Rorug02G0424600

A Receptor for Ubiquitination Targets

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000270
Physical Location & Seq
Reverse (-)
54598091 .. 54601042
2952 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0424600.1

Sequence Viewer

Length: 2952 bp
ATGGCACACAGTACTGCATTGTTCCTGCTTCTTTCATTTTTACTACTGTCAGGAACTTCATACCTTGACACAGTCACACTTGGTTTCTGCAATGCAGTTCCTAATGTGGGTTGCATGGATATCGAGAGGAAAGCCCTTCTAAAGCTCAGAGAGGGACTCACTGATCCTTCAGACCGGCTTTCATCTTGGGTTGGAGTAGATTGCTGCAAATGGAGAGGTATAGGCTGCAACAAGACAACTGGACGCGTGGACAGCCTTAATCTTCGCAACCCGTATGTAGATGTTTCGGAGAGTGATGATGGAACATTGCATGCTTTAGGAGGTGAGATCAATCCTTCATTGCTTGTTTTGAAAGATTTGGTTTACTTGGATTTGAGCATGAATAACTTTGGAGGTCTAGAACTTCCAAGTTTCATTGGATCACTAGAAAAAATAACATATCTCAATCTATCTGGTGCATCATTTGGTGGAGTAATTCCCGCCAATCTTGGAAACCTTTCAAAATTGCTTCATCTTGATCTCGGTAATAATGCTGCTGAGAGTGATCTCAGATGGCTTTCCAGTCTTTCTTCCTTACAGTTTCTTAACTTGGGAGGAGCAAACCTTACCAAGGCTGCACCATATTGGCTTCCCACTGTTAATATGCTCCCTTCACTTCTTGAATTGCATTTGCCTGGTTGTGGACTTTCCATCCTTCCACCTACTCTTCCTCATATCAATTTCACATCACTTTTGGTTCTTGGCCTCTCTGCCAATGGTTTCAACTCCACACTTTCTCCCTGGTTGTTCAATCTGACTGAACTAGTCAGCCTTGACCTAAGTATGAACAATCTCAATGGAGAACTTCCAGAAACACTCGGGAGTAGTTTGACTCATCTGAAGAACCTTGATTTGTCAGAGAATTCAGACATCGGAGGTCAGTTGCCGAGAAACTTGGGAATGCTATGCAATTTGCAGTCTCTTGAACTTTCAATCAACAAAGTTACTGGTGAGATAACTGAGTTCATTGATAGTTTGTCTACATGCACAAACAGCAGCTTAGAGAGGTTGGATTTAGGTTATAACAGTCTGACAGGAAATTTGCCTAATTCATTGGGACTTCTTAAGAAGTTAAGACACCTCACGTTGTGGTCCAACTCATTTCAGGGTTCTATCCCAGAATCTATTGGAAACTTGACATCTTTGGAGGAATTTTACCTTGCAAGAAATAAACTGGGTGGAGTCATCCCAGAAAGTTTTGGGCAGCTCTCATCACTCGTTGCAGTAGATCTCTCTGAAAACACATGGGAAGGTGTTGTAACAGAAGCTCATTTTCTGAAACTTCGAAGCTTAAAAGACGTGTCAATCCAGAAAGCCTCCCCAAACATTTCCCTAGTTTTCAACATTAGTTCTAATTGGATACCTCCTTTCAAATTGAGATACTTGAACCTTAGATCATGCCAACTGGGTCCCAAATTTCCTGCATGGCTTCGAAATCAGACTGAGCTTGTCACGGTGGTCCTCAATAATGATAAGATTGTAGATACCATACCAGATTGGTTTTGGCAGTTAGATTTGTTATTAGATGAACTAGATGTTGCTTACAATCAACTAAGCGGCAAGGTGCCTAACTCGCTAAGGTTCAGCTATCCTGCTACTGTTGATTTGAGTTCAAACCTGTTTGAGGGGCCCCTCCCACTTTGGTCATCAAACATTACATCGCTGGACCTCAGGGATAATTTCTTTTCAGGGCCAATTCCTTCGAACATTGGTGATGTGATGCCCTCCTTGTCAGATTTAGACATCTCTAGGAACGGTTTGAGTGGAAGCATTCCCCTGTCTTTAGGTAATCTAAGCCTACTGACAACCATGGTTCTCTCAAATAATTACTTGTCTGGTGAAATTCCTCATTTCTGGAACAATATACCATTCTTGTATATTGTAGATATGTCAAACAACAGCCTCTCTGGTACAATTCCAAGATCCATGGATTCTCTTGGTTCACTCTTGTACTTGATTCTCTCTAGTAACAACTTGTCAGGCGAACTTCCTTCATTGAGAAACTGCACTGGCATGAAGAGTCTTGATCTTGGGGAAAATAAGTTCTTTGGAAACATTCCGGCGTGGATAGGAGAAAGCATGCTCTCTTTGTTGATTTTACGCTTGAGTTCCAACTCATTCACCGGAAGCATTCCTTCAAACTTGTGTGGCCTTTCCAATCTTCACATATTGGACCTCTCACACAATAACCTGTCTGGTCATATTCCCCGCTGTGTTGGTAACTTGAGTGGCTTGAAAACATCTTTATTCTCAGATAAAGATACATCATACCTTTACCAGGGAAAGTTGAAGGTAGTGGCAAAAGGAAGAGTGCAAGACTTCGATCCCACTCTCTATCTTGTTAATAGCCTAGATCTCTCAAACAATAACTTATCAGGTGAGATGCCGAGGGAGCTCACGAGCCTGATAAAGTTGTGGACCTTGAATTTATCCATGAATCATCTGACAGGAGTAATTCCATCAAGGATTGGGCGCATGGAGTCAATAGAAACTCTTGATTTGTCAGTAAACCAGCTTTCAGGTTCCATTCCACAGAGTATGGTTTCATTGACATTCTTGAATCATCTAAACCTCTCATACAACAACTTGTCTGGGACAATCCCAACAGGCAACCAGTTTAACAGCCTGGTTGATCCATCAATATATGAAGGCAATGCCGCTCTTTGTGGTTATCCGTTGCCTGATTGCCAAGTCAATGGCGGAACTCCTCAGGGTCCGAGTGAAGGTGGAGAAGACGCTGGCTTTAAAATGTGGGGTTTCATCATCAGCATGGTGATCGGTTTCGTTATGGGGTTCTGGGGAGTTTGTGGGAGTTTGATCATCAGCAAGTCTTGGAGGAAGAAATATTTCCACTTCACTGACAAAATGATTGTTGCTTGTATACGGAAATACCAGGGGGCACAGGAAATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box

Protein Analysis

983

Amino Acids

107.22

Weight (kDa)

5.18

Isoelectric Point (pI)

33.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRRNT_2 PF08263 42 - 77 5.6e-11 Leucine rich repeat N-terminal domain
LRR_14 PF23598 346 - 494 4.5e-12 Leucine-rich repeat region
LRR_8 PF13855 370 - 427 1.8e-08 Leucine rich repeat
LRR_8 PF13855 685 - 744 7.5e-06 Leucine rich repeat
LRR_8 PF13855 818 - 876 2e-06 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1062
AccB1I GGYRCC 1 cut(s) 1603
AccBSI CCGCTC 1 cut(s) 2699
AccI GTMKAC 2 cut(s) 1019, 2920
AccII CGCG 1 cut(s) 246
AciI CCGC 5 cut(s) 480, 1596, 2248, 2697, 2739
AclWI GGATC 5 cut(s) 158, 427, 1956, 2357, 2666
AcsI RAATTY 7 cut(s) 901, 1078, 1190, 1454, 1881, 2464, 2946
AcuI CTGAAG 2 cut(s) 153, 899
AdeI CACNNNGTG 1 cut(s) 1128
AfaI GTAC 3 cut(s) 13, 1951, 1991
AfiI CCNNNNNNNGG 6 cut(s) 107, 610, 680, 1663, 2317, 2762
AflII CTTAAG 1 cut(s) 1103
AflIII ACRYGT 2 cut(s) 244, 1338
AhlI ACTAGT 1 cut(s) 802
AjiI CACGTC 1 cut(s) 1339
AjnI CCWGG 5 cut(s) 673, 779, 2316, 2664, 2931
AloI GAACNNNNNNTCC 2 cut(s) 2066, 2098
AluBI AGCT 9 cut(s) 145, 1038, 1246, 1307, 1329, 1486, 1626, 2434, 2554
AluI AGCT 9 cut(s) 145, 1038, 1246, 1307, 1329, 1486, 1626, 2434, 2554
Alw21I GWGCWC 1 cut(s) 2436
Alw26I GTCTC 1 cut(s) 963
