Rw2G039750

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0000270
Physical Location & Seq
Reverse (-)
65226668 .. 65227750
1083 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G039750.1

Sequence Viewer

Length: 1083 bp
ATGTTCAAAACACACAACTTCTCTTTGAGTTTCCTCCGCTGTTTTGAACCTCCAGAGTTCATAGAAACAGATGATGATATTGATGATGGGCCAATTGTGGTCGGGACGTGCAATGACTTGGTTTTGTGCTGCGAAACCACAACTTTTCAAAGTTGTTACTACATTTGCAATCCATGCACCAAGCAATTTGTTCATCTTCCGCCCACCCCTCGACGCTACAAGGAAGTAAGAGTGGGATTCATCTGTGATCCCTATTATAAGGAAGATGGTGATGATCAGAAAGAAGAAAGTGATATCATCCAGGTTGATGCTGATTTCAGGTACGCTGTTGTGCGAATAGGTCCTTGCTCATCCCCATTTAAATTCAACCTTGAGATCTTCTCTTCAGAAACAGGTAAATGGACAGAATCGACTATAATGAGCACATGTAACTTTCGTTTGGACAATCTGAATCGCAGCGGAGGCGTTCCTTATAATGGAATGTTATATTGGTTGAATGCTGATTATCAAGATGCCTTCATTGTTGGGTTGGATCCCTACTATTACTCGAACAAAAACAACAATGATGAATGTCCTGGTTTTCATTTTATTGAATTGCCAGAAAGGTATGGACAATTTCCCTTCTTAGCTGTCTGCGGAGGAGGACGTCTGCGAATTTGCCATTTCTTTACTAATCAATTACGTGTCCCGATTCCCTTCTCTCATGAAACTATTGACGTCCCTATGCCGTGTATGAGTGTGTGGGAATTGAAAGATGATGTTGATGACGATGTAAATGATTGGTATAACTTGACAGGCATCATTGACCTGAGCACAATGGTTTTCGGAAATCCATTAACTCGCGAATGGGGATTCTACTCGAAGACCCCTTTGCTTGACTCAATCATGGTGCTGGCTTTCGATCCAAATAATGAAGATATACTTTATCTAGAATTGTTTGACCACATTGTAGCATGCAATATTTCTGAAAGAGCGATAAAGGGAACTACATTAACCATTCCATATAGAAGTACGGTTCGTTTTGGGAGAGGCGTCTTCCCATTTGTGATCCCAAAGTGGCCAACACCCCCTCCCAGACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

360

Amino Acids

41.5

Weight (kDa)

4.63

Isoelectric Point (pI)

