Rh6BG523300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000270
Physical Location & Seq
Reverse (-)
71585248 .. 71585529
282 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG523300.1

Sequence Viewer

Length: 282 bp
ATGACTTGGTTTTATGCTGCGCAACCAAGGATGATCAACGTCATTACTACCTCTGCAATCCATACACCAGACAATGGGTTCCTCTTCCTCCCACCCCTCGGCCGGGTCTACCACCGCGACGTGCTTGTGGCCATTGTCTGTGATCCATATTATAAGTACTCAAATGATGATCATAATGGAGATGAAGAACAAGGGACTGGTACTACTACTAGAATGAATTCTTTCATCCTTAATGCTGAGTATAAGTGGAAGGTTGTGCCATTTCGAGATCTTCTTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

93

Amino Acids

10.81

Weight (kDa)

5.8

Isoelectric Point (pI)

29.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 153
Acc16I TGCGCA 1 cut(s) 21
AccB7I CCANNNNNTGG 1 cut(s) 74
AccI GTMKAC 1 cut(s) 108
AccII CGCG 1 cut(s) 117
AciI CCGC 1 cut(s) 115
AclWI GGATC 1 cut(s) 137
AcoI YGGCCR 2 cut(s) 100, 129
AcsI RAATTY 1 cut(s) 217
AfaI GTAC 2 cut(s) 158, 202
AfiI CCNNNNNNNGG 4 cut(s) 74, 98, 102, 103
AjiI CACGTC 1 cut(s) 121
AlwI GGATC 1 cut(s) 137
AoxI GGCC 2 cut(s) 100, 129
ApeKI GCWGC 1 cut(s) 17
ApoI RAATTY 1 cut(s) 217
Asp700I GAANNNNTTC 2 cut(s) 217, 221
AspLEI GCGC 1 cut(s) 22
AsuC2I CCSGG 1 cut(s) 104
BalI TGGCCA 1 cut(s) 131
BbvI GCAGC 1 cut(s) 4
BclI TGATCA 2 cut(s) 33, 169
BcnI CCSGG 1 cut(s) 104
BfaI CTAG 1 cut(s) 210
BglII AGATCT 1 cut(s) 268
BisI GCNGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 19
BmcAI AGTACT 1 cut(s) 158
Bme1390I CCNGG 1 cut(s) 104
BmgBI CACGTC 1 cut(s) 121
BmiI GGNNCC 1 cut(s) 80
BmrFI CCNGG 1 cut(s) 104
BpuMI CCSGG 1 cut(s) 104
BsaJI CCNNGG 2 cut(s) 26, 97
Bsc4I CCNNNNNNNGG 4 cut(s) 74, 98, 102, 103
Bse1I ACTGG 1 cut(s) 202
BseDI CCNNGG 2 cut(s) 26, 97
BseGI GGATG 2 cut(s) 36, 225
BseLI CCNNNNNNNGG 4 cut(s) 74, 98, 102, 103
BseMII CTCAG 1 cut(s) 228
BseNI ACTGG 1 cut(s) 202
BseX3I CGGCCG 1 cut(s) 100
BseXI GCAGC 1 cut(s) 4
Bsh1236I CGCG 1 cut(s) 117
Bsh1285I CGRYCG 1 cut(s) 103
BshFI GGCC 2 cut(s) 102, 131
BsiEI CGRYCG 1 cut(s) 103
BsiSI CCGG 1 cut(s) 103
BslFI GGGAC 1 cut(s) 208
BslI CCNNNNNNNGG 4 cut(s) 74, 98, 102, 103
BsmFI GGGAC 1 cut(s) 208
BsnI GGCC 2 cut(s) 102, 131
Bsp143I GATC 4 cut(s) 33, 142, 169, 268
BspACI CCGC 1 cut(s) 115
BspANI GGCC 2 cut(s) 102, 131
BspCNI CTCAG 1 cut(s) 229
BspFNI CGCG 1 cut(s) 117
BspLI GGNNCC 1 cut(s) 80
BspPI GGATC 1 cut(s) 137
BsrI ACTGG 1 cut(s) 202
BssECI CCNNGG 2 cut(s) 26, 97
BssMI GATC 4 cut(s) 33, 142, 169, 268
BssT1I CCWWGG 1 cut(s) 26
Bst6I CTCTTC 1 cut(s) 89
BstDEI CTNAG 1 cut(s) 237
BstF5I GGATG 2 cut(s) 36, 225
BstFNI CGCG 1 cut(s) 117
BstHHI GCGC 1 cut(s) 22
BstKTI GATC 4 cut(s) 36, 145, 172, 271
BstMBI GATC 4 cut(s) 33, 142, 169, 268
BstMCI CGRYCG 1 cut(s) 103
BstSCI CCNGG 1 cut(s) 102
BstUI CGCG 1 cut(s) 117
BstV1I GCAGC 1 cut(s) 4
BstX2I RGATCY 1 cut(s) 268
BstYI RGATCY 1 cut(s) 268
BstZI CGGCCG 1 cut(s) 100
BsuRI GGCC 2 cut(s) 102, 131
BtrI CACGTC 1 cut(s) 121
BtsCI GGATG 2 cut(s) 36, 225
CfoI GCGC 1 cut(s) 22
Csp6I GTAC 2 cut(s) 157, 201
