Rh3AG023000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0000270
Physical Location & Seq
Forward (+)
1549331 .. 1550053
723 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG023000.1

Sequence Viewer

Length: 723 bp
ATGAATTTCCTTCCACCTTTTCGAGCTAATGAGCAACCACAATTACTATATAATGAACCGATTGTGGAAGCAACTTTCAATGACTTGGTCTTGTGCTGCGCAACCGAGCATTATCAACGTGACTACTACATCTGCAATCCAATCACCAAGCAATGGGTTGCTCTCCCTCCCACCCCTCGAGCTCCCTATTCGAAGGTGCAGGTGGGATTCATTTGTGATCCCTACTATGATAATGGAATTAGTACCGGAAGTAGTAGTAGCTCTATGATGAAGCTTAATACTGGATATAGGTGCAGGGTTGTGCGAATCCTCCCAGATGAAAGATTTCAACCAGGATTGGGTTTTTATGTGGAGATCTTCTCTTCTGAGACAGGTGAATGGAGAGAGTATCAATTACCTAATCTAATAGAGTTAGAAAAGCTCGGTTGGTTCATTAAATGGCAGCCTGGCGTTGCTTTCAATGGCAAGTTATATTGGTACAATGATGGTAGCTTTACTTTTGAGTTGGATCCGTTCAATATTAGTAGTGGTGGTGATATTATTAATAACAAGCGTCGTTTCAATGGGATGAAATCTGCTGTCCCCAAAAATCATGTGCCAAACCTGTCTCTATATTCTGTTTTTGGGACAGCAGATTTCCTTCCCGTTTCAATGTACAACCGAGACTATGCTTCCATTTATGTGTGTGCCAAGGGCGTTTGCGAATGTGTCCATTCTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

240

Amino Acids

27.51

Weight (kDa)

5.95

Isoelectric Point (pI)