44.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 33 - 270 3.2e-12 F-box protein At3g26010-like, beta-propeller
FBA_1 PF07734 34 - 168 9e-07 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 258, 474
AatII GACGTC 2 cut(s) 649, 720
AccII CGCG 1 cut(s) 843
AciI CCGC 4 cut(s) 37, 200, 459, 636
AclWI GGATC 5 cut(s) 242, 527, 540, 896, 1042
AcoI YGGCCR 1 cut(s) 1058
AcsI RAATTY 2 cut(s) 362, 654
AcuI CTGAAG 1 cut(s) 369
AcyI GRCGYC 3 cut(s) 646, 717, 1032
AfaI GTAC 2 cut(s) 323, 1012
AfiI CCNNNNNNNGG 1 cut(s) 476
AflIII ACRYGT 2 cut(s) 425, 682
AgsI TTSAA 7 cut(s) 7, 47, 149, 367, 496, 593, 751
AjiI CACGTC 1 cut(s) 108
AjnI CCWGG 2 cut(s) 300, 574
AjuI GAANNNNNNNTTGG 2 cut(s) 472, 504
AluBI AGCT 1 cut(s) 629
AluI AGCT 1 cut(s) 629
Alw21I GWGCWC 2 cut(s) 425, 815
AlwI GGATC 5 cut(s) 242, 527, 540, 896, 1042
AoxI GGCC 2 cut(s) 89, 1058
ApeKI GCWGC 2 cut(s) 129, 456
ApoI RAATTY 2 cut(s) 362, 654
AspS9I GGNCC 2 cut(s) 89, 341
AsuHPI GGTGA 1 cut(s) 281
AvaII GGWCC 1 cut(s) 341
BalI TGGCCA 1 cut(s) 1060
BamHI GGATCC 1 cut(s) 532
BbsI GAAGAC 2 cut(s) 869, 1027
Bbv12I GWGCWC 2 cut(s) 425, 815
BbvI GCAGC 2 cut(s) 116, 468
BccI CCATC 2 cut(s) 80, 260
BceAI ACGGC 1 cut(s) 712
BciT130I CCWGG 2 cut(s) 302, 576
BclI TGATCA 1 cut(s) 274
BfaI CTAG 1 cut(s) 929
BglII AGATCT 1 cut(s) 375
BisI GCNGC 2 cut(s) 130, 457
BlsI GCNGC 2 cut(s) 131, 458
Bme1390I CCNGG 2 cut(s) 302, 576
Bme18I GGWCC 1 cut(s) 341
BmgBI CACGTC 1 cut(s) 108
BmgT120I GGNCC 2 cut(s) 89, 341
BmiI GGNNCC 1 cut(s) 534
BmrFI CCNGG 2 cut(s) 302, 576
BmsI GCATC 3 cut(s) 298, 502, 807
BpiI GAAGAC 2 cut(s) 869, 1027
BplI GAGNNNNNCTC 2 cut(s) 365, 397
BpmI CTGGAG 1 cut(s) 36
Bpu10I CCTNAGC 1 cut(s) 809
BpuEI CTTGAG 1 cut(s) 392
BsaAI YACGTR 1 cut(s) 683
BsaHI GRCGYC 3 cut(s) 646, 717, 1032
BsaXI ACNNNNNCTCC 1 cut(s) 1054
Bsc4I CCNNNNNNNGG 1 cut(s) 476
Bse3DI GCAATG 1 cut(s) 118
BseBI CCWGG 2 cut(s) 302, 576
BseGI GGATG 2 cut(s) 297, 350
BseLI CCNNNNNNNGG 1 cut(s) 476
BseMI GCAATG 1 cut(s) 118
BseMII CTCAG 1 cut(s) 800
BseRI GAGGAG 1 cut(s) 654
BseXI GCAGC 2 cut(s) 116, 468
Bsh1236I CGCG 1 cut(s) 843
BshFI GGCC 2 cut(s) 91, 1060
BsiHKAI GWGCWC 2 cut(s) 425, 815
BslFI GGGAC 3 cut(s) 118, 671, 704
BslI CCNNNNNNNGG 1 cut(s) 476
BsmFI GGGAC 3 cut(s) 118, 671, 704
BsmI GAATGC 1 cut(s) 502
BsnI GGCC 2 cut(s) 91, 1060
Bsp1286I GDGCHC 2 cut(s) 425, 815
Bsp143I GATC 6 cut(s) 247, 274, 375, 532, 901, 1047
Bsp68I TCGCGA 1 cut(s) 843
BspACI CCGC 4 cut(s) 37, 200, 459, 636
BspANI GGCC 2 cut(s) 91, 1060
BspCNI CTCAG 1 cut(s) 801
BspFNI CGCG 1 cut(s) 843
BspHI TCATGA 1 cut(s) 703
BspLI GGNNCC 1 cut(s) 534
BspPI GGATC 5 cut(s) 242, 527, 540, 896, 1042
BsrDI GCAATG 1 cut(s) 118
BssMI GATC 6 cut(s) 247, 274, 375, 532, 901, 1047
BssNI GRCGYC 3 cut(s) 646, 717, 1032
Bst2UI CCWGG 2 cut(s) 302, 576
