Rh6CG528700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000270
Physical Location & Seq
Reverse (-)
68245453 .. 68245971
519 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG528700.1

Sequence Viewer

Length: 519 bp
ATGTTGTACTTGTGGTGCCATAATGACCTTATACTTGAGTTGGATCTGTCCAAATCCAATACTGTTAAGTACCGTTGCATTGAGCCGCCTGAGGATTTTTCAAATGGAAGAGGGGGAAGAGGGTCGCTAGGAGTGAGCGGAGGGCGTCTGCTGTTATGCTTGGATACAGAATTTCTCCCTAGAGATCACGATGAGGTTCTGCTGCCATTTAGAGTTAGGGAGTTGAAACAAGTAGTCAAGGGCAACCAAGGCAAACTAAAATGGTTAGCCGACCGTGATACTATAGCTTGCAAAGATATTGAGGTCCCCGATCCAAACACGATTAGGGTGCTAGCTTTCCACCCAAACAATGAGGATGTCGTGTATTTGACTCTATACGGTAAAATTATCGCATGCAACCTTCGTGGAGGAACGTTAGAGACAACTACAGAGAGTCCAGTAAAGGGATCCGAGATGGATTTGTACTACCCGTTTTCTCTTCCATGGTGGCCTACCCCGGTTCCTAAGACTCTAGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

172

Amino Acids

19.52

Weight (kDa)

5.45

Isoelectric Point (pI)

