s) 358
BtgI CCRYGG 1 cut(s) 350
BtsCI GGATG 1 cut(s) 496
Cac8I GCNNGC 1 cut(s) 609
CciI TCATGA 1 cut(s) 286
CseI GACGC 1 cut(s) 370
Csp6I GTAC 1 cut(s) 397
CviAII CATG 3 cut(s) 235, 287, 351
CviJI RGCY 6 cut(s) 104, 358, 511, 544, 607, 641
CviKI_1 RGCY 6 cut(s) 104, 358, 511, 544, 607, 641
CviQI GTAC 1 cut(s) 397
DdeI CTNAG 1 cut(s) 573
DpnI GATC 1 cut(s) 147
DpnII GATC 1 cut(s) 145
EaeI YGGCCR 1 cut(s) 356
Eam1104I CTCTTC 2 cut(s) 614, 620
EarI CTCTTC 2 cut(s) 614, 620
Eco130I CCWWGG 1 cut(s) 350
Eco32I GATATC 1 cut(s) 202
EcoRII CCWGG 1 cut(s) 220
EcoRV GATATC 1 cut(s) 202
EcoT14I CCWWGG 1 cut(s) 350
ErhI CCWWGG 1 cut(s) 350
FaeI CATG 3 cut(s) 238, 290, 354
FaqI GGGAC 1 cut(s) 97
FatI CATG 3 cut(s) 234, 286, 350
Fnu4HI GCNGC 1 cut(s) 542
FokI GGATG 1 cut(s) 503
Fsp4HI GCNGC 1 cut(s) 542
FspBI CTAG 2 cut(s) 189, 380
GluI GCNGC 1 cut(s) 542
GsaI CCCAGC 1 cut(s) 485
HaeIII GGCC 1 cut(s) 358
HapII CCGG 1 cut(s) 325
HgaI GACGC 1 cut(s) 370
Hin1I GRCGYC 1 cut(s) 362
Hin1II CATG 3 cut(s) 238, 290, 354
HinfI GANTC 2 cut(s) 569, 577
HpaII CCGG 1 cut(s) 325
HphI GGTGA 2 cut(s) 314, 542
Hpy188I TCNGA 3 cut(s) 557, 574, 615
Hpy188III TCNNGA 3 cut(s) 248, 287, 389
Hpy99I CGWCG 2 cut(s) 101, 364
HpyCH4III ACNGT 2 cut(s) 232, 436
HpyCH4IV ACGT 1 cut(s) 257
HpyCH4V TGCA 3 cut(s) 162, 240, 541
HpyF10VI GCNNNNNNNGC 1 cut(s) 547
HpyF3I CTNAG 1 cut(s) 573
HpySE526I ACGT 1 cut(s) 257
Hsp92I GRCGYC 1 cut(s) 362
Hsp92II CATG 3 cut(s) 238, 290, 354
Kzo9I GATC 1 cut(s) 145
LmnI GCTCC 2 cut(s) 101, 555
LpnPI CCDG 9 cut(s) 128, 207, 218, 234, 338, 378, 402, 467, 621
Lsp1109I GCAGC 1 cut(s) 553
MaeI CTAG 2 cut(s) 189, 380
MaeII ACGT 1 cut(s) 257
MaeIII GTNAC 2 cut(s) 22, 412
MalI GATC 1 cut(s) 147
MboI GATC 1 cut(s) 145
MboII GAAGA 4 cut(s) 387, 602, 631, 637
MfeI CAATTG 1 cut(s) 467
MhlI GDGCHC 1 cut(s) 8
MluCI AATT 4 cut(s) 39, 467, 494, 558
MmeI TCCRAC 1 cut(s) 578
MnlI CCTC 7 cut(s) 385, 481, 559, 563, 609, 615, 627
MseI TTAA 3 cut(s) 18, 462, 504
MslI CAYNNNNRTG 3 cut(s) 189, 291, 410
MspI CCGG 1 cut(s) 325
MspR9I CCNGG 2 cut(s) 222, 326
MunI CAATTG 1 cut(s) 467
MvaI CCWGG 1 cut(s) 222
MwoI GCNNNNNNNGC 1 cut(s) 547
NciI CCSGG 1 cut(s) 326
NcoI CCATGG 1 cut(s) 350
NdeII GATC 1 cut(s) 145
NlaIII CATG 3 cut(s) 238, 290, 354
NmuCI GTSAC 1 cut(s) 412
OliI CACNNNNGTG 1 cut(s) 189
PagI TCATGA 1 cut(s) 286
PfeI GAWTC 2 cut(s) 569, 577
PkrI GCNGC 1 cut(s) 543
PsiI TTATAA 1 cut(s) 315
Psp6I CCWGG 1 cut(s) 220
PspFI CCCAGC 1 cut(s) 481
PspGI CCWGG 1 cut(s) 220
RsaI GTAC 1 cut(s) 398
RsaNI GTAC 1 cut(s) 397
RseI CAYNNNNRTG 3 cut(s) 189, 291, 410
SaqAI TTAA 3 cut(s) 18, 462, 504
SatI GCNGC 1 cut(s) 542
Sau3AI GATC 1 cut(s) 145
ScaI AGTACT 1 cut(s) 398
ScrFI CCNGG 2 cut(s) 222, 326
SduI GDGCHC 1 cut(s) 8
SetI ASST 8 cut(s) 106, 136, 181, 260, 448, 513, 546, 643
SmiMI CAYNNNNRTG 3 cut(s) 189, 291, 410
Sse9I AATT 4 cut(s) 39, 467, 494, 558
SspMI CTAG 2 cut(s) 189, 380
StyD4I CCNGG 2 cut(s) 220, 324
StyI CCWWGG 1 cut(s) 350
TaaI ACNGT 2 cut(s) 232, 436
TaiI ACGT 1 cut(s) 260
TaqI TCGA 1 cut(s) 148
TasI AATT 4 cut(s) 39, 467, 494, 558
TatI WGTACW 1 cut(s) 396
TfiI GAWTC 2 cut(s) 569, 577
Tru1I TTAA 3 cut(s) 18, 462, 504
Tru9I TTAA 3 cut(s) 18, 462, 504
TseFI GTSAC 1 cut(s) 412
TseI GCWGC 1 cut(s) 541
Tsp45I GTSAC 1 cut(s) 412
TspDTI ATGAA 4 cut(s) 113, 275, 309, 507
TspGWI ACGGA 1 cut(s) 114
XcmI CCANNNNNNNNNTGG 1 cut(s) 191
XspI CTAG 2 cut(s) 189, 380
ZrmI AGTACT 1 cut(s) 398
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.