41.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
b-prop_At3g26010-like PF24750 21 - 163 1.3e-09 F-box protein At3g26010-like, beta-propeller
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 190
Acc16I TGCGCA 1 cut(s) 100
Acc36I ACCTGC 1 cut(s) 190
AccB7I CCANNNNNTGG 1 cut(s) 153
AclWI GGATC 3 cut(s) 212, 503, 516
AcsI RAATTY 1 cut(s) 4
AfaI GTAC 3 cut(s) 244, 479, 656
AfiI CCNNNNNNNGG 2 cut(s) 153, 338
AgsI TTSAA 6 cut(s) 79, 329, 460, 517, 562, 651
AjnI CCWGG 2 cut(s) 331, 445
AluBI AGCT 6 cut(s) 26, 182, 261, 274, 421, 492
AluI AGCT 6 cut(s) 26, 182, 261, 274, 421, 492
Alw21I GWGCWC 1 cut(s) 184
Alw26I GTCTC 3 cut(s) 362, 612, 657
AlwI GGATC 3 cut(s) 212, 503, 516
Ama87I CYCGRG 1 cut(s) 177
ApeKI GCWGC 2 cut(s) 96, 442
ApoI RAATTY 1 cut(s) 4
AseI ATTAAT 1 cut(s) 543
Asp700I GAANNNNTTC 1 cut(s) 324
AspLEI GCGC 1 cut(s) 101
AsuHPI GGTGA 3 cut(s) 136, 386, 545
AsuII TTCGAA 1 cut(s) 191
AvaI CYCGRG 1 cut(s) 177
BamHI GGATCC 1 cut(s) 508
BanII GRGCYC 1 cut(s) 184
Bbv12I GWGCWC 1 cut(s) 184
BbvI GCAGC 2 cut(s) 83, 454
BccI CCATC 1 cut(s) 479
BciT130I CCWGG 2 cut(s) 333, 447
BcoDI GTCTC 3 cut(s) 362, 612, 657
BfmI CTRYAG 1 cut(s) 719
BfuAI ACCTGC 1 cut(s) 190
BglII AGATCT 1 cut(s) 354
BisI GCNGC 2 cut(s) 97, 443
BlsI GCNGC 2 cut(s) 98, 444
Bme1390I CCNGG 2 cut(s) 333, 447
BmeT110I CYCGRG 1 cut(s) 177
BmiI GGNNCC 1 cut(s) 510
BmrFI CCNGG 2 cut(s) 333, 447
BplI GAGNNNNNCTC 2 cut(s) 344, 376
Bpu14I TTCGAA 1 cut(s) 191
BsaJI CCNNGG 1 cut(s) 690
BsaWI WCCGGW 1 cut(s) 245
Bsc4I CCNNNNNNNGG 2 cut(s) 153, 338
Bse1I ACTGG 1 cut(s) 286
Bse3DI GCAATG 1 cut(s) 158
BseBI CCWGG 2 cut(s) 333, 447
BseDI CCNNGG 1 cut(s) 690
BseGI GGATG 1 cut(s) 573
BseLI CCNNNNNNNGG 2 cut(s) 153, 338
BseMI GCAATG 1 cut(s) 158
BseMII CTCAG 1 cut(s) 357
BseNI ACTGG 1 cut(s) 286
BseXI GCAGC 2 cut(s) 83, 454
BsgI GTGCAG 2 cut(s) 218, 313
BsiHKAI GWGCWC 1 cut(s) 184
BsiHKCI CYCGRG 1 cut(s) 177
BsiSI CCGG 1 cut(s) 246
BslFI GGGAC 2 cut(s) 566, 640
BslI CCNNNNNNNGG 2 cut(s) 153, 338
BsmAI GTCTC 3 cut(s) 362, 612, 657
BsmFI GGGAC 2 cut(s) 566, 640
BsoBI CYCGRG 1 cut(s) 177
Bsp119I TTCGAA 1 cut(s) 191
Bsp1286I GDGCHC 1 cut(s) 184
Bsp1407I TGTACA 1 cut(s) 654
Bsp143I GATC 3 cut(s) 217, 354, 508
BspCNI CTCAG 1 cut(s) 358
BspLI GGNNCC 1 cut(s) 510
BspMI ACCTGC 1 cut(s) 190
BspPI GGATC 3 cut(s) 212, 503, 516
BspT104I TTCGAA 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 158
BsrGI TGTACA 1 cut(s) 654
BsrI ACTGG 1 cut(s) 286
BssECI CCNNGG 1 cut(s) 690
BssMI GATC 3 cut(s) 217, 354, 508
BssT1I CCWWGG 1 cut(s) 690
Bst2UI CCWGG 2 cut(s) 333, 447
Bst6I CTCTTC 1 cut(s) 367
BstAUI TGTACA 1 cut(s) 654
BstBI TTCGAA 1 cut(s) 191
BstDEI CTNAG 1 cut(s) 366
BstF5I GGATG 1 cut(s) 573
BstHHI GCGC 1 cut(s) 101
BstKTI GATC 3 cut(s) 220, 357, 511
BstMAI GTCTC 3 cut(s) 362, 612, 657
BstMBI GATC 3 cut(s) 217, 354, 508
BstNI CCWGG 2 cut(s) 333, 447
BstSCI CCNGG 2 cut(s) 331, 445
BstSFI CTRYAG 1 cut(s) 719
BstV1I GCAGC 2 cut(s) 83, 454
BstX2I RGATCY 2 cut(s) 354, 508
BstYI RGATCY 2 cut(s) 354, 508
BtsCI GGATG 1 cut(s) 573
BveI ACCTGC 1 cut(s) 190
CfoI GCGC 1 cut(s) 101
CseI GACGC 1 cut(s) 542
Csp6I GTAC 3 cut(s) 243, 478, 655
CviAII CATG 1 cut(s) 593
CviJI RGCY 7 cut(s) 26, 182, 261, 274, 421, 445, 492
CviKI_1 RGCY 7 cut(s) 26, 182, 261, 274, 421, 445, 492
CviQI GTAC 3 cut(s) 243, 478, 655
DdeI CTNAG 1 cut(s) 366
DpnI GATC 3 cut(s) 219, 356, 510
DpnII GATC 3 cut(s) 217, 354, 508
Eam1104I CTCTTC 1 cut(s) 367
