Rroxscaffold_6G00420940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0000270
Physical Location & Seq
Forward (+)
42139646 .. 42152509
12864 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00420940.1

Sequence Viewer

Length: 1848 bp
ATGGCCGCGCCGCCAACTAGAATGTCGTCAGCGGCTCACCGCCACCGAGCACCACTTCGCCTACCTCGACATCCCTGCCGCCGACCGAGTCAAGATAGCCTCCACTCTCTTGCGTGGCGACGTGAGCCCCCGGATGTGCTTTGGTACGAGTCTCGGTACCGGAAAGTGCTCCGGGGTGGATTTTCGGGTATGAGTTTCGAGGTTTTTCGACCGGAGACGCTCATCGCCGCTGCTTGTAATTTAGAGCAGAAGAGGTCGGTGAAGGAGTATGAGGTGGAGTTTCGAGGGCCGGCTGGAGAGTGCGTCCAACAGAAGGTGGGGGCAATGTCTGAATCTCTAGGGGTAGTGCCCTCCAAGTCTGAGTCTCATGAGTTCCAGTACTTAAAAAGATCAAAAACATCATCACCAATACATCGCTCAAACTTCAGGATTAATATTGATGATCTCCCTGACCCTCTATTGTTTGAAATTCTTCTTCGACTTCCGGAAAAGTCCGCAGCTCGGTACAAGTGTGTGTCAAGGCGTTGGTTCTCTCTCATCTCCCATCATACTTTTCTTTCTCGTTTTCTGTGTCTCCAACGTGATAAACGAAAACCCTTGCCCATGAAACCTACACTCATATTGTCGAATGAAAAGGAATTTTTTTCCATCTCCGAGATTCCGATGTTCAAAACAGGCAGCTTCTCTCTTGATTTTCTCCCTTGTTATCAATCTACAAAAATCCAAAAAGCAACAGATGATTTTCCAGTTGTGGTAGCATCGTTTAATGACTTGGTGTTGTGTTGCGCATCCACGAAATATCAACGTGATTACTACATCTGCAATCCATACACCAAGCAATGGACTGCTCTTCCTCCAGCCCCTCAATGCCGCTATGAAGTAAGAGTGGGGTTCACTTGCGATCCCTACTATTACTATAAAGAAGATGTTGACAAAAGAGAAAAAGATGGTAATAGTATTTGTAGTAGTACCATCCAGCTTAATATTGACTACAAGTATGCAATTGTGCGTATACTTCAACCATCACTGCATTGGCTTAATTCCTCGGAACTCAACGTGGAGATCTTCTCTTCTGAGACTGGTAAATGGACAGAGTCGGTTGTTTTGTGCCCACCAAACTTACGTTTTGATGGATTGCGTTACAATCCAGGCGTTGCTTACAAGGGAAAGTTGTATTGGGTGCATGAATCTCACCACTGTATGATGATCGCGTTGGATCCCTTCTCGTTCAGTAACAACACTAATAATAGTACTACTGATCGTAAATACTATTTTCATGTTGTTGATCTTCCTTCTGAGGAGTGGGGAACAATAAGTGTGAGCCAAGAGGGACGTCTTCGGTTGTGTAGGGGCCGTTTGTTTGGAGATGGAGATATTGAGCATTTGAGTAAAGGTCTGAGTATTTGGGAGTTGAAAGATGACGATGATGACAAGGTTGACGGTAGAGTTGGGAAGTGGTGTATGATAAATACCCCTCCTCTGGACAAAATGGTTTCGGAAAATCCATTGATCACCGAATGGAGCCGCTCAAGTGATCCTGCTGTGGAAGTAGCTTTCGACCCCAATAATGATGACATTTTGTATGTAACATCGTATGACGAAATTATTATGTGCAACATTCGTGCAAATACATTGAAGGAGGTTACAACCATTGACGGTTGGTTAACCTCTGTATTCCGATTCATGGTGCCGTGGTGGCCGACACCTGTTCCTAAAATTGAGTACAACAACCACGAGGATATGCATGCAGCCCATCTTAACAGTTGTCTCGTATGCTCGTGGCAGCCTCTGGATCCCAATTTGCTTCTTGCACTAAAAGCAACAGCTAGTCCACTACAATATGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box F-box-like

Protein Analysis

615

Amino Acids

70.99

Weight (kDa)

7.21

Isoelectric Point (pI)

53.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 146 - 186 4.3e-07 F-box domain
F-box-like PF12937 146 - 192 1.4e-06 F-box-like