40.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 15
AccBSI CCGCTC 1 cut(s) 138
AciI CCGC 2 cut(s) 86, 138
AclI AACGTT 1 cut(s) 413
AclWI GGATC 4 cut(s) 51, 305, 441, 454
AcsI RAATTY 1 cut(s) 170
AcyI GRCGYC 1 cut(s) 145
AfaI GTAC 3 cut(s) 8, 71, 464
AfiI CCNNNNNNNGG 1 cut(s) 443
AgsI TTSAA 2 cut(s) 102, 226
AluBI AGCT 2 cut(s) 287, 335
AluI AGCT 2 cut(s) 287, 335
Alw26I GTCTC 1 cut(s) 413
AlwI GGATC 4 cut(s) 51, 305, 441, 454
AoxI GGCC 1 cut(s) 488
ApeKI GCWGC 1 cut(s) 202
ApoI RAATTY 1 cut(s) 170
AspS9I GGNCC 1 cut(s) 304
AsuC2I CCSGG 1 cut(s) 497
AsuNHI GCTAGC 1 cut(s) 331
AvaII GGWCC 1 cut(s) 304
AxyI CCTNAGG 1 cut(s) 90
BamHI GGATCC 1 cut(s) 446
BanI GGYRCC 1 cut(s) 15
BbvI GCAGC 1 cut(s) 189
BccI CCATC 1 cut(s) 448
BcgI CGANNNNNNTGC 2 cut(s) 310, 344
BciVI GTATCC 1 cut(s) 157
BcnI CCSGG 1 cut(s) 497
BcoDI GTCTC 1 cut(s) 413
BfaI CTAG 4 cut(s) 128, 180, 332, 512
BfmI CTRYAG 2 cut(s) 282, 426
BfuI GTATCC 1 cut(s) 157
BisI GCNGC 2 cut(s) 86, 203
BlsI GCNGC 2 cut(s) 87, 204
Bme1390I CCNGG 1 cut(s) 497
Bme18I GGWCC 1 cut(s) 304
BmgT120I GGNCC 1 cut(s) 304
BmiI GGNNCC 4 cut(s) 17, 306, 448, 501
BmrFI CCNGG 1 cut(s) 497
BmtI GCTAGC 1 cut(s) 335
BpuEI CTTGAG 1 cut(s) 56
BpuMI CCSGG 1 cut(s) 497
BsaHI GRCGYC 1 cut(s) 145
BsaJI CCNNGG 3 cut(s) 247, 482, 495
Bsc4I CCNNNNNNNGG 1 cut(s) 443
Bse1I ACTGG 1 cut(s) 437
Bse21I CCTNAGG 1 cut(s) 90
BseDI CCNNGG 3 cut(s) 247, 482, 495
BseGI GGATG 1 cut(s) 361
BseLI CCNNNNNNNGG 1 cut(s) 443
BseMII CTCAG 1 cut(s) 81
BseNI ACTGG 1 cut(s) 437
BseXI GCAGC 1 cut(s) 189
Bsh1285I CGRYCG 1 cut(s) 274
BshFI GGCC 1 cut(s) 490
BshNI GGYRCC 1 cut(s) 15
BsiEI CGRYCG 1 cut(s) 274
BsiSI CCGG 1 cut(s) 497
BslFI GGGAC 1 cut(s) 290
BslI CCNNNNNNNGG 1 cut(s) 443
BsmAI GTCTC 1 cut(s) 413
BsmFI GGGAC 1 cut(s) 290
BsnI GGCC 1 cut(s) 490
Bsp143I GATC 4 cut(s) 43, 184, 310, 446
Bsp19I CCATGG 1 cut(s) 482
BspACI CCGC 2 cut(s) 86, 138
BspANI GGCC 1 cut(s) 490
BspCNI CTCAG 1 cut(s) 82
BspLI GGNNCC 4 cut(s) 17, 306, 448, 501
BspOI GCTAGC 1 cut(s) 335
BspPI GGATC 4 cut(s) 51, 305, 441, 454
BspT107I GGYRCC 1 cut(s) 15
BsrBI CCGCTC 1 cut(s) 138
BsrI ACTGG 1 cut(s) 437
BssECI CCNNGG 3 cut(s) 247, 482, 495
BssMI GATC 4 cut(s) 43, 184, 310, 446
BssNI GRCGYC 1 cut(s) 145
BssT1I CCWWGG 2 cut(s) 247, 482
Bst4CI ACNGT 4 cut(s) 64, 74, 275, 380
Bst6I CTCTTC 3 cut(s) 103, 112, 483
BstACI GRCGYC 1 cut(s) 145
BstC8I GCNNGC 3 cut(s) 289, 333, 394
BstDEI CTNAG 2 cut(s) 90, 504
BstDSI CCRYGG 1 cut(s) 482
BstF5I GGATG 1 cut(s) 361
BstKTI GATC 4 cut(s) 46, 187, 313, 449
BstMAI GTCTC 1 cut(s) 413
BstMBI GATC 4 cut(s) 43, 184, 310, 446
BstMCI CGRYCG 1 cut(s) 274
BstMWI GCNNNNNNNGC 1 cut(s) 249
BstNSI RCATGY 1 cut(s) 396
BstSCI CCNGG 1 cut(s) 495
BstSFI CTRYAG 2 cut(s) 282, 426
BstV1I GCAGC 1 cut(s) 189
BstX2I RGATCY 2 cut(s) 43, 446
BstYI RGATCY 2 cut(s) 43, 446
Bsu36I CCTNAGG 1 cut(s) 90
BsuI GTATCC 1 cut(s) 157
BsuRI GGCC 1 cut(s) 490
BtgI CCRYGG 1 cut(s) 482
BtsCI GGATG 1 cut(s) 361
Cac8I GCNNGC 3 cut(s) 289, 333, 394
Cfr13I GGNCC 1 cut(s) 304
CseI GACGC 1 cut(s) 134
Csp6I GTAC 3 cut(s) 7, 70, 463
CspCI CAANNNNNGTGG 2 cut(s) 385, 420
CviAII CATG 2 cut(s) 393, 483
CviJI RGCY 5 cut(s) 85, 269, 287, 335, 490
CviKI_1 RGCY 5 cut(s) 85, 269, 287, 335, 490
CviQI GTAC 3 cut(s) 7, 70, 463