EarI CTCTTC 1 cut(s) 367
Ecl136II GAGCTC 1 cut(s) 182
Eco130I CCWWGG 1 cut(s) 690
Eco24I GRGCYC 1 cut(s) 184
Eco53kI GAGCTC 1 cut(s) 182
Eco88I CYCGRG 1 cut(s) 177
EcoICRI GAGCTC 1 cut(s) 182
EcoRII CCWGG 2 cut(s) 331, 445
EcoT14I CCWWGG 1 cut(s) 690
EcoT38I GRGCYC 1 cut(s) 184
ErhI CCWWGG 1 cut(s) 690
FaeI CATG 1 cut(s) 596
FaqI GGGAC 2 cut(s) 566, 640
FatI CATG 1 cut(s) 592
Fnu4HI GCNGC 2 cut(s) 97, 443
FokI GGATG 1 cut(s) 580
FriOI GRGCYC 1 cut(s) 184
Fsp4HI GCNGC 2 cut(s) 97, 443
FspI TGCGCA 1 cut(s) 100
GlaI GCGC 1 cut(s) 100
GluI GCNGC 2 cut(s) 97, 443
HapII CCGG 1 cut(s) 246
HgaI GACGC 1 cut(s) 542
HhaI GCGC 1 cut(s) 101
Hin1II CATG 1 cut(s) 596
Hin6I GCGC 1 cut(s) 99
HinP1I GCGC 1 cut(s) 99
HindIII AAGCTT 1 cut(s) 272
HinfI GANTC 2 cut(s) 207, 306
HpaII CCGG 1 cut(s) 246
HphI GGTGA 3 cut(s) 136, 386, 545
Hpy188I TCNGA 1 cut(s) 367
Hpy99I CGWCG 1 cut(s) 558
HpyAV CCTTC 3 cut(s) 20, 187, 650
HpyCH4IV ACGT 1 cut(s) 118
HpyCH4V TGCA 3 cut(s) 135, 199, 294
HpyF3I CTNAG 1 cut(s) 366
HpySE526I ACGT 1 cut(s) 118
Hsp92II CATG 1 cut(s) 596
HspAI GCGC 1 cut(s) 99
Kzo9I GATC 3 cut(s) 217, 354, 508
LmnI GCTCC 1 cut(s) 187
Lsp1109I GCAGC 2 cut(s) 83, 454
MaeII ACGT 1 cut(s) 118
MaeIII GTNAC 1 cut(s) 119
MalI GATC 3 cut(s) 219, 356, 510
MboI GATC 3 cut(s) 217, 354, 508
MboII GAAGA 2 cut(s) 349, 354
MflI RGATCY 2 cut(s) 354, 508
MhlI GDGCHC 1 cut(s) 184
MluCI AATT 4 cut(s) 4, 41, 237, 392
MmeI TCCRAC 1 cut(s) 486
MnlI CCTC 3 cut(s) 177, 186, 320
MroXI GAANNNNTTC 1 cut(s) 324
MseI TTAA 3 cut(s) 276, 435, 543
MslI CAYNNNNRTG 1 cut(s) 680
MspI CCGG 1 cut(s) 246
MspR9I CCNGG 2 cut(s) 333, 447
MvaI CCWGG 2 cut(s) 333, 447
NdeII GATC 3 cut(s) 217, 354, 508
NlaIII CATG 1 cut(s) 596
NlaIV GGNNCC 1 cut(s) 510
NmuCI GTSAC 1 cut(s) 119
NsbI TGCGCA 1 cut(s) 100
NspV TTCGAA 1 cut(s) 191
PaeR7I CTCGAG 1 cut(s) 177
PaqCI CACCTGC 1 cut(s) 190
PdmI GAANNNNTTC 1 cut(s) 324
PfeI GAWTC 2 cut(s) 207, 306
PflFI GACNNNGTC 1 cut(s) 86
PflMI CCANNNNNTGG 1 cut(s) 153
PkrI GCNGC 2 cut(s) 98, 444
PshBI ATTAAT 1 cut(s) 543
Psp124BI GAGCTC 1 cut(s) 184
Psp6I CCWGG 2 cut(s) 331, 445
PspGI CCWGG 2 cut(s) 331, 445
PspN4I GGNNCC 1 cut(s) 510
PspXI VCTCGAGB 1 cut(s) 177
PsuI RGATCY 2 cut(s) 354, 508
PsyI GACNNNGTC 1 cut(s) 86
RsaI GTAC 3 cut(s) 244, 479, 656
RsaNI GTAC 3 cut(s) 243, 478, 655
RseI CAYNNNNRTG 1 cut(s) 680
SacI GAGCTC 1 cut(s) 184
SaqAI TTAA 3 cut(s) 276, 435, 543
SatI GCNGC 2 cut(s) 97, 443
Sau3AI GATC 3 cut(s) 217, 354, 508
ScrFI CCNGG 2 cut(s) 333, 447
SduI GDGCHC 1 cut(s) 184
SfcI CTRYAG 1 cut(s) 719
Sfr274I CTCGAG 1 cut(s) 177
SfuI TTCGAA 1 cut(s) 191
SlaI CTCGAG 1 cut(s) 177
SmiMI CAYNNNNRTG 1 cut(s) 680
SmlI CTYRAG 1 cut(s) 177
SmoI CTYRAG 1 cut(s) 177
Sse9I AATT 4 cut(s) 4, 41, 237, 392
SspI AATATT 1 cut(s) 520
SstI GAGCTC 1 cut(s) 184
StyD4I CCNGG 2 cut(s) 331, 445
StyI CCWWGG 1 cut(s) 690
TaiI ACGT 1 cut(s) 121
TaqI TCGA 3 cut(s) 22, 178, 191
TasI AATT 4 cut(s) 4, 41, 237, 392
TatI WGTACW 1 cut(s) 654
TfiI GAWTC 2 cut(s) 207, 306
Tru1I TTAA 3 cut(s) 276, 435, 543
Tru9I TTAA 3 cut(s) 276, 435, 543
TseFI GTSAC 1 cut(s) 119
TseI GCWGC 2 cut(s) 96, 442
Tsp45I GTSAC 1 cut(s) 119
TspDTI ATGAA 7 cut(s) 17, 69, 199, 284, 333, 421, 584
TspGWI ACGGA 1 cut(s) 501
Tth111I GACNNNGTC 1 cut(s) 86
Van91I CCANNNNNTGG 1 cut(s) 153
VspI ATTAAT 1 cut(s) 543
XapI RAATTY 1 cut(s) 4
XhoI CTCGAG 1 cut(s) 177
XmnI GAANNNNTTC 1 cut(s) 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.