b-prop_At3g26010-like PF24750 245 - 545 3.2e-14 F-box protein At3g26010-like, beta-propeller
FBA_1 PF07734 254 - 424 5.9e-06 F-box associated beta propeller domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000270)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g30622 FvH4_4g16921 FvH4_4g17782 FvH4_4g17783 FvH4_4g18120 FvH4_6g01541 FvH4_6g02021 FvH4_6g02041 FvH4_6g02071 FvH4_6g02171 FvH4_6g10900 FvH4_6g37932
malus_domestica MD03G1256400.v1.1 MD05G1244200.v1.1 MD10G1000600.v1.1 MD14G1187900.v1.1 MD15G1018100.v1.1
prunus_persica Prupe.2G073200_v2.0.a1 Prupe.3G246100_v2.0.a1 Prupe.3G265100_v2.0.a1 Prupe.4G034700_v2.0.a1 Prupe.4G052100_v2.0.a1 Prupe.4G053600_v2.0.a1 Prupe.5G068800_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.5G070600_v2.0.a1 Prupe.6G075400_v2.0.a1 Prupe.6G075500_v2.0.a1 Prupe.7G028100_v2.0.a1 Prupe.8G074300_v2.0.a1 Prupe.8G110700_v2.0.a1
pyrus_communis pycom05g22060
rosa_chinensis RchiOBHm_Chr2g0151111 RchiOBHm_Chr3g0449911 RchiOBHm_Chr3g0450211 RchiOBHm_Chr3g0457271
rosa_laevigata RLG00000010311 RLG00000010333 RLG00000020423 RLG00000020530 RLG00000020531 RLG00000025776 RLG00000025778 RLG00000025779 RLG00000025780 RLG00000025782 RLG00000025784 RLG00000025786 RLG00000025789 RLG00000025797 RLG00000025820 RLG00000029780 RLG00000029788 RLG00000029793 RLG00000029794 RLG00000029795 RLG00000029798
rosa_multiflora Rmu_co8159556.1_g000001 Rmu_co8268783.1_g000001 Rmu_co8467147.1_g000001 Rmu_sc0000610.1_g000001 Rmu_sc0000610.1_g000009 Rmu_sc0002725.1_g000015 Rmu_sc0004401.1_g000009 Rmu_sc0004404.1_g000009 Rmu_sc0004404.1_g000016 Rmu_sc0005524.1_g000001 Rmu_sc0005524.1_g000004 Rmu_sc0006867.1_g000019 Rmu_sc0008007.1_g000002 Rmu_sc0010912.1_g000004 Rmu_sc0010912.1_g000005 Rmu_sc0013983.1_g000005 Rmu_sc0020391.1_g000001 Rmu_sc0032173.1_g000001 Rmu_sc0036096.1_g000001 Rmu_sc0043012.1_g000001 Rmu_ssc0000424.1_g000019
rosa_roxburghii Rroxscaffold_2G00097990 Rroxscaffold_6G00420940 Rroxscaffold_6G00427700
rosa_rugosa Rorug02G0424600 Rorug02G0424700 Rorug02G0623900 Rorug05G0571000 Rorug05G0571100 Rorug06G0395100
rosa_samantha Rh1CG104900 Rh1DG114100 Rh2AG485200 Rh2BG497300 Rh2DG508200 Rh2DG508300 Rh3AG022000 Rh3AG022300 Rh3AG022500 Rh3AG022600 Rh3AG022800 Rh3AG023000 Rh3BG020000 Rh3BG022700 Rh3BG022900 Rh3BG023000 Rh3BG023200 Rh3BG023300 Rh3BG023600 Rh3CG018700 Rh3CG021100 Rh3CG021600 Rh3CG021800 Rh3CG021900 Rh3CG022100 Rh3CG022200 Rh3CG022600 Rh3DG022400 Rh3DG022700 Rh3DG022800 Rh3DG023000 Rh3DG023100 Rh3DG023500 Rh6AG511800 Rh6AG512500 Rh6BG523100 Rh6BG523300 Rh6CG528700 Rh6DG514700