AlwI GGATC 5 cut(s) 158, 427, 1956, 2357, 2666
Ama87I CYCGRG 1 cut(s) 857
AoxI GGCC 4 cut(s) 742, 1667, 1730, 2188
ApaI GGGCCC 1 cut(s) 1671
ApeKI GCWGC 6 cut(s) 204, 225, 533, 614, 1035, 1243
ApoI RAATTY 7 cut(s) 901, 1078, 1190, 1454, 1881, 2464, 2946
ArsI GACNNNNNNTTYG 2 cut(s) 1063, 1095
Asp700I GAANNNNTTC 2 cut(s) 496, 2885
AspLEI GCGC 1 cut(s) 2514
AsuHPI GGTGA 7 cut(s) 335, 1001, 1763, 1889, 2152, 2429, 2824
AsuII TTCGAA 3 cut(s) 1324, 1471, 1742
AvaI CYCGRG 1 cut(s) 857
AvaII GGWCC 7 cut(s) 1131, 1448, 1498, 1705, 2212, 2457, 2753
AxyI CCTNAGG 2 cut(s) 1709, 2748
BaeGI GKGCMC 2 cut(s) 1671, 2941
BanI GGYRCC 1 cut(s) 1603
BanII GRGCYC 2 cut(s) 1671, 2436
BauI CACGAG 1 cut(s) 2437
BbsI GAAGAC 1 cut(s) 2778
Bbv12I GWGCWC 1 cut(s) 2436
BbvI GCAGC 6 cut(s) 191, 212, 520, 601, 1047, 1255
BccI CCATC 5 cut(s) 293, 546, 698, 2506, 2683
BcgI CGANNNNNNTGC 4 cut(s) 103, 137, 2797, 2831
BciT130I CCWGG 5 cut(s) 675, 781, 2318, 2666, 2933
BciVI GTATCC 1 cut(s) 1392
BclI TGATCA 1 cut(s) 2856
BcoDI GTCTC 1 cut(s) 963
BcuI ACTAGT 1 cut(s) 802
BfaI CTAG 8 cut(s) 398, 425, 803, 1373, 1571, 1788, 2004, 2390
BfrI CTTAAG 1 cut(s) 1103
BfuI GTATCC 1 cut(s) 1392
BglII AGATCT 2 cut(s) 1267, 2392
BisI GCNGC 8 cut(s) 205, 226, 534, 615, 1036, 1244, 1597, 2697
BlsI GCNGC 8 cut(s) 206, 227, 535, 616, 1037, 1245, 1598, 2698
BmcAI AGTACT 1 cut(s) 13
Bme1390I CCNGG 5 cut(s) 675, 781, 2318, 2666, 2933
Bme18I GGWCC 7 cut(s) 1131, 1448, 1498, 1705, 2212, 2457, 2753
BmeT110I CYCGRG 1 cut(s) 857
BmgBI CACGTC 1 cut(s) 1339
BmiI GGNNCC 8 cut(s) 1449, 1450, 1605, 1668, 1669, 1670, 2563, 2754
BmrFI CCNGG 5 cut(s) 675, 781, 2318, 2666, 2933
BmrI ACTGGG 2 cut(s) 1223, 1454
BmsI GCATC 3 cut(s) 467, 1749, 2412
BmuI ACTGGG 2 cut(s) 1223, 1454
BpiI GAAGAC 1 cut(s) 2778
BplI GAGNNNNNCTC 2 cut(s) 141, 173
Bpu10I CCTNAGC 1 cut(s) 1616
Bpu14I TTCGAA 3 cut(s) 1324, 1471, 1742
BpuEI CTTGAG 2 cut(s) 2164, 2284
BsaJI CCNNGG 7 cut(s) 609, 779, 1848, 1965, 2317, 2426, 2932
BsaWI WCCGGW 1 cut(s) 2162
BsaXI ACNNNNNCTCC 2 cut(s) 760, 790
Bsc4I CCNNNNNNNGG 6 cut(s) 107, 610, 680, 1663, 2317, 2762
Bse118I RCCGGY 1 cut(s) 174
Bse1I ACTGG 7 cut(s) 244, 561, 991, 1218, 1449, 2053, 2653
Bse21I CCTNAGG 2 cut(s) 1709, 2748
Bse3DI GCAATG 4 cut(s) 97, 305, 338, 2698