Bst4CI ACNGT 1 cut(s) 1015
Bst6I CTCTTC 1 cut(s) 388
BstACI GRCGYC 3 cut(s) 646, 717, 1032
BstAPI GCANNNNNTGC 1 cut(s) 174
BstBAI YACGTR 1 cut(s) 683
BstC8I GCNNGC 2 cut(s) 894, 955
BstDEI CTNAG 2 cut(s) 625, 809
BstF5I GGATG 2 cut(s) 297, 350
BstFNI CGCG 1 cut(s) 843
BstKTI GATC 6 cut(s) 250, 277, 378, 535, 904, 1050
BstMBI GATC 6 cut(s) 247, 274, 375, 532, 901, 1047
BstMWI GCNNNNNNNGC 2 cut(s) 174, 462
BstNI CCWGG 2 cut(s) 302, 576
BstNSI RCATGY 2 cut(s) 429, 957
BstSCI CCNGG 2 cut(s) 300, 574
BstUI CGCG 1 cut(s) 843
BstV1I GCAGC 2 cut(s) 116, 468
BstV2I GAAGAC 2 cut(s) 869, 1027
BstX2I RGATCY 2 cut(s) 375, 532
BstYI RGATCY 2 cut(s) 375, 532
BsuRI GGCC 2 cut(s) 91, 1060
BtrI CACGTC 1 cut(s) 108
BtsCI GGATG 2 cut(s) 297, 350
BtuMI TCGCGA 1 cut(s) 843
Cac8I GCNNGC 2 cut(s) 894, 955
CciI TCATGA 1 cut(s) 703
Cfr13I GGNCC 2 cut(s) 89, 341
CseI GACGC 2 cut(s) 222, 1021
Csp6I GTAC 2 cut(s) 322, 1011
CviAII CATG 5 cut(s) 174, 426, 704, 886, 954
CviJI RGCY 4 cut(s) 91, 629, 896, 1060
CviKI_1 RGCY 4 cut(s) 91, 629, 896, 1060
CviQI GTAC 2 cut(s) 322, 1011
DdeI CTNAG 2 cut(s) 625, 809
DpnI GATC 6 cut(s) 249, 276, 377, 534, 903, 1049
DpnII GATC 6 cut(s) 247, 274, 375, 532, 901, 1047
DraI TTTAAA 1 cut(s) 361
EaeI YGGCCR 1 cut(s) 1058
Eam1104I CTCTTC 1 cut(s) 388
EarI CTCTTC 1 cut(s) 388
EciI GGCGGA 1 cut(s) 189
Eco32I GATATC 1 cut(s) 295
Eco47I GGWCC 1 cut(s) 341
Eco57I CTGAAG 1 cut(s) 369
EcoO109I RGGNCCY 1 cut(s) 341
EcoRII CCWGG 2 cut(s) 300, 574
EcoRV GATATC 1 cut(s) 295
FaeI CATG 5 cut(s) 177, 429, 707, 889, 957
FalI AAGNNNNNCTT 2 cut(s) 906, 938
FaqI GGGAC 3 cut(s) 118, 671, 704
FatI CATG 5 cut(s) 173, 425, 703, 885, 953
FbaI TGATCA 1 cut(s) 274
Fnu4HI GCNGC 2 cut(s) 130, 457
FokI GGATG 2 cut(s) 284, 337
Fsp4HI GCNGC 2 cut(s) 130, 457
FspBI CTAG 1 cut(s) 929
GluI GCNGC 2 cut(s) 130, 457
GsuI CTGGAG 1 cut(s) 36
HaeIII GGCC 2 cut(s) 91, 1060
HgaI GACGC 2 cut(s) 222, 1021
Hin1I GRCGYC 3 cut(s) 646, 717, 1032
Hin1II CATG 5 cut(s) 177, 429, 707, 889, 957
HinfI GANTC 6 cut(s) 237, 407, 451, 691, 852, 878
HphI GGTGA 1 cut(s) 281
Hpy188I TCNGA 5 cut(s) 279, 388, 450, 827, 967
Hpy188III TCNNGA 7 cut(s) 53, 103, 509, 688, 704, 842, 929
Hpy99I CGWCG 1 cut(s) 216
HpyAV CCTTC 3 cut(s) 526, 631, 706
HpyCH4III ACNGT 1 cut(s) 1015
HpyCH4IV ACGT 4 cut(s) 107, 646, 682, 717
HpyCH4V TGCA 4 cut(s) 111, 168, 177, 957
HpyF10VI GCNNNNNNNGC 2 cut(s) 174, 462
HpyF3I CTNAG 2 cut(s) 625, 809
HpySE526I ACGT 4 cut(s) 107, 646, 682, 717
Hsp92I GRCGYC 3 cut(s) 646, 717, 1032
Hsp92II CATG 5 cut(s) 177, 429, 707, 889, 957
Ksp22I TGATCA 1 cut(s) 274
Kzo9I GATC 6 cut(s) 247, 274, 375, 532, 901, 1047
Lsp1109I GCAGC 2 cut(s) 116, 468
LweI GCATC 3 cut(s) 298, 502, 807
MaeI CTAG 1 cut(s) 929
MaeII ACGT 4 cut(s) 107, 646, 682, 717
MaeIII GTNAC 2 cut(s) 155, 428