rosa_wichuraiana Rw1G008720 Rw2G039750 Rw3G001810 Rw3G002050 Rw6G044530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1336
Acc16I TGCGCA 1 cut(s) 787
Acc65I GGTACC 1 cut(s) 156
AccB1I GGYRCC 2 cut(s) 156, 1687
AccB7I CCANNNNNTGG 1 cut(s) 840
AccBSI CCGCTC 1 cut(s) 1527
AccI GTMKAC 1 cut(s) 1012
AccII CGCG 2 cut(s) 8, 1211
AccIII TCCGGA 1 cut(s) 484
AciI CCGC 9 cut(s) 6, 11, 32, 40, 79, 228, 495, 871, 1525
AclWI GGATC 6 cut(s) 896, 1211, 1224, 1529, 1787, 1800
AcoI YGGCCR 2 cut(s) 3, 1697
AcsI RAATTY 2 cut(s) 468, 638
AcuI CTGAAG 1 cut(s) 409
AcyI GRCGYC 1 cut(s) 1333
AfaI GTAC 7 cut(s) 146, 158, 380, 506, 970, 1252, 1724
AfiI CCNNNNNNNGG 5 cut(s) 313, 501, 840, 1480, 1684
AgsI TTSAA 5 cut(s) 467, 670, 1019, 1414, 1636
AjiI CACGTC 1 cut(s) 122
AjnI CCWGG 1 cut(s) 1147
AjuI GAANNNNNNNTTGG 2 cut(s) 1159, 1191
AluBI AGCT 5 cut(s) 500, 681, 979, 1553, 1826
AluI AGCT 5 cut(s) 500, 681, 979, 1553, 1826
Alw21I GWGCWC 2 cut(s) 52, 171
Alw26I GTCTC 6 cut(s) 156, 209, 369, 578, 1070, 1772
AlwI GGATC 6 cut(s) 896, 1211, 1224, 1529, 1787, 1800
AlwNI CAGNNNCTG 1 cut(s) 1789
Aor13HI TCCGGA 1 cut(s) 484
AoxI GGCC 4 cut(s) 3, 287, 1351, 1697
ApeKI GCWGC 5 cut(s) 230, 497, 678, 1748, 1783
ApoI RAATTY 2 cut(s) 468, 638
AseI ATTAAT 1 cut(s) 432
Asp700I GAANNNNTTC 1 cut(s) 471
Asp718I GGTACC 1 cut(s) 156
AspLEI GCGC 2 cut(s) 10, 788
AspS9I GGNCC 2 cut(s) 287, 1351
AsuC2I CCSGG 2 cut(s) 131, 173
AsuHPI GGTGA 5 cut(s) 29, 271, 396, 1184, 1504
BaeGI GKGCMC 2 cut(s) 351, 1112
BaeI ACNNNNGTAYC 2 cut(s) 496, 529
BamHI GGATCC 2 cut(s) 1216, 1792
BanI GGYRCC 2 cut(s) 156, 1687
BanII GRGCYC 1 cut(s) 129
BauI CACGAG 2 cut(s) 1733, 1777
BbsI GAAGAC 1 cut(s) 1328
Bbv12I GWGCWC 2 cut(s) 52, 171
BbvI GCAGC 5 cut(s) 217, 509, 690, 1760, 1795
BccI CCATC 8 cut(s) 552, 656, 941, 980, 1030, 1124, 1361, 1761
BceAI ACGGC 2 cut(s) 1338, 1675
BcgI CGANNNNNNTGC 2 cut(s) 57, 91
BciT130I CCWGG 1 cut(s) 1149
BclI TGATCA 1 cut(s) 1509
BcnI CCSGG 2 cut(s) 131, 173
BcoDI GTCTC 6 cut(s) 156, 209, 369, 578, 1070, 1772
BfaI CTAG 4 cut(s) 18, 338, 1827, 1846
BglI GCCNNNNNGGC 1 cut(s) 1696
BglII AGATCT 1 cut(s) 1062
BmcAI AGTACT 2 cut(s) 380, 1252
Bme1390I CCNGG 3 cut(s) 131, 173, 1149