BseBI CCWGG 5 cut(s) 675, 781, 2318, 2666, 2933
BseDI CCNNGG 7 cut(s) 609, 779, 1848, 1965, 2317, 2426, 2932
BseGI GGATG 2 cut(s) 690, 1224
BseLI CCNNNNNNNGG 6 cut(s) 107, 610, 680, 1663, 2317, 2762
BseMI GCAATG 4 cut(s) 97, 305, 338, 2698
BseMII CTCAG 8 cut(s) 160, 528, 562, 990, 1473, 1723, 2304, 2762
BseNI ACTGG 7 cut(s) 244, 561, 991, 1218, 1449, 2053, 2653
BseRI GAGGAG 2 cut(s) 609, 2736
BseSI GKGCMC 2 cut(s) 1671, 2941
BseXI GCAGC 6 cut(s) 191, 212, 520, 601, 1047, 1255
BsgI GTGCAG 2 cut(s) 600, 2029
Bsh1236I CGCG 1 cut(s) 246
BshFI GGCC 4 cut(s) 744, 1669, 1732, 2190
BshNI GGYRCC 1 cut(s) 1603
BsiHKAI GWGCWC 1 cut(s) 2436
BsiHKCI CYCGRG 1 cut(s) 857
BsiSI CCGG 3 cut(s) 175, 2099, 2163
BslFI GGGAC 4 cut(s) 168, 1110, 1434, 2647
BslI CCNNNNNNNGG 6 cut(s) 107, 610, 680, 1663, 2317, 2762
BsmAI GTCTC 1 cut(s) 963
BsmFI GGGAC 4 cut(s) 168, 1110, 1434, 2647
BsmI GAATGC 3 cut(s) 945, 1809, 2169
BsnI GGCC 4 cut(s) 744, 1669, 1732, 2190
BsoBI CYCGRG 1 cut(s) 857
Bsp119I TTCGAA 3 cut(s) 1324, 1471, 1742
Bsp120I GGGCCC 1 cut(s) 1667
Bsp1286I GDGCHC 3 cut(s) 1671, 2436, 2941
Bsp19I CCATGG 2 cut(s) 1848, 1965
BspACI CCGC 5 cut(s) 480, 1596, 2248, 2697, 2739
BspANI GGCC 4 cut(s) 744, 1669, 1732, 2190
BspCNI CTCAG 8 cut(s) 159, 529, 561, 991, 1474, 1722, 2303, 2761
BspFNI CGCG 1 cut(s) 246
BspLI GGNNCC 8 cut(s) 1449, 1450, 1605, 1668, 1669, 1670, 2563, 2754
BspPI GGATC 5 cut(s) 158, 427, 1956, 2357, 2666
BspT104I TTCGAA 3 cut(s) 1324, 1471, 1742
BspT107I GGYRCC 1 cut(s) 1603
BspTI CTTAAG 1 cut(s) 1103
BsrBI CCGCTC 1 cut(s) 2699
BsrDI GCAATG 4 cut(s) 97, 305, 338, 2698
BsrFI RCCGGY 1 cut(s) 174
BsrI ACTGG 7 cut(s) 244, 561, 991, 1218, 1449, 2053, 2653
BssAI RCCGGY 1 cut(s) 174
BssECI CCNNGG 7 cut(s) 609, 779, 1848, 1965, 2317, 2426, 2932
BssNAI GTATAC 1 cut(s) 2921
BssSI CACGAG 1 cut(s) 2437
BssT1I CCWWGG 3 cut(s) 609, 1848, 1965
Bst1107I GTATAC 1 cut(s) 2921
Bst2BI CACGAG 1 cut(s) 2437
Bst2UI CCWGG 5 cut(s) 675, 781, 2318, 2666, 2933
Bst4CI ACNGT 9 cut(s) 11, 48, 73, 579, 637, 1067, 1495, 1639, 1796
Bst6I CTCTTC 3 cut(s) 711, 2051, 2341
BstAFI CTTAAG 1 cut(s) 1103
BstBI TTCGAA 3 cut(s) 1324, 1471, 1742
BstC8I GCNNGC 3 cut(s) 312, 2120, 2779
BstDSI CCRYGG 2 cut(s) 1848, 1965
BstENI CCTNNNNNAGG 3 cut(s) 608, 1661, 2315
BstF5I GGATG 2 cut(s) 690, 1224
BstFNI CGCG 1 cut(s) 246