MalI GATC 6 cut(s) 249, 276, 377, 534, 903, 1049
MboI GATC 6 cut(s) 247, 274, 375, 532, 901, 1047
MboII GAAGA 8 cut(s) 188, 275, 296, 370, 375, 874, 926, 1027
MfeI CAATTG 1 cut(s) 93
MflI RGATCY 2 cut(s) 375, 532
MhlI GDGCHC 2 cut(s) 425, 815
MlsI TGGCCA 1 cut(s) 1060
MluCI AATT 9 cut(s) 93, 185, 362, 593, 614, 654, 677, 746, 932
MluNI TGGCCA 1 cut(s) 1060
MlyI GAGTC 1 cut(s) 872
MmeI TCCRAC 1 cut(s) 510
MnlI CCTC 8 cut(s) 44, 60, 219, 455, 632, 635, 1022, 1080
Mox20I TGGCCA 1 cut(s) 1060
MscI TGGCCA 1 cut(s) 1060
MseI TTAA 3 cut(s) 360, 836, 992
Msp20I TGGCCA 1 cut(s) 1060
MspA1I CMGCKG 2 cut(s) 39, 459
MspR9I CCNGG 2 cut(s) 302, 576
MunI CAATTG 1 cut(s) 93
Mva1269I GAATGC 1 cut(s) 502
MvaI CCWGG 2 cut(s) 302, 576
MvnI CGCG 1 cut(s) 843
MwoI GCNNNNNNNGC 2 cut(s) 174, 462
NdeII GATC 6 cut(s) 247, 274, 375, 532, 901, 1047
NlaIII CATG 5 cut(s) 177, 429, 707, 889, 957
NlaIV GGNNCC 1 cut(s) 534
NruI TCGCGA 1 cut(s) 843
NspI RCATGY 2 cut(s) 429, 957
PaeI GCATGC 1 cut(s) 957
PagI TCATGA 1 cut(s) 703
PciI ACATGT 1 cut(s) 425
PctI GAATGC 1 cut(s) 502
PfeI GAWTC 5 cut(s) 237, 407, 451, 691, 852
PkrI GCNGC 2 cut(s) 131, 458
PleI GAGTC 1 cut(s) 872
PpsI GAGTC 1 cut(s) 872
Ppu21I YACGTR 1 cut(s) 683
PpuMI RGGWCCY 1 cut(s) 341
PscI ACATGT 1 cut(s) 425
PsiI TTATAA 2 cut(s) 258, 474
Psp5II RGGWCCY 1 cut(s) 341
Psp6I CCWGG 2 cut(s) 300, 574
PspGI CCWGG 2 cut(s) 300, 574
PspN4I GGNNCC 1 cut(s) 534
PspPI GGNCC 2 cut(s) 89, 341
PspPPI RGGWCCY 1 cut(s) 341
PsuI RGATCY 2 cut(s) 375, 532
RruI TCGCGA 1 cut(s) 843
RsaI GTAC 2 cut(s) 323, 1012
RsaNI GTAC 2 cut(s) 322, 1011
SaqAI TTAA 3 cut(s) 360, 836, 992
SatI GCNGC 2 cut(s) 130, 457
Sau3AI GATC 6 cut(s) 247, 274, 375, 532, 901, 1047
Sau96I GGNCC 2 cut(s) 89, 341
SchI GAGTC 1 cut(s) 872
ScrFI CCNGG 2 cut(s) 302, 576
SduI GDGCHC 2 cut(s) 425, 815
SfaNI GCATC 3 cut(s) 298, 502, 807
SinI GGWCC 1 cut(s) 341
SmiI ATTTAAAT 1 cut(s) 361
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
SphI GCATGC 1 cut(s) 957
Sse9I AATT 9 cut(s) 93, 185, 362, 593, 614, 654, 677, 746, 932
SsiI CCGC 4 cut(s) 37, 200, 459, 636
SspI AATATT 1 cut(s) 961
SspMI CTAG 1 cut(s) 929
StyD4I CCNGG 2 cut(s) 300, 574
SwaI ATTTAAAT 1 cut(s) 361
TaaI ACNGT 1 cut(s) 1015
TaiI ACGT 4 cut(s) 110, 649, 685, 720
TaqI TCGA 5 cut(s) 211, 410, 548, 860, 900
TasI AATT 9 cut(s) 93, 185, 362, 593, 614, 654, 677, 746, 932
TfiI GAWTC 5 cut(s) 237, 407, 451, 691, 852
Tru1I TTAA 3 cut(s) 360, 836, 992
Tru9I TTAA 3 cut(s) 360, 836, 992
TseI GCWGC 2 cut(s) 129, 456
TspDTI ATGAA 8 cut(s) 49, 182, 229, 508, 572, 582, 720, 927
VpaK11BI GGWCC 1 cut(s) 341
XapI RAATTY 2 cut(s) 362, 654
XbaI TCTAGA 1 cut(s) 928
XceI RCATGY 2 cut(s) 429, 957
XspI CTAG 1 cut(s) 929
ZraI GACGTC 2 cut(s) 647, 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.