DdeI CTNAG 2 cut(s) 90, 504
DpnI GATC 4 cut(s) 45, 186, 312, 448
DpnII GATC 4 cut(s) 43, 184, 310, 446
Eam1104I CTCTTC 3 cut(s) 103, 112, 483
EarI CTCTTC 3 cut(s) 103, 112, 483
Eco130I CCWWGG 2 cut(s) 247, 482
Eco47I GGWCC 1 cut(s) 304
Eco81I CCTNAGG 1 cut(s) 90
EcoO109I RGGNCCY 1 cut(s) 304
EcoT14I CCWWGG 2 cut(s) 247, 482
ErhI CCWWGG 2 cut(s) 247, 482
FaeI CATG 2 cut(s) 396, 486
FaiI YATR 7 cut(s) 21, 32, 157, 284, 376, 394, 484
FaqI GGGAC 1 cut(s) 290
FatI CATG 2 cut(s) 392, 482
Fnu4HI GCNGC 2 cut(s) 86, 203
FokI GGATG 1 cut(s) 368
Fsp4HI GCNGC 2 cut(s) 86, 203
FspBI CTAG 4 cut(s) 128, 180, 332, 512
GluI GCNGC 2 cut(s) 86, 203
HaeIII GGCC 1 cut(s) 490
HapII CCGG 1 cut(s) 497
HgaI GACGC 1 cut(s) 134
Hin1I GRCGYC 1 cut(s) 145
Hin1II CATG 2 cut(s) 396, 486
HinfI GANTC 3 cut(s) 370, 433, 508
HpaII CCGG 1 cut(s) 497
Hpy188I TCNGA 1 cut(s) 451
Hpy188III TCNNGA 2 cut(s) 188, 512
HpyAV CCTTC 1 cut(s) 410
HpyCH4III ACNGT 4 cut(s) 64, 74, 275, 380
HpyCH4IV ACGT 1 cut(s) 413
HpyCH4V TGCA 3 cut(s) 78, 291, 396
HpyF10VI GCNNNNNNNGC 1 cut(s) 249
HpyF3I CTNAG 2 cut(s) 90, 504
HpySE526I ACGT 1 cut(s) 413
Hsp92I GRCGYC 1 cut(s) 145
Hsp92II CATG 2 cut(s) 396, 486
Kzo9I GATC 4 cut(s) 43, 184, 310, 446
LpnPI CCDG 3 cut(s) 102, 450, 510
Lsp1109I GCAGC 1 cut(s) 189
MaeI CTAG 4 cut(s) 128, 180, 332, 512
MaeII ACGT 1 cut(s) 413
MalI GATC 4 cut(s) 45, 186, 312, 448
MbiI CCGCTC 1 cut(s) 138
MboI GATC 4 cut(s) 43, 184, 310, 446
MboII GAAGA 3 cut(s) 120, 129, 470
MflI RGATCY 2 cut(s) 43, 446
MluCI AATT 2 cut(s) 170, 384
MlyI GAGTC 3 cut(s) 364, 442, 502
MmeI TCCRAC 1 cut(s) 21
MnlI CCTC 8 cut(s) 85, 104, 113, 134, 187, 295, 346, 401
MseI TTAA 1 cut(s) 66
MspI CCGG 1 cut(s) 497
MspR9I CCNGG 1 cut(s) 497
MwoI GCNNNNNNNGC 1 cut(s) 249
NciI CCSGG 1 cut(s) 497
NcoI CCATGG 1 cut(s) 482
NdeII GATC 4 cut(s) 43, 184, 310, 446
NheI GCTAGC 1 cut(s) 331
NlaIII CATG 2 cut(s) 396, 486
NlaIV GGNNCC 4 cut(s) 17, 306, 448, 501
NspI RCATGY 1 cut(s) 396
PaeI GCATGC 1 cut(s) 396
PkrI GCNGC 2 cut(s) 87, 204
PleI GAGTC 3 cut(s) 364, 441, 502
PpsI GAGTC 3 cut(s) 364, 441, 502
PpuMI RGGWCCY 1 cut(s) 304
Psp1406I AACGTT 1 cut(s) 413
Psp5II RGGWCCY 1 cut(s) 304
PspN4I GGNNCC 4 cut(s) 17, 306, 448, 501
PspPI GGNCC 1 cut(s) 304
PspPPI RGGWCCY 1 cut(s) 304
PsuI RGATCY 2 cut(s) 43, 446
RsaI GTAC 3 cut(s) 8, 71, 464
RsaNI GTAC 3 cut(s) 7, 70, 463
SaqAI TTAA 1 cut(s) 66
SatI GCNGC 2 cut(s) 86, 203
Sau3AI GATC 4 cut(s) 43, 184, 310, 446
Sau96I GGNCC 1 cut(s) 304
SchI GAGTC 3 cut(s) 364, 442, 502
ScrFI CCNGG 1 cut(s) 497
SetI ASST 7 cut(s) 30, 198, 289, 306, 337, 402, 416
SfcI CTRYAG 2 cut(s) 282, 426
SinI GGWCC 1 cut(s) 304
SmlI CTYRAG 1 cut(s) 35
SmoI CTYRAG 1 cut(s) 35
SphI GCATGC 1 cut(s) 396
Sse9I AATT 2 cut(s) 170, 384
SsiI CCGC 2 cut(s) 86, 138
SspMI CTAG 4 cut(s) 128, 180, 332, 512
StyD4I CCNGG 1 cut(s) 495
StyI CCWWGG 2 cut(s) 247, 482
TaaI ACNGT 4 cut(s) 64, 74, 275, 380
TaiI ACGT 1 cut(s) 416
TasI AATT 2 cut(s) 170, 384
TatI WGTACW 2 cut(s) 6, 462
TauI GCSGC 1 cut(s) 88
Tru1I TTAA 1 cut(s) 66
Tru9I TTAA 1 cut(s) 66
TseI GCWGC 1 cut(s) 202
VpaK11BI GGWCC 1 cut(s) 304
XapI RAATTY 1 cut(s) 170
XbaI TCTAGA 1 cut(s) 511
XceI RCATGY 1 cut(s) 396
XspI CTAG 4 cut(s) 128, 180, 332, 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.