BstHHI GCGC 1 cut(s) 2514
BstMAI GTCTC 1 cut(s) 963
BstMWI GCNNNNNNNGC 4 cut(s) 252, 1032, 1612, 2431
BstNI CCWGG 5 cut(s) 675, 781, 2318, 2666, 2933
BstNSI RCATGY 3 cut(s) 314, 1026, 2122
BstSCI CCNGG 5 cut(s) 673, 779, 2316, 2664, 2931
BstSLI GKGCMC 2 cut(s) 1671, 2941
BstUI CGCG 1 cut(s) 246
BstV1I GCAGC 6 cut(s) 191, 212, 520, 601, 1047, 1255
BstV2I GAAGAC 1 cut(s) 2778
BstX2I RGATCY 3 cut(s) 1267, 1961, 2392
BstXI CCANNNNNNTGG 1 cut(s) 2735
BstYI RGATCY 3 cut(s) 1267, 1961, 2392
BstZ17I GTATAC 1 cut(s) 2921
Bsu36I CCTNAGG 2 cut(s) 1709, 2748
BsuI GTATCC 1 cut(s) 1392
BsuRI GGCC 4 cut(s) 744, 1669, 1732, 2190
BtgI CCRYGG 2 cut(s) 1848, 1965
BtgZI GCGATG 1 cut(s) 1683
BtrI CACGTC 1 cut(s) 1339
BtsCI GGATG 2 cut(s) 690, 1224
BtsIMutI CAGTG 4 cut(s) 159, 633, 2046, 2895
Cac8I GCNNGC 3 cut(s) 312, 2120, 2779
CfoI GCGC 1 cut(s) 2514
Cfr10I RCCGGY 1 cut(s) 174
CseI GACGC 2 cut(s) 252, 2783
Csp6I GTAC 3 cut(s) 12, 1950, 1990
CviQI GTAC 3 cut(s) 12, 1950, 1990
DraI TTTAAA 1 cut(s) 2785
DraIII CACNNNGTG 1 cut(s) 1128
Eam1104I CTCTTC 3 cut(s) 711, 2051, 2341
EarI CTCTTC 3 cut(s) 711, 2051, 2341
EciI GGCGGA 1 cut(s) 2754
Ecl136II GAGCTC 1 cut(s) 2434
Eco130I CCWWGG 3 cut(s) 609, 1848, 1965
Eco24I GRGCYC 2 cut(s) 1671, 2436
Eco32I GATATC 1 cut(s) 121
Eco47I GGWCC 7 cut(s) 1131, 1448, 1498, 1705, 2212, 2457, 2753
Eco53kI GAGCTC 1 cut(s) 2434
Eco57I CTGAAG 2 cut(s) 153, 899
Eco81I CCTNAGG 2 cut(s) 1709, 2748
Eco88I CYCGRG 1 cut(s) 857
EcoICRI GAGCTC 1 cut(s) 2434
EcoNI CCTNNNNNAGG 3 cut(s) 608, 1661, 2315
EcoO109I RGGNCCY 3 cut(s) 1448, 1667, 1668
EcoRI GAATTC 1 cut(s) 901
EcoRII CCWGG 5 cut(s) 673, 779, 2316, 2664, 2931
EcoRV GATATC 1 cut(s) 121
EcoT14I CCWWGG 3 cut(s) 609, 1848, 1965
EcoT38I GRGCYC 2 cut(s) 1671, 2436
ErhI CCWWGG 3 cut(s) 609, 1848, 1965
FalI AAGNNNNNCTT 2 cut(s) 2158, 2190
FaqI GGGAC 4 cut(s) 168, 1110, 1434, 2647
FauI CCCGC 2 cut(s) 487, 2255
FbaI TGATCA 1 cut(s) 2856
FblI GTMKAC 2 cut(s) 1019, 2920
Fnu4HI GCNGC 8 cut(s) 205, 226, 534, 615, 1036, 1244, 1597, 2697
FokI GGATG 2 cut(s) 677, 1211
FriOI GRGCYC 2 cut(s) 1671, 2436
Fsp4HI GCNGC 8 cut(s) 205, 226, 534, 615, 1036, 1244, 1597, 2697
FspBI CTAG 8 cut(s) 398, 425, 803, 1373, 1571, 1788, 2004, 2390
GlaI GCGC 1 cut(s) 2513
GluI GCNGC 8 cut(s) 205, 226, 534, 615, 1036, 1244, 1597, 2697
HaeIII GGCC 4 cut(s) 744, 1669, 1732, 2190
HapII CCGG 3 cut(s) 175, 2099, 2163
HgaI GACGC 2 cut(s) 252, 2783
HhaI GCGC 1 cut(s) 2514
Hin6I GCGC 1 cut(s) 2512
HinP1I GCGC 1 cut(s) 2512
HindIII AAGCTT 1 cut(s) 1327
HpaII CCGG 3 cut(s) 175, 2099, 2163
HphI GGTGA 7 cut(s) 335, 1001, 1763, 1889, 2152, 2429, 2824
Hpy166II GTNNAC 8 cut(s) 250, 364, 683, 1020, 1982, 2457, 2548, 2921
Hpy8I GTNNAC 8 cut(s) 250, 364, 683, 1020, 1982, 2457, 2548, 2921
HpyCH4III ACNGT 9 cut(s) 11, 48, 73, 579, 637, 1067, 1495, 1639, 1796
HpyCH4IV ACGT 2 cut(s) 1124, 1338
HpyF10VI GCNNNNNNNGC 4 cut(s) 252, 1032, 1612, 2431
HpySE526I ACGT 2 cut(s) 1124, 1338
HspAI GCGC 1 cut(s) 2512
KflI GGGWCCC 1 cut(s) 1448
Ksp22I TGATCA 1 cut(s) 2856
LmnI GCTCC 3 cut(s) 596, 651, 2431
Lsp1109I GCAGC 6 cut(s) 191, 212, 520, 601, 1047, 1255
LweI GCATC 3 cut(s) 467, 1749, 2412
MaeI CTAG 8 cut(s) 398, 425, 803, 1373, 1571, 1788, 2004, 2390
MaeII ACGT 2 cut(s) 1124, 1338
MaeIII GTNAC 6 cut(s) 73, 982, 1297, 1489, 2006, 2258
MbiI CCGCTC 1 cut(s) 2699
MboII GAAGA 9 cut(s) 254, 561, 698, 892, 2068, 2192, 2358, 2783, 2890
MflI RGATCY 3 cut(s) 1267, 1961, 2392
MhlI GDGCHC 3 cut(s) 1671, 2436, 2941
MluI ACGCGT 1 cut(s) 244
MlyI GAGTC 5 cut(s) 150, 865, 1230, 2068, 2528
MmeI TCCRAC 4 cut(s) 172, 1029, 1158, 2175
MroXI GAANNNNTTC 2 cut(s) 496, 2885
MslI CAYNNNNRTG 2 cut(s) 2051, 2807
MspA1I CMGCKG 1 cut(s) 2250
MspCI CTTAAG 1 cut(s) 1103
MspI CCGG 3 cut(s) 175, 2099, 2163
MspR9I CCNGG 5 cut(s) 675, 781, 2318, 2666, 2933
Mva1269I GAATGC 3 cut(s) 945, 1809, 2169
MvaI CCWGG 5 cut(s) 675, 781, 2318, 2666, 2933
MvnI CGCG 1 cut(s) 246
MwoI GCNNNNNNNGC 4 cut(s) 252, 1032, 1612, 2431
NcoI CCATGG 2 cut(s) 1848, 1965
NlaIV GGNNCC 8 cut(s) 1449, 1450, 1605, 1668, 1669, 1670, 2563, 2754
NmeAIII GCCGAG 2 cut(s) 951, 2451
NmuCI GTSAC 2 cut(s) 73, 1489
NspI RCATGY 3 cut(s) 314, 1026, 2122
NspV TTCGAA 3 cut(s) 1324, 1471, 1742
PaeI GCATGC 2 cut(s) 314, 2122
PctI GAATGC 3 cut(s) 945, 1809, 2169
PdmI GAANNNNTTC 2 cut(s) 496, 2885
PfeI GAWTC 5 cut(s) 1160, 1970, 1996, 2476, 2599
PflFI GACNNNGTC 1 cut(s) 71
PkrI GCNGC 8 cut(s) 206, 227, 535, 616, 1037, 1245, 1598, 2698
PleI GAGTC 5 cut(s) 150, 865, 1229, 2067, 2527
PpsI GAGTC 5 cut(s) 150, 865, 1229, 2067, 2527
PpuMI RGGWCCY 1 cut(s) 1448
PsiI TTATAA 1 cut(s) 1062
Psp124BI GAGCTC 1 cut(s) 2436
Psp5II RGGWCCY 1 cut(s) 1448
Psp6I CCWGG 5 cut(s) 673, 779, 2316, 2664, 2931
PspGI CCWGG 5 cut(s) 673, 779, 2316, 2664, 2931
PspN4I GGNNCC 8 cut(s) 1449, 1450, 1605, 1668, 1669, 1670, 2563, 2754
PspOMI GGGCCC 1 cut(s) 1667
PspPPI RGGWCCY 1 cut(s) 1448
PsuI RGATCY 3 cut(s) 1267, 1961, 2392
PsyI GACNNNGTC 1 cut(s) 71
RsaI GTAC 3 cut(s) 13, 1951, 1991
RsaNI GTAC 3 cut(s) 12, 1950, 1990
RseI CAYNNNNRTG 2 cut(s) 2051, 2807
SacI GAGCTC 1 cut(s) 2436
SatI GCNGC 8 cut(s) 205, 226, 534, 615, 1036, 1244, 1597, 2697
ScaI AGTACT 1 cut(s) 13
SchI GAGTC 5 cut(s) 150, 865, 1230, 2068, 2528
ScrFI CCNGG 5 cut(s) 675, 781, 2318, 2666, 2933
SduI GDGCHC 3 cut(s) 1671, 2436, 2941
SfaNI GCATC 3 cut(s) 467, 1749, 2412
SfuI TTCGAA 3 cut(s) 1324, 1471, 1742
SinI GGWCC 7 cut(s) 1131, 1448, 1498, 1705, 2212, 2457, 2753
SmiMI CAYNNNNRTG 2 cut(s) 2051, 2807
SmlI CTYRAG 3 cut(s) 1103, 2143, 2263
SmoI CTYRAG 3 cut(s) 1103, 2143, 2263
SpeI ACTAGT 1 cut(s) 802
SphI GCATGC 2 cut(s) 314, 2122
SsiI CCGC 5 cut(s) 480, 1596, 2248, 2697, 2739
SspI AATATT 1 cut(s) 2885
SspMI CTAG 8 cut(s) 398, 425, 803, 1373, 1571, 1788, 2004, 2390
SstI GAGCTC 1 cut(s) 2436
StyD4I CCNGG 5 cut(s) 673, 779, 2316, 2664, 2931
StyI CCWWGG 3 cut(s) 609, 1848, 1965
TaaI ACNGT 9 cut(s) 11, 48, 73, 579, 637, 1067, 1495, 1639, 1796
TaiI ACGT 2 cut(s) 1127, 1341
TaqI TCGA 5 cut(s) 123, 1324, 1471, 1742, 2361
TatI WGTACW 2 cut(s) 11, 1989
TauI GCSGC 2 cut(s) 1599, 2699
TfiI GAWTC 5 cut(s) 1160, 1970, 1996, 2476, 2599
TscAI CASTG 4 cut(s) 166, 640, 2053, 2902
TseFI GTSAC 2 cut(s) 73, 1489
TseI GCWGC 6 cut(s) 204, 225, 533, 614, 1035, 1243
Tsp45I GTSAC 2 cut(s) 73, 1489
TspGWI ACGGA 2 cut(s) 2703, 2938
TspRI CASTG 4 cut(s) 166, 640, 2053, 2902
Tth111I GACNNNGTC 1 cut(s) 71
Vha464I CTTAAG 1 cut(s) 1103
VpaK11BI GGWCC 7 cut(s) 1131, 1448, 1498, 1705, 2212, 2457, 2753
XagI CCTNNNNNAGG 3 cut(s) 608, 1661, 2315
XapI RAATTY 7 cut(s) 901, 1078, 1190, 1454, 1881, 2464, 2946
XbaI TCTAGA 1 cut(s) 397
XceI RCATGY 3 cut(s) 314, 1026, 2122
XcmI CCANNNNNNNNNTGG 1 cut(s) 1539
XmiI GTMKAC 2 cut(s) 1019, 2920
XmnI GAANNNNTTC 2 cut(s) 496, 2885
XspI CTAG 8 cut(s) 398, 425, 803, 1373, 1571, 1788, 2004, 2390
ZrmI AGTACT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.