CviJI RGCY 2 cut(s) 102, 131
CviKI_1 RGCY 2 cut(s) 102, 131
CviQI GTAC 2 cut(s) 157, 201
DdeI CTNAG 1 cut(s) 237
DpnI GATC 4 cut(s) 35, 144, 171, 270
DpnII GATC 4 cut(s) 33, 142, 169, 268
EaeI YGGCCR 2 cut(s) 100, 129
EagI CGGCCG 1 cut(s) 100
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
EclXI CGGCCG 1 cut(s) 100
Eco130I CCWWGG 1 cut(s) 26
Eco52I CGGCCG 1 cut(s) 100
EcoRI GAATTC 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 26
ErhI CCWWGG 1 cut(s) 26
FaiI YATR 6 cut(s) 15, 63, 148, 153, 174, 243
FaqI GGGAC 1 cut(s) 208
FbaI TGATCA 2 cut(s) 33, 169
FblI GTMKAC 1 cut(s) 108
Fnu4HI GCNGC 1 cut(s) 18
FokI GGATG 2 cut(s) 43, 212
Fsp4HI GCNGC 1 cut(s) 18
FspBI CTAG 1 cut(s) 210
FspI TGCGCA 1 cut(s) 21
GlaI GCGC 1 cut(s) 21
GluI GCNGC 1 cut(s) 18
HaeIII GGCC 2 cut(s) 102, 131
HapII CCGG 1 cut(s) 103
HhaI GCGC 1 cut(s) 22
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HpaII CCGG 1 cut(s) 103
Hpy166II GTNNAC 1 cut(s) 109
Hpy188I TCNGA 1 cut(s) 281
Hpy188III TCNNGA 1 cut(s) 266
Hpy8I GTNNAC 1 cut(s) 109
Hpy99I CGWCG 1 cut(s) 122
HpyAV CCTTC 1 cut(s) 244
HpyCH4IV ACGT 2 cut(s) 39, 120
HpyCH4V TGCA 1 cut(s) 56
HpyF3I CTNAG 1 cut(s) 237
HpySE526I ACGT 2 cut(s) 39, 120
HspAI GCGC 1 cut(s) 20
Ksp22I TGATCA 2 cut(s) 33, 169
Kzo9I GATC 4 cut(s) 33, 142, 169, 268
LpnPI CCDG 3 cut(s) 81, 116, 183
Lsp1109I GCAGC 1 cut(s) 4
MaeI CTAG 1 cut(s) 210
MaeII ACGT 2 cut(s) 39, 120
MalI GATC 4 cut(s) 35, 144, 171, 270
MboI GATC 4 cut(s) 33, 142, 169, 268
MboII GAAGA 3 cut(s) 76, 197, 263
MflI RGATCY 1 cut(s) 268
MlsI TGGCCA 1 cut(s) 131
MluCI AATT 1 cut(s) 217
MluNI TGGCCA 1 cut(s) 131
MnlI CCTC 4 cut(s) 61, 92, 98, 107
Mox20I TGGCCA 1 cut(s) 131
MroXI GAANNNNTTC 2 cut(s) 217, 221
MscI TGGCCA 1 cut(s) 131
MseI TTAA 1 cut(s) 231
Msp20I TGGCCA 1 cut(s) 131
MspI CCGG 1 cut(s) 103
MspR9I CCNGG 1 cut(s) 104
MvnI CGCG 1 cut(s) 117
NciI CCSGG 1 cut(s) 104
NdeII GATC 4 cut(s) 33, 142, 169, 268
NlaIV GGNNCC 1 cut(s) 80
NmeAIII GCCGAG 1 cut(s) 78
NsbI TGCGCA 1 cut(s) 21
PdmI GAANNNNTTC 2 cut(s) 217, 221
PflMI CCANNNNNTGG 1 cut(s) 74
PkrI GCNGC 1 cut(s) 19
PsiI TTATAA 1 cut(s) 153
PspN4I GGNNCC 1 cut(s) 80
PsuI RGATCY 1 cut(s) 268
RsaI GTAC 2 cut(s) 158, 202
RsaNI GTAC 2 cut(s) 157, 201
SaqAI TTAA 1 cut(s) 231
SatI GCNGC 1 cut(s) 18
Sau3AI GATC 4 cut(s) 33, 142, 169, 268
ScaI AGTACT 1 cut(s) 158
ScrFI CCNGG 1 cut(s) 104
SetI ASST 4 cut(s) 42, 53, 123, 255
Sse9I AATT 1 cut(s) 217
SsiI CCGC 1 cut(s) 115
SspMI CTAG 1 cut(s) 210
StyD4I CCNGG 1 cut(s) 102
StyI CCWWGG 1 cut(s) 26
TaiI ACGT 2 cut(s) 42, 123
TaqI TCGA 1 cut(s) 265
TasI AATT 1 cut(s) 217
TatI WGTACW 1 cut(s) 156
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TseI GCWGC 1 cut(s) 17
TspDTI ATGAA 3 cut(s) 198, 214, 230
Van91I CCANNNNNTGG 1 cut(s) 74
XapI RAATTY 1 cut(s) 217
XmiI GTMKAC 1 cut(s) 108
XmnI GAANNNNTTC 2 cut(s) 217, 221
XspI CTAG 1 cut(s) 210
ZrmI AGTACT 1 cut(s) 158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.