BmgBI CACGTC 1 cut(s) 122
BmgT120I GGNCC 2 cut(s) 287, 1351
BmiI GGNNCC 6 cut(s) 158, 1218, 1352, 1523, 1689, 1794
BmrFI CCNGG 3 cut(s) 131, 173, 1149
BmsI GCATC 2 cut(s) 767, 797
BpiI GAAGAC 1 cut(s) 1328
BplI GAGNNNNNCTC 2 cut(s) 1052, 1084
BpmI CTGGAG 2 cut(s) 315, 840
BpuEI CTTGAG 1 cut(s) 1513
BpuMI CCSGG 2 cut(s) 131, 173
BsaHI GRCGYC 1 cut(s) 1333
BsaJI CCNNGG 4 cut(s) 129, 172, 1044, 1691
BsaWI WCCGGW 3 cut(s) 159, 211, 484
BsaXI ACNNNNNCTCC 2 cut(s) 288, 318
Bsc4I CCNNNNNNNGG 5 cut(s) 313, 501, 840, 1480, 1684
Bse118I RCCGGY 1 cut(s) 289
Bse1I ACTGG 3 cut(s) 376, 746, 1084
Bse3DI GCAATG 2 cut(s) 330, 845
BseAI TCCGGA 1 cut(s) 484
BseBI CCWGG 1 cut(s) 1149
BseDI CCNNGG 4 cut(s) 129, 172, 1044, 1691
BseGI GGATG 4 cut(s) 70, 139, 788, 972
BseLI CCNNNNNNNGG 5 cut(s) 313, 501, 840, 1480, 1684
BseMI GCAATG 2 cut(s) 330, 845
BseMII CTCAG 4 cut(s) 351, 1065, 1287, 1388
BseNI ACTGG 3 cut(s) 376, 746, 1084
BseRI GAGGAG 2 cut(s) 1313, 1467
BseSI GKGCMC 2 cut(s) 351, 1112
BseXI GCAGC 5 cut(s) 217, 509, 690, 1760, 1795
Bsh1236I CGCG 2 cut(s) 8, 1211
Bsh1285I CGRYCG 2 cut(s) 86, 212
BshFI GGCC 4 cut(s) 5, 289, 1353, 1699
BshNI GGYRCC 2 cut(s) 156, 1687
BsiEI CGRYCG 2 cut(s) 86, 212
BsiHKAI GWGCWC 2 cut(s) 52, 171
BsiSI CCGG 6 cut(s) 131, 160, 172, 212, 290, 485
BslFI GGGAC 1 cut(s) 1344
BslI CCNNNNNNNGG 5 cut(s) 313, 501, 840, 1480, 1684
BsmAI GTCTC 6 cut(s) 156, 209, 369, 578, 1070, 1772
BsmBI CGTCTC 1 cut(s) 209
BsmFI GGGAC 1 cut(s) 1344
BsnI GGCC 4 cut(s) 5, 289, 1353, 1699
Bsp1286I GDGCHC 5 cut(s) 52, 129, 171, 351, 1112
Bsp13I TCCGGA 1 cut(s) 484
BspACI CCGC 9 cut(s) 6, 11, 32, 40, 79, 228, 495, 871, 1525
BspANI GGCC 4 cut(s) 5, 289, 1353, 1699
BspCNI CTCAG 4 cut(s) 352, 1066, 1288, 1389
BspEI TCCGGA 1 cut(s) 484
BspFNI CGCG 2 cut(s) 8, 1211
BspHI TCATGA 1 cut(s) 367
BspLI GGNNCC 6 cut(s) 158, 1218, 1352, 1523, 1689, 1794
BspPI GGATC 6 cut(s) 896, 1211, 1224, 1529, 1787, 1800
BspQI GCTCTTC 1 cut(s) 855
BspT107I GGYRCC 2 cut(s) 156, 1687
BsrBI CCGCTC 1 cut(s) 1527
BsrDI GCAATG 2 cut(s) 330, 845
BsrFI RCCGGY 1 cut(s) 289
BsrI ACTGG 3 cut(s) 376, 746, 1084
BssAI RCCGGY 1 cut(s) 289
BssECI CCNNGG 4 cut(s) 129, 172, 1044, 1691
BssNAI GTATAC 1 cut(s) 1013
BssNI GRCGYC 1 cut(s) 1333
BssSI CACGAG 2 cut(s) 1733, 1777
Bst1107I GTATAC 1 cut(s) 1013
Bst2BI CACGAG 2 cut(s) 1733, 1777
Bst2UI CCWGG 1 cut(s) 1149
