RLG00000020423

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000270
Physical Location & Seq
Forward (+)
64832142 .. 64832984
843 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000020423

Sequence Viewer

Length: 519 bp
ATGCACGAGTGGGCTTGCATTTGCGATCCCTACTATATCTACGACAGTTCTTCTCCAGTCGTCGAGGAGCTTAATGCTGATTATAGGTGCAGGGTTGTTCGATTGCTTCCAAAGTTGCGGATGGAGATATTCTCTTCTGAGACGGGTCAATGGAGAGAAATGATGTTATGCCCGACAGTTCTTGGAGATATATATGAGCTAAAGCCAAGTTTCTTCAAACAAATTGTGACTGCGGGCTTTGCTTACAATGGAAAGTTGTATCGGTGCGAGATGATTTCAAGTTGCGAAGACCCCATCATTGCTGCCTTGGAAGAAAGTAGGGAGGAGGTGCTAGGTTTCCACCCAAACAATAAGGATATCTTGTATATATCTGCCTTTGCCAAAGTCGTCATATGCAACATTCGTTCAAAAAAGTTAGAGATGCTTGGAAAGAGTCGGCTTCGCAATGATGATACTCCCATGGATTTCCACCAATTTGAGCTCCAATCCTGGCCTACACCAGTTCCTAAAATCTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

173

Amino Acids

20.06

Weight (kDa)

5.45

Isoelectric Point (pI)

49.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 118, 233
AclWI GGATC 1 cut(s) 20
AgsI TTSAA 3 cut(s) 217, 279, 408
AjnI CCWGG 1 cut(s) 488
AluBI AGCT 3 cut(s) 70, 199, 481
AluI AGCT 3 cut(s) 70, 199, 481
Alw21I GWGCWC 1 cut(s) 483
Alw26I GTCTC 1 cut(s) 134
AlwI GGATC 1 cut(s) 20
AoxI GGCC 1 cut(s) 491
ApeKI GCWGC 1 cut(s) 302
BanII GRGCYC 1 cut(s) 483
BauI CACGAG 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 294
Bbv12I GWGCWC 1 cut(s) 483
BbvI GCAGC 1 cut(s) 289
BccI CCATC 2 cut(s) 115, 302
BciT130I CCWGG 1 cut(s) 490
BcoDI GTCTC 1 cut(s) 134
BfaI CTAG 1 cut(s) 332
BisI GCNGC 1 cut(s) 303
BlsI GCNGC 1 cut(s) 304
Bme1390I CCNGG 1 cut(s) 490
BmrFI CCNGG 1 cut(s) 490
BmsI GCATC 1 cut(s) 411
BpiI GAAGAC 1 cut(s) 294
BplI GAGNNNNNCTC 2 cut(s) 116, 148
BpmI CTGGAG 1 cut(s) 39
BsaJI CCNNGG 2 cut(s) 306, 459
Bse1I ACTGG 2 cut(s) 56, 500
Bse3DI GCAATG 2 cut(s) 297, 451
BseBI CCWGG 1 cut(s) 490
BseDI CCNNGG 2 cut(s) 306, 459
BseGI GGATG 1 cut(s) 126
BseMI GCAATG 2 cut(s) 297, 451
BseMII CTCAG 1 cut(s) 129
BseNI ACTGG 2 cut(s) 56, 500
BseRI GAGGAG 2 cut(s) 80, 338
BseXI GCAGC 1 cut(s) 289
BsgI GTGCAG 1 cut(s) 109
BshFI GGCC 1 cut(s) 493
BsiHKAI GWGCWC 1 cut(s) 483
BsmAI GTCTC 1 cut(s) 134
BsmBI CGTCTC 1 cut(s) 134
BsnI GGCC 1 cut(s) 493
Bsp1286I GDGCHC 1 cut(s) 483
Bsp143I GATC 1 cut(s) 25
Bsp19I CCATGG 1 cut(s) 459
BspACI CCGC 2 cut(s) 118, 233
BspANI GGCC 1 cut(s) 493
BspCNI CTCAG 1 cut(s) 130
BspPI GGATC 1 cut(s) 20
BsrDI GCAATG 2 cut(s) 297, 451
BsrI ACTGG 2 cut(s) 56, 500
BssECI CCNNGG 2 cut(s) 306, 459
BssMI GATC 1 cut(s) 25
BssSI CACGAG 1 cut(s) 5
BssT1I CCWWGG 2 cut(s) 306, 459
Bst2BI CACGAG 1 cut(s) 5
Bst2UI CCWGG 1 cut(s) 490
Bst4CI ACNGT 2 cut(s) 47, 178
Bst6I CTCTTC 1 cut(s) 139
BstC8I GCNNGC 2 cut(s) 16, 235
BstDEI CTNAG 1 cut(s) 138
BstDSI CCRYGG 1 cut(s) 459
BstF5I GGATG 1 cut(s) 126
BstKTI GATC 1 cut(s) 28
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 1 cut(s) 25
BstMWI GCNNNNNNNGC 1 cut(s) 239
BstNI CCWGG 1 cut(s) 490
BstSCI CCNGG 1 cut(s) 488
BstV1I GCAGC 1 cut(s) 289
BstV2I GAAGAC 1 cut(s) 294
BsuRI GGCC 1 cut(s) 493
BtgI CCRYGG 1 cut(s) 459
BtsCI GGATG 1 cut(s) 126
Cac8I GCNNGC 2 cut(s) 16, 235
CviAII CATG 1 cut(s) 460
CviJI RGCY 8 cut(s) 14, 70, 199, 205, 237, 439, 481, 493
CviKI_1 RGCY 8 cut(s) 14, 70, 199, 205, 237, 439, 481, 493
DdeI CTNAG 1 cut(s) 138
DpnI GATC 1 cut(s) 27
DpnII GATC 1 cut(s) 25
Eam1104I CTCTTC 1 cut(s) 139
EarI CTCTTC 1 cut(s) 139
Ecl136II GAGCTC 1 cut(s) 481
Eco130I CCWWGG 2 cut(s) 306, 459
Eco24I GRGCYC 1 cut(s) 483
Eco32I GATATC 1 cut(s) 358
Eco53kI GAGCTC 1 cut(s) 481
EcoICRI GAGCTC 1 cut(s) 481
EcoRII CCWGG 1 cut(s) 488
EcoRV GATATC 1 cut(s) 358
EcoT14I CCWWGG 2 cut(s) 306, 459
EcoT38I GRGCYC 1 cut(s) 483
ErhI CCWWGG 2 cut(s) 306, 459
Esp3I CGTCTC 1 cut(s) 134
FaeI CATG 1 cut(s) 463
FalI AAGNNNNNCTT 2 cut(s) 344, 376
FatI CATG 1 cut(s) 459
FauI CCCGC 1 cut(s) 226
FauNDI CATATG 1 cut(s) 392
Fnu4HI GCNGC 1 cut(s) 303
FokI GGATG 1 cut(s) 133
FriOI GRGCYC 1 cut(s) 483
Fsp4HI GCNGC 1 cut(s) 303
FspBI CTAG 1 cut(s) 332
GluI GCNGC 1 cut(s) 303
GsuI CTGGAG 1 cut(s) 39
HaeIII GGCC 1 cut(s) 493
Hin1II CATG 1 cut(s) 463
HinfI GANTC 1 cut(s) 433
Hpy188I TCNGA 1 cut(s) 139
Hpy99I CGWCG 1 cut(s) 65
HpyCH4III ACNGT 2 cut(s) 47, 178
HpyCH4V TGCA 4 cut(s) 4, 18, 90, 396
HpyF10VI GCNNNNNNNGC 1 cut(s) 239
HpyF3I CTNAG 1 cut(s) 138
Hsp92II CATG 1 cut(s) 463
Kzo9I GATC 1 cut(s) 25
LmnI GCTCC 2 cut(s) 67, 486
LpnPI CCDG 5 cut(s) 69, 76, 475, 502, 513
Lsp1109I GCAGC 1 cut(s) 289
LweI GCATC 1 cut(s) 411
MaeI CTAG 1 cut(s) 332
MaeIII GTNAC 1 cut(s) 226
MalI GATC 1 cut(s) 27
MboI GATC 1 cut(s) 25
MboII GAAGA 5 cut(s) 42, 126, 205, 299, 323
MhlI GDGCHC 1 cut(s) 483
MluCI AATT 2 cut(s) 222, 473
MlyI GAGTC 1 cut(s) 442
MnlI CCTC 3 cut(s) 58, 316, 319
MseI TTAA 1 cut(s) 72
MspR9I CCNGG 1 cut(s) 490
MvaI CCWGG 1 cut(s) 490
MwoI GCNNNNNNNGC 1 cut(s) 239
NcoI CCATGG 1 cut(s) 459
NdeI CATATG 1 cut(s) 392
NdeII GATC 1 cut(s) 25
NlaIII CATG 1 cut(s) 463
NmuCI GTSAC 1 cut(s) 226
PkrI GCNGC 1 cut(s) 304
PleI GAGTC 1 cut(s) 441
PpsI GAGTC 1 cut(s) 441
Psp124BI GAGCTC 1 cut(s) 483
Psp6I CCWGG 1 cut(s) 488
PspGI CCWGG 1 cut(s) 488
SacI GAGCTC 1 cut(s) 483
SaqAI TTAA 1 cut(s) 72
SatI GCNGC 1 cut(s) 303
Sau3AI GATC 1 cut(s) 25
SchI GAGTC 1 cut(s) 442
ScrFI CCNGG 1 cut(s) 490
SduI GDGCHC 1 cut(s) 483
SetI ASST 6 cut(s) 72, 89, 201, 330, 337, 483
SfaNI GCATC 1 cut(s) 411
Sse9I AATT 2 cut(s) 222, 473
SsiI CCGC 2 cut(s) 118, 233
SspMI CTAG 1 cut(s) 332
SstI GAGCTC 1 cut(s) 483
StyD4I CCNGG 1 cut(s) 488
StyI CCWWGG 2 cut(s) 306, 459
TaaI ACNGT 2 cut(s) 47, 178
TaqI TCGA 2 cut(s) 63, 100
TasI AATT 2 cut(s) 222, 473
Tru1I TTAA 1 cut(s) 72
Tru9I TTAA 1 cut(s) 72
TseFI GTSAC 1 cut(s) 226
TseI GCWGC 1 cut(s) 302
Tsp45I GTSAC 1 cut(s) 226
XspI CTAG 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.