Bst4CI ACNGT 4 cut(s) 1199, 1442, 1658, 1763
Bst6I CTCTTC 3 cut(s) 245, 855, 1075
BstACI GRCGYC 1 cut(s) 1333
BstC8I GCNNGC 2 cut(s) 291, 1746
BstDEI CTNAG 4 cut(s) 360, 1074, 1296, 1397
BstDSI CCRYGG 1 cut(s) 1691
BstF5I GGATG 4 cut(s) 70, 139, 788, 972
BstFNI CGCG 2 cut(s) 8, 1211
BstHHI GCGC 2 cut(s) 10, 788
BstMAI GTCTC 6 cut(s) 156, 209, 369, 578, 1070, 1772
BstMCI CGRYCG 2 cut(s) 86, 212
BstMWI GCNNNNNNNGC 3 cut(s) 124, 1696, 1817
BstNI CCWGG 1 cut(s) 1149
BstNSI RCATGY 1 cut(s) 1748
BstSCI CCNGG 3 cut(s) 129, 171, 1147
BstSLI GKGCMC 2 cut(s) 351, 1112
BstUI CGCG 2 cut(s) 8, 1211
BstV1I GCAGC 5 cut(s) 217, 509, 690, 1760, 1795
BstV2I GAAGAC 1 cut(s) 1328
BstX2I RGATCY 3 cut(s) 1062, 1216, 1792
BstYI RGATCY 3 cut(s) 1062, 1216, 1792
BstZ17I GTATAC 1 cut(s) 1013
BsuRI GGCC 4 cut(s) 5, 289, 1353, 1699
BtgI CCRYGG 1 cut(s) 1691
BtgZI GCGATG 2 cut(s) 208, 398
BtrI CACGTC 1 cut(s) 122
BtsCI GGATG 4 cut(s) 70, 139, 788, 972
BtsI GCAGTG 1 cut(s) 1025
BtsIMutI CAGTG 2 cut(s) 1025, 1195
Cac8I GCNNGC 2 cut(s) 291, 1746
CaiI CAGNNNCTG 1 cut(s) 1789
CciI TCATGA 1 cut(s) 367
CfoI GCGC 2 cut(s) 10, 788
Cfr10I RCCGGY 1 cut(s) 289
Cfr13I GGNCC 2 cut(s) 287, 1351
CseI GACGC 2 cut(s) 226, 292
Csp6I GTAC 7 cut(s) 145, 157, 379, 505, 969, 1251, 1723
CviAII CATG 6 cut(s) 368, 604, 1184, 1277, 1684, 1745
CviQI GTAC 7 cut(s) 145, 157, 379, 505, 969, 1251, 1723
DdeI CTNAG 4 cut(s) 360, 1074, 1296, 1397
EaeI YGGCCR 2 cut(s) 3, 1697
Eam1104I CTCTTC 3 cut(s) 245, 855, 1075
EarI CTCTTC 3 cut(s) 245, 855, 1075
Eco24I GRGCYC 1 cut(s) 129
Eco57I CTGAAG 1 cut(s) 409
EcoRII CCWGG 1 cut(s) 1147
EcoT22I ATGCAT 1 cut(s) 1746
EcoT38I GRGCYC 1 cut(s) 129
Esp3I CGTCTC 1 cut(s) 209
FaeI CATG 6 cut(s) 371, 607, 1187, 1280, 1687, 1748
FaqI GGGAC 1 cut(s) 1344
FatI CATG 6 cut(s) 367, 603, 1183, 1276, 1683, 1744
FbaI TGATCA 1 cut(s) 1509
FblI GTMKAC 1 cut(s) 1012
FokI GGATG 4 cut(s) 57, 146, 775, 959
FriOI GRGCYC 1 cut(s) 129
FspBI CTAG 4 cut(s) 18, 338, 1827, 1846
FspI TGCGCA 1 cut(s) 787
GlaI GCGC 2 cut(s) 9, 787
GsuI CTGGAG 2 cut(s) 315, 840
HaeIII GGCC 4 cut(s) 5, 289, 1353, 1699
HapII CCGG 6 cut(s) 131, 160, 172, 212, 290, 485
HgaI GACGC 2 cut(s) 226, 292
HhaI GCGC 2 cut(s) 10, 788
Hin1I GRCGYC 1 cut(s) 1333
Hin1II CATG 6 cut(s) 371, 607, 1187, 1280, 1687, 1748
Hin6I GCGC 2 cut(s) 8, 786
HinP1I GCGC 2 cut(s) 8, 786
HincII GTYRAC 3 cut(s) 931, 1438, 1665
HindII GTYRAC 3 cut(s) 931, 1438, 1665
HinfI GANTC 8 cut(s) 88, 149, 332, 362, 658, 1094, 1187, 1680
HpaI GTTAAC 1 cut(s) 1665
HpaII CCGG 6 cut(s) 131, 160, 172, 212, 290, 485
HphI GGTGA 5 cut(s) 29, 271, 396, 1184, 1504
Hpy166II GTNNAC 6 cut(s) 894, 931, 1013, 1438, 1665, 1832
Hpy188III TCNNGA 7 cut(s) 92, 368, 427, 485, 689, 1481, 1790
Hpy8I GTNNAC 6 cut(s) 894, 931, 1013, 1438, 1665, 1832
Hpy99I CGWCG 1 cut(s) 123
HpyAV CCTTC 5 cut(s) 256, 307, 1231, 1302, 1630
HpyCH4III ACNGT 4 cut(s) 1199, 1442, 1658, 1763
HpyCH4IV ACGT 6 cut(s) 121, 580, 805, 1056, 1123, 1333
HpyCH4V TGCA 9 cut(s) 822, 1001, 1030, 1183, 1614, 1625, 1744, 1748, 1811
HpyF10VI GCNNNNNNNGC 3 cut(s) 124, 1696, 1817
HpyF3I CTNAG 4 cut(s) 360, 1074, 1296, 1397
HpySE526I ACGT 6 cut(s) 121, 580, 805, 1056, 1123, 1333
Hsp92I GRCGYC 1 cut(s) 1333
Hsp92II CATG 6 cut(s) 371, 607, 1187, 1280, 1687, 1748
HspAI GCGC 2 cut(s) 8, 786
Kpn2I TCCGGA 1 cut(s) 484
KpnI GGTACC 1 cut(s) 160
KroI GCCGGC 1 cut(s) 289
KroNI GCCGGC 1 cut(s) 291
Ksp22I TGATCA 1 cut(s) 1509
KspAI GTTAAC 1 cut(s) 1665
LguI GCTCTTC 1 cut(s) 855
LmnI GCTCC 2 cut(s) 174, 1521
Lsp1109I GCAGC 5 cut(s) 217, 509, 690, 1760, 1795
LweI GCATC 2 cut(s) 767, 797
MaeI CTAG 4 cut(s) 18, 338, 1827, 1846
MaeII ACGT 6 cut(s) 121, 580, 805, 1056, 1123, 1333
MaeIII GTNAC 4 cut(s) 1139, 1232, 1585, 1642
MbiI CCGCTC 1 cut(s) 1527
MboII GAAGA 9 cut(s) 262, 464, 467, 842, 935, 1057, 1062, 1280, 1328
MfeI CAATTG 1 cut(s) 1002
MflI RGATCY 3 cut(s) 1062, 1216, 1792
MhlI GDGCHC 5 cut(s) 52, 129, 171, 351, 1112
MluCI AATT 8 cut(s) 238, 468, 638, 1002, 1039, 1602, 1716, 1798
MlyI GAGTC 4 cut(s) 97, 158, 371, 1103
MmeI TCCRAC 3 cut(s) 331, 601, 1194
Mph1103I ATGCAT 1 cut(s) 1746
MroI TCCGGA 1 cut(s) 484
MroNI GCCGGC 1 cut(s) 289
MroXI GAANNNNTTC 1 cut(s) 471
MseI TTAA 7 cut(s) 383, 432, 765, 981, 1038, 1664, 1758
MspA1I CMGCKG 2 cut(s) 32, 230
MspI CCGG 6 cut(s) 131, 160, 172, 212, 290, 485
MspR9I CCNGG 3 cut(s) 131, 173, 1149
MunI CAATTG 1 cut(s) 1002
MvaI CCWGG 1 cut(s) 1149
MvnI CGCG 2 cut(s) 8, 1211
MwoI GCNNNNNNNGC 3 cut(s) 124, 1696, 1817
NaeI GCCGGC 1 cut(s) 291
NciI CCSGG 2 cut(s) 131, 173
NgoMIV GCCGGC 1 cut(s) 289
NlaIII CATG 6 cut(s) 371, 607, 1187, 1280, 1687, 1748
NlaIV GGNNCC 6 cut(s) 158, 1218, 1352, 1523, 1689, 1794
NsbI TGCGCA 1 cut(s) 787
NsiI ATGCAT 1 cut(s) 1746
NspI RCATGY 1 cut(s) 1748
PaeI GCATGC 1 cut(s) 1748
PagI TCATGA 1 cut(s) 367
PciSI GCTCTTC 1 cut(s) 855
PcsI WCGNNNNNNNCGW 2 cut(s) 64, 586
PdiI GCCGGC 1 cut(s) 291
PdmI GAANNNNTTC 1 cut(s) 471
PfeI GAWTC 4 cut(s) 332, 658, 1187, 1680
PflFI GACNNNGTC 2 cut(s) 87, 1093
PflMI CCANNNNNTGG 1 cut(s) 840
PleI GAGTC 4 cut(s) 96, 157, 370, 1102
PpsI GAGTC 4 cut(s) 96, 157, 370, 1102
PshBI ATTAAT 1 cut(s) 432
Psp6I CCWGG 1 cut(s) 1147
PspGI CCWGG 1 cut(s) 1147
PspN4I GGNNCC 6 cut(s) 158, 1218, 1352, 1523, 1689, 1794
PspPI GGNCC 2 cut(s) 287, 1351
PstNI CAGNNNCTG 1 cut(s) 1789
PsuI RGATCY 3 cut(s) 1062, 1216, 1792
PsyI GACNNNGTC 2 cut(s) 87, 1093
RsaI GTAC 7 cut(s) 146, 158, 380, 506, 970, 1252, 1724
RsaNI GTAC 7 cut(s) 145, 157, 379, 505, 969, 1251, 1723
SapI GCTCTTC 1 cut(s) 855
SaqAI TTAA 7 cut(s) 383, 432, 765, 981, 1038, 1664, 1758
Sau96I GGNCC 2 cut(s) 287, 1351
ScaI AGTACT 2 cut(s) 380, 1252
SchI GAGTC 4 cut(s) 97, 158, 371, 1103
ScrFI CCNGG 3 cut(s) 131, 173, 1149
SduI GDGCHC 5 cut(s) 52, 129, 171, 351, 1112
SfaNI GCATC 2 cut(s) 767, 797
SmlI CTYRAG 1 cut(s) 1528
SmoI CTYRAG 1 cut(s) 1528
SphI GCATGC 1 cut(s) 1748
Sse9I AATT 8 cut(s) 238, 468, 638, 1002, 1039, 1602, 1716, 1798
SsiI CCGC 9 cut(s) 6, 11, 32, 40, 79, 228, 495, 871, 1525
SspI AATATT 2 cut(s) 436, 985
SspMI CTAG 4 cut(s) 18, 338, 1827, 1846
StyD4I CCNGG 3 cut(s) 129, 171, 1147
TaaI ACNGT 4 cut(s) 1199, 1442, 1658, 1763
TaiI ACGT 6 cut(s) 124, 583, 808, 1059, 1126, 1336
TaqI TCGA 7 cut(s) 67, 198, 208, 283, 478, 626, 1557
TaqII GACCGA 1 cut(s) 100
TasI AATT 8 cut(s) 238, 468, 638, 1002, 1039, 1602, 1716, 1798
TatI WGTACW 3 cut(s) 378, 1250, 1722
TauI GCSGC 7 cut(s) 8, 13, 35, 81, 230, 873, 1527
TfiI GAWTC 4 cut(s) 332, 658, 1187, 1680
Tru1I TTAA 7 cut(s) 383, 432, 765, 981, 1038, 1664, 1758
Tru9I TTAA 7 cut(s) 383, 432, 765, 981, 1038, 1664, 1758
TscAI CASTG 2 cut(s) 1032, 1202
TseI GCWGC 5 cut(s) 230, 497, 678, 1748, 1783
TspDTI ATGAA 6 cut(s) 620, 645, 891, 1200, 1265, 1672
TspRI CASTG 2 cut(s) 1032, 1202
Tth111I GACNNNGTC 2 cut(s) 87, 1093
Van91I CCANNNNNTGG 1 cut(s) 840
VspI ATTAAT 1 cut(s) 432
XapI RAATTY 2 cut(s) 468, 638
XceI RCATGY 1 cut(s) 1748
XcmI CCANNNNNNNNNTGG 1 cut(s) 1029
XmiI GTMKAC 1 cut(s) 1012
XmnI GAANNNNTTC 1 cut(s) 471
XspI CTAG 4 cut(s) 18, 338, 1827, 1846
ZraI GACGTC 1 cut(s) 1334
ZrmI AGTACT 2 cut(s) 380, 1252
Zsp2I ATGCAT 1 cut(s